
                  PPPPP                FFFFFF ii   tt
                  PP  PP               FF          tt
                  PP  PP rrrrr   oooo  FF     ii  ttttt
                  PPPPP  rr  rr oo  oo FFFF   ii   tt
                  PP     rr     oo  oo FF     ii   tt
                  PP     rr     oo  oo FF     ii   tt
                  PP     rr      oooo  FF      ii   ttt

                      Protein Least Squares Fitting

                               Version 2.5.1

      Copyright (c) Dr. Andrew C.R. Martin, SciTech Software 1992-2005

   Unrecognised keyword: pdb12e8_chothia.pdb pdb25c8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 2.968
   RMS: 0.419
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a14_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.819
   RMS: 0.642
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a2y_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.855
   RMS: 0.920
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rur_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.788
   RMS: 0.559
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a3r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 3.314
   RMS: 0.560
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.971
   RMS: 0.600
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.751
   RMS: 0.524
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.817
   RMS: 0.505
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 1.297
   RMS: 1.017
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.125
   RMS: 1.125
   RMS: 1.757
   RMS: 1.125
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.696
   RMS: 0.528
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.591
   RMS: 0.825
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.650
   RMS: 0.656
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.454
   RMS: 0.506
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 2.922
   RMS: 0.860
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.003
   RMS: 0.498
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.035
   RMS: 0.722
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.308
   RMS: 0.842
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 2.488
   RMS: 0.513
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.153
   RMS: 0.919
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.041
   RMS: 0.483
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.770
   RMS: 0.926
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.768
   RMS: 0.756
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 1.155
   RMS: 0.623
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.612
   RMS: 0.799
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.506
   RMS: 0.769
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 3.153
   RMS: 0.931
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.050
   RMS: 0.737
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.490
   RMS: 0.893
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.763
   RMS: 0.864
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.643
   RMS: 0.819
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 1.284
   RMS: 0.651
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.797
   RMS: 0.759
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.489
   RMS: 0.538
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 1.297
   RMS: 0.577
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.834
   RMS: 0.668
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.882
   RMS: 0.693
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 1.828
   RMS: 0.909
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.529
   RMS: 0.795
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.043
   RMS: 0.899
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.159
   RMS: 0.727
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.178
   RMS: 1.178
   RMS: 2.797
   RMS: 1.178
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.803
   RMS: 0.525
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 4.078
   RMS: 0.607
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 1.514
   RMS: 0.513
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.777
   RMS: 0.580
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 2.169
   RMS: 0.826
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.089
   RMS: 0.736
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.056
   RMS: 0.878
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.160
   RMS: 0.866
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 1.555
   RMS: 0.537
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.175
   RMS: 0.806
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.358
   RMS: 0.857
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 3.237
   RMS: 0.904
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.082
   RMS: 0.601
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.444
   RMS: 0.810
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.897
   RMS: 0.815
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.053
   RMS: 1.053
   RMS: 2.219
   RMS: 1.053
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.943
   RMS: 0.614
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.895
   RMS: 5.895
   RMS: 16.896
   RMS: 5.895
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.647
   RMS: 0.783
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.774
   RMS: 0.556
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.650
   RMS: 0.822
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.358
   RMS: 0.784
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.920
   RMS: 0.720
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.092
   RMS: 0.775
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.216
   RMS: 0.641
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.231
   RMS: 0.650
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.515
   RMS: 0.800
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.782
   RMS: 0.884
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 2.287
   RMS: 0.839
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.276
   RMS: 0.773
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.717
   RMS: 0.689
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 3.589
   RMS: 0.709
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.401
   RMS: 0.802
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 1.576
   RMS: 0.533
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.487
   RMS: 0.794
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.108
   RMS: 0.538
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.643
   RMS: 0.698
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.215
   RMS: 0.760
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.452
   RMS: 0.781
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 2.086
   RMS: 0.942
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.202
   RMS: 0.636
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.278
   RMS: 0.787
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.707
   RMS: 0.765
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 2.123
   RMS: 0.804
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.064
   RMS: 0.662
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.640
   RMS: 0.654
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.181
   RMS: 0.549
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.727
   RMS: 0.578
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.842
   RMS: 0.909
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.765
   RMS: 0.630
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 1.166
   RMS: 0.637
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.586
   RMS: 0.708
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.128
   RMS: 0.865
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.696
   RMS: 0.548
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.329
   RMS: 0.596
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.689
   RMS: 0.671
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 2.701
   RMS: 0.988
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.954
   RMS: 0.843
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.965
   RMS: 0.872
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 3.110
   RMS: 0.505
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.093
   RMS: 2.093
   RMS: 13.421
   RMS: 2.093
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.576
   RMS: 0.744
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.675
   RMS: 0.764
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 1.547
   RMS: 0.464
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 2.435
   RMS: 0.835
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.885
   RMS: 0.885
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.327
   RMS: 0.810
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.039
   RMS: 0.847
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.406
   RMS: 0.748
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.700
   RMS: 1.700
   RMS: 2.007
   RMS: 1.700
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.115
   RMS: 0.601
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.663
   RMS: 0.626
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.723
   RMS: 0.801
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 3.124
   RMS: 0.633
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 2.836
   RMS: 0.568
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.632
   RMS: 0.484
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.986
   RMS: 0.798
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.137
   RMS: 0.728
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 2.769
   RMS: 0.869
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.000
   RMS: 0.799
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.416
   RMS: 0.734
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.956
   RMS: 0.458
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 1.135
   RMS: 0.632
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.219
   RMS: 0.921
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.535
   RMS: 0.743
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 1.265
   RMS: 0.920
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.447
   RMS: 0.922
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.866
   RMS: 0.886
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.943
   RMS: 0.614
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.579
   RMS: 0.504
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.750
   RMS: 0.449
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.164
   RMS: 0.756
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.760
   RMS: 0.753
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.822
   RMS: 0.645
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.312
   RMS: 0.704
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 3.296
   RMS: 0.456
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 1.013
   RMS: 0.649
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.585
   RMS: 0.822
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 1.805
   RMS: 1.062
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.318
   RMS: 0.827
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.061
   RMS: 0.538
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 1.140
   RMS: 0.590
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 1.263
   RMS: 0.622
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 1.313
   RMS: 0.694
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.862
   RMS: 0.756
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.644
   RMS: 0.728
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.588
   RMS: 0.737
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 2.573
   RMS: 0.850
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.897
   RMS: 0.511
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.426
   RMS: 0.780
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 3.102
   RMS: 0.786
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.189
   RMS: 0.808
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.706
   RMS: 0.536
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 1.177
   RMS: 0.626
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.580
   RMS: 0.807
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.858
   RMS: 0.811
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.097
   RMS: 0.647
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.896
   RMS: 0.676
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.068
   RMS: 0.622
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.654
   RMS: 0.688
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.905
   RMS: 0.542
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 3.285
   RMS: 0.683
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.148
   RMS: 0.691
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.758
   RMS: 0.757
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.141
   RMS: 0.641
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.501
   RMS: 0.633
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 3.212
   RMS: 0.555
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.081
   RMS: 0.583
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.924
   RMS: 0.630
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.452
   RMS: 0.766
   Unrecognised keyword: pdb12e8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.427
   RMS: 0.705
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.449
   RMS: 0.788
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.968
   RMS: 0.786
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.228
   RMS: 0.880
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.596
   RMS: 0.792
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.766
   RMS: 0.922
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.105
   RMS: 0.797
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 1.058
   RMS: 0.403
   Unrecognised keyword: pdb12e8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.458
   RMS: 0.619
   Unrecognised keyword: pdb12e8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 2.799
   RMS: 0.936
   Unrecognised keyword: pdb12e8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.140
   RMS: 0.815
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a14_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.318
   RMS: 0.556
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a2y_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 3.246
   RMS: 0.853
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rur_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 3.351
   RMS: 0.451
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a3r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.082
   RMS: 0.471
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.340
   RMS: 0.556
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 3.235
   RMS: 0.474
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 2.983
   RMS: 0.432
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 3.436
   RMS: 0.892
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 3.895
   RMS: 0.959
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 2.990
   RMS: 0.441
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 3.927
   RMS: 0.729
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.022
   RMS: 0.563
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 2.991
   RMS: 0.431
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.655
   RMS: 0.806
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 3.178
   RMS: 0.418
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 3.415
   RMS: 0.646
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.574
   RMS: 0.728
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.430
   RMS: 0.474
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 3.374
   RMS: 0.770
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 3.273
   RMS: 0.411
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 4.073
   RMS: 0.819
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 4.042
   RMS: 0.618
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.538
   RMS: 0.552
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 3.919
   RMS: 0.715
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.860
   RMS: 0.682
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.771
   RMS: 0.797
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.583
   RMS: 0.661
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.853
   RMS: 0.734
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 3.997
   RMS: 0.797
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.839
   RMS: 0.718
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.392
   RMS: 0.614
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 4.085
   RMS: 0.649
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 3.114
   RMS: 0.504
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 3.649
   RMS: 0.536
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 3.045
   RMS: 0.631
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 3.435
   RMS: 0.600
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.949
   RMS: 0.809
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.759
   RMS: 0.615
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.850
   RMS: 0.780
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.552
   RMS: 0.647
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 4.863
   RMS: 1.002
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 3.204
   RMS: 0.442
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 2.172
   RMS: 0.556
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 3.891
   RMS: 0.478
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 3.167
   RMS: 0.504
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 4.220
   RMS: 0.711
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.161
   RMS: 0.597
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.429
   RMS: 0.720
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.568
   RMS: 0.724
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.825
   RMS: 0.457
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.399
   RMS: 0.685
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.624
   RMS: 0.721
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.836
   RMS: 0.768
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 3.492
   RMS: 0.498
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 3.606
   RMS: 0.732
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.121
   RMS: 0.694
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.775
   RMS: 0.933
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 3.491
   RMS: 0.548
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.856
   RMS: 5.856
   RMS: 17.336
   RMS: 5.856
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.965
   RMS: 0.738
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 3.153
   RMS: 0.496
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.871
   RMS: 0.724
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.586
   RMS: 0.692
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 3.296
   RMS: 0.616
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.502
   RMS: 0.671
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 3.707
   RMS: 0.491
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 3.722
   RMS: 0.508
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.691
   RMS: 0.710
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 3.872
   RMS: 0.719
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 4.525
   RMS: 0.719
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 3.609
   RMS: 0.654
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 3.994
   RMS: 0.591
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.552
   RMS: 0.620
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 3.830
   RMS: 0.699
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 3.726
   RMS: 0.479
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 3.778
   RMS: 0.657
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 3.530
   RMS: 0.502
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.166
   RMS: 0.628
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.432
   RMS: 0.674
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 3.747
   RMS: 0.664
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 4.176
   RMS: 0.807
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 3.489
   RMS: 0.550
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.550
   RMS: 0.647
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.967
   RMS: 0.682
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 4.372
   RMS: 0.727
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 2.034
   RMS: 0.650
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 3.943
   RMS: 0.575
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 3.482
   RMS: 0.488
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 3.215
   RMS: 0.450
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 3.414
   RMS: 0.836
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 3.263
   RMS: 0.550
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.595
   RMS: 0.553
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 3.141
   RMS: 0.610
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 3.560
   RMS: 0.731
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 3.082
   RMS: 0.507
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 3.679
   RMS: 0.467
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.209
   RMS: 0.617
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.559
   RMS: 0.862
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 4.116
   RMS: 0.715
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.359
   RMS: 0.783
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.768
   RMS: 0.468
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.010
   RMS: 2.010
   RMS: 13.560
   RMS: 2.010
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.822
   RMS: 0.660
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.910
   RMS: 0.680
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 3.638
   RMS: 0.429
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 4.558
   RMS: 0.742
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 4.231
   RMS: 0.791
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.795
   RMS: 0.703
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.225
   RMS: 0.705
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 3.753
   RMS: 0.675
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.575
   RMS: 1.575
   RMS: 4.081
   RMS: 1.575
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 1.704
   RMS: 0.539
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 2.984
   RMS: 0.579
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.974
   RMS: 0.671
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.740
   RMS: 0.582
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.908
   RMS: 0.506
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 3.221
   RMS: 0.402
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 3.274
   RMS: 0.759
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 3.567
   RMS: 0.697
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.641
   RMS: 0.713
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.195
   RMS: 0.681
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.719
   RMS: 0.660
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 2.802
   RMS: 0.417
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.538
   RMS: 0.601
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 3.670
   RMS: 0.855
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.776
   RMS: 0.647
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 3.561
   RMS: 0.763
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 3.690
   RMS: 0.751
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 4.089
   RMS: 0.755
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 4.159
   RMS: 0.505
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 3.888
   RMS: 0.480
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 3.179
   RMS: 0.450
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.570
   RMS: 0.688
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 3.387
   RMS: 0.631
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.261
   RMS: 0.556
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.545
   RMS: 0.578
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 2.057
   RMS: 0.368
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 3.291
   RMS: 0.577
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 3.891
   RMS: 0.702
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 3.596
   RMS: 1.037
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 3.665
   RMS: 0.689
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.508
   RMS: 0.458
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 3.337
   RMS: 0.521
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 3.652
   RMS: 0.502
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 3.785
   RMS: 0.505
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.225
   RMS: 0.620
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 4.016
   RMS: 0.618
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.900
   RMS: 0.617
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 4.731
   RMS: 0.713
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.412
   RMS: 0.464
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.866
   RMS: 0.711
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 2.060
   RMS: 0.671
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.553
   RMS: 0.696
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 3.819
   RMS: 0.434
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 3.669
   RMS: 0.519
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 3.888
   RMS: 0.654
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 3.309
   RMS: 0.691
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.494
   RMS: 0.510
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 2.968
   RMS: 0.645
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.544
   RMS: 0.579
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 2.970
   RMS: 0.637
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 3.368
   RMS: 0.468
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 2.453
   RMS: 0.591
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 3.522
   RMS: 0.594
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 4.049
   RMS: 0.643
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 3.572
   RMS: 0.522
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 3.777
   RMS: 0.561
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.912
   RMS: 0.490
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.750
   RMS: 0.530
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 3.300
   RMS: 0.529
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 3.672
   RMS: 0.722
   Unrecognised keyword: pdb25c8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 3.790
   RMS: 0.602
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.823
   RMS: 0.687
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.395
   RMS: 0.680
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 3.586
   RMS: 0.751
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.967
   RMS: 0.717
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.911
   RMS: 0.798
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.513
   RMS: 0.716
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 3.433
   RMS: 0.411
   Unrecognised keyword: pdb25c8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.286
   RMS: 0.563
   Unrecognised keyword: pdb25c8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 2.091
   RMS: 0.817
   Unrecognised keyword: pdb25c8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.243
   RMS: 0.737
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1a2y_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 0.636
   RMS: 0.988
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rur_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.391
   RMS: 0.436
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1a3r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.699
   RMS: 0.556
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.337
   RMS: 0.530
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.278
   RMS: 0.436
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.788
   RMS: 0.466
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.740
   RMS: 0.999
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.066
   RMS: 0.905
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.773
   RMS: 0.433
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.029
   RMS: 0.931
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.586
   RMS: 0.545
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.660
   RMS: 0.631
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 3.136
   RMS: 1.021
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.750
   RMS: 0.513
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.539
   RMS: 0.828
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.599
   RMS: 0.955
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 2.629
   RMS: 0.414
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.641
   RMS: 0.840
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.631
   RMS: 0.371
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.075
   RMS: 0.853
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.190
   RMS: 0.848
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.459
   RMS: 0.632
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.052
   RMS: 0.907
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.926
   RMS: 0.877
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.512
   RMS: 0.834
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.859
   RMS: 0.695
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.823
   RMS: 0.912
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 1.037
   RMS: 0.975
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 1.218
   RMS: 0.950
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.756
   RMS: 0.586
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.112
   RMS: 0.839
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.670
   RMS: 0.520
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.557
   RMS: 0.636
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.735
   RMS: 0.663
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.504
   RMS: 0.781
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.073
   RMS: 1.073
   RMS: 1.124
   RMS: 1.073
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.850
   RMS: 0.781
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 3.301
   RMS: 0.867
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.578
   RMS: 0.875
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.085
   RMS: 1.085
   RMS: 2.136
   RMS: 1.085
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.498
   RMS: 0.444
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 4.280
   RMS: 0.501
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.908
   RMS: 0.417
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.493
   RMS: 0.477
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.449
   RMS: 0.927
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 3.330
   RMS: 0.584
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.577
   RMS: 0.906
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.550
   RMS: 0.822
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.798
   RMS: 0.425
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.689
   RMS: 0.910
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.894
   RMS: 0.844
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 3.615
   RMS: 0.848
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.377
   RMS: 0.509
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.963
   RMS: 0.673
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.564
   RMS: 0.796
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.714
   RMS: 0.798
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.533
   RMS: 0.706
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.824
   RMS: 5.824
   RMS: 16.570
   RMS: 5.824
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.068
   RMS: 0.879
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.567
   RMS: 0.488
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 0.997
   RMS: 0.934
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.623
   RMS: 0.607
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.446
   RMS: 0.833
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.455
   RMS: 0.890
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.811
   RMS: 0.636
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.800
   RMS: 0.631
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.099
   RMS: 0.837
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.167
   RMS: 0.872
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.746
   RMS: 0.927
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.985
   RMS: 0.830
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.023
   RMS: 0.587
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 4.009
   RMS: 0.608
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.766
   RMS: 0.903
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 1.025
   RMS: 0.457
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.822
   RMS: 0.826
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.483
   RMS: 0.483
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.557
   RMS: 0.699
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.922
   RMS: 0.835
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.989
   RMS: 0.869
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 1.472
   RMS: 1.054
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.599
   RMS: 0.586
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.578
   RMS: 0.864
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.036
   RMS: 0.877
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.461
   RMS: 0.911
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 3.466
   RMS: 0.744
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.910
   RMS: 0.521
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 0.499
   RMS: 0.499
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.354
   RMS: 0.443
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.067
   RMS: 1.067
   RMS: 0.557
   RMS: 1.067
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.361
   RMS: 0.524
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.501
   RMS: 0.567
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.379
   RMS: 0.813
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.489
   RMS: 0.881
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.558
   RMS: 0.512
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.854
   RMS: 0.463
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.724
   RMS: 0.797
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 2.885
   RMS: 0.955
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.483
   RMS: 0.881
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 0.713
   RMS: 0.914
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 3.483
   RMS: 0.503
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.100
   RMS: 2.100
   RMS: 13.473
   RMS: 2.100
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.871
   RMS: 0.783
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.218
   RMS: 0.858
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.865
   RMS: 0.426
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.793
   RMS: 0.910
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 1.346
   RMS: 1.054
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 0.916
   RMS: 0.959
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.554
   RMS: 0.781
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.869
   RMS: 0.890
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.647
   RMS: 1.647
   RMS: 1.276
   RMS: 1.647
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 3.352
   RMS: 0.587
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.664
   RMS: 0.557
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.294
   RMS: 0.910
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 3.402
   RMS: 0.529
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 3.127
   RMS: 0.493
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.606
   RMS: 0.458
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.517
   RMS: 0.903
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.626
   RMS: 0.630
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 2.941
   RMS: 0.796
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.800
   RMS: 0.851
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.104
   RMS: 0.855
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 1.063
   RMS: 0.371
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.740
   RMS: 0.633
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.151
   RMS: 1.151
   RMS: 0.733
   RMS: 1.151
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.927
   RMS: 0.846
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.601
   RMS: 0.854
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.709
   RMS: 0.868
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.158
   RMS: 0.871
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.379
   RMS: 0.754
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.107
   RMS: 0.472
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.516
   RMS: 0.412
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.755
   RMS: 0.905
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 0.593
   RMS: 0.933
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.603
   RMS: 0.742
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.686
   RMS: 0.726
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 3.733
   RMS: 0.518
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 0.626
   RMS: 0.591
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.032
   RMS: 0.894
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 1.347
   RMS: 1.016
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.668
   RMS: 0.675
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.464
   RMS: 0.426
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.584
   RMS: 0.509
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.521
   RMS: 0.554
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.983
   RMS: 0.637
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.851
   RMS: 0.681
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.979
   RMS: 0.811
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.055
   RMS: 0.845
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 2.018
   RMS: 0.905
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.397
   RMS: 0.406
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.794
   RMS: 0.885
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 3.258
   RMS: 0.805
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.706
   RMS: 0.868
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 1.104
   RMS: 0.565
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.677
   RMS: 0.628
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.046
   RMS: 0.814
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.330
   RMS: 0.871
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.780
   RMS: 0.659
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.278
   RMS: 0.739
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 3.294
   RMS: 0.634
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.808
   RMS: 0.610
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.272
   RMS: 0.382
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 3.538
   RMS: 0.804
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.399
   RMS: 0.620
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.248
   RMS: 0.901
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.430
   RMS: 0.563
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.965
   RMS: 0.772
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 3.609
   RMS: 0.454
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 3.407
   RMS: 0.409
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.490
   RMS: 0.547
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.734
   RMS: 0.782
   Unrecognised keyword: pdb1a14_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.835
   RMS: 0.804
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.822
   RMS: 0.883
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.380
   RMS: 0.870
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.594
   RMS: 0.903
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.083
   RMS: 0.926
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.104
   RMS: 0.952
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.641
   RMS: 0.891
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.423
   RMS: 0.411
   Unrecognised keyword: pdb1a14_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.423
   RMS: 0.546
   Unrecognised keyword: pdb1a14_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 2.870
   RMS: 0.964
   Unrecognised keyword: pdb1a14_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 3.524
   RMS: 0.949
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rur_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.452
   RMS: 0.866
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1a3r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.490
   RMS: 0.896
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.643
   RMS: 0.911
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.541
   RMS: 0.896
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.818
   RMS: 0.878
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.728
   RMS: 0.794
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.132
   RMS: 1.132
   RMS: 1.249
   RMS: 1.132
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.768
   RMS: 0.835
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.152
   RMS: 0.998
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 0.386
   RMS: 0.957
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.617
   RMS: 0.779
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 2.902
   RMS: 1.009
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.922
   RMS: 0.883
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.548
   RMS: 0.830
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 0.792
   RMS: 0.976
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 2.519
   RMS: 0.859
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.729
   RMS: 0.746
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 0.962
   RMS: 0.923
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.269
   RMS: 0.777
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.220
   RMS: 0.907
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.859
   RMS: 0.800
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 1.100
   RMS: 0.979
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 1.045
   RMS: 0.969
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 3.325
   RMS: 0.740
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 0.715
   RMS: 0.939
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.974
   RMS: 0.814
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 1.171
   RMS: 0.988
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 1.153
   RMS: 0.989
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 1.125
   RMS: 0.937
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 1.327
   RMS: 0.962
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.611
   RMS: 0.892
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.978
   RMS: 0.844
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 0.909
   RMS: 0.925
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.508
   RMS: 0.898
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.097
   RMS: 1.097
   RMS: 1.477
   RMS: 1.097
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.186
   RMS: 0.760
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.208
   RMS: 0.687
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.711
   RMS: 0.830
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.271
   RMS: 1.271
   RMS: 2.270
   RMS: 1.271
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.482
   RMS: 0.920
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 4.347
   RMS: 0.911
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.068
   RMS: 0.917
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.622
   RMS: 0.974
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.699
   RMS: 0.984
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 3.166
   RMS: 0.876
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.523
   RMS: 0.667
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.828
   RMS: 0.739
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.185
   RMS: 0.923
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.698
   RMS: 0.972
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.881
   RMS: 0.694
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.285
   RMS: 0.666
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.700
   RMS: 0.847
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 1.056
   RMS: 1.016
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 0.654
   RMS: 0.959
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.106
   RMS: 1.106
   RMS: 1.951
   RMS: 1.106
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.588
   RMS: 0.842
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.933
   RMS: 5.933
   RMS: 16.889
   RMS: 5.933
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.190
   RMS: 0.708
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.463
   RMS: 0.880
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.248
   RMS: 1.005
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.972
   RMS: 0.950
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.751
   RMS: 0.948
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.826
   RMS: 0.900
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.919
   RMS: 0.815
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.944
   RMS: 0.837
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.863
   RMS: 0.732
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.188
   RMS: 0.961
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 1.976
   RMS: 0.981
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.733
   RMS: 0.701
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.294
   RMS: 0.863
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 3.814
   RMS: 0.924
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.029
   RMS: 1.029
   RMS: 1.032
   RMS: 1.029
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.044
   RMS: 0.898
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.036
   RMS: 0.880
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 0.908
   RMS: 1.013
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 0.528
   RMS: 0.952
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.606
   RMS: 0.659
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 1.032
   RMS: 0.949
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.043
   RMS: 1.043
   RMS: 1.515
   RMS: 1.043
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.693
   RMS: 0.896
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 0.751
   RMS: 0.969
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.185
   RMS: 0.924
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 1.658
   RMS: 0.946
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.145
   RMS: 0.886
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.290
   RMS: 0.891
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.692
   RMS: 0.873
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.387
   RMS: 0.828
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.176
   RMS: 1.176
   RMS: 0.755
   RMS: 1.176
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.404
   RMS: 0.903
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.751
   RMS: 0.820
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.455
   RMS: 0.765
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.633
   RMS: 0.659
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.425
   RMS: 0.950
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.013
   RMS: 0.905
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.353
   RMS: 0.769
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 2.713
   RMS: 0.842
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.419
   RMS: 0.991
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.283
   RMS: 0.283
   RMS: 0.294
   RMS: 0.283
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 3.330
   RMS: 0.883
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.128
   RMS: 2.128
   RMS: 13.652
   RMS: 2.128
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.994
   RMS: 0.948
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.361
   RMS: 0.915
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.187
   RMS: 0.898
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 1.922
   RMS: 0.969
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.489
   RMS: 1.057
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 0.938
   RMS: 1.022
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.587
   RMS: 0.873
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 0.845
   RMS: 0.970
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.871
   RMS: 1.871
   RMS: 1.599
   RMS: 1.871
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.068
   RMS: 0.886
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.749
   RMS: 0.924
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.399
   RMS: 1.023
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 3.323
   RMS: 0.900
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 2.848
   RMS: 0.942
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.521
   RMS: 0.929
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.677
   RMS: 0.787
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 0.727
   RMS: 1.021
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 2.766
   RMS: 0.715
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.565
   RMS: 0.999
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.876
   RMS: 0.863
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.021
   RMS: 0.886
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.940
   RMS: 0.916
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 0.831
   RMS: 1.082
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 0.989
   RMS: 0.931
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.853
   RMS: 0.805
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.043
   RMS: 0.696
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 1.450
   RMS: 0.672
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.501
   RMS: 0.881
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.059
   RMS: 0.880
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.628
   RMS: 0.890
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 0.735
   RMS: 0.956
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.578
   RMS: 0.881
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.374
   RMS: 0.785
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.739
   RMS: 0.769
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.411
   RMS: 0.908
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.607
   RMS: 0.891
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.982
   RMS: 0.982
   RMS: 1.084
   RMS: 0.982
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.159
   RMS: 1.159
   RMS: 1.701
   RMS: 1.159
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.799
   RMS: 0.873
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.546
   RMS: 0.885
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.796
   RMS: 0.892
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.892
   RMS: 0.835
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.027
   RMS: 0.844
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 0.914
   RMS: 0.928
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.221
   RMS: 0.882
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 1.097
   RMS: 0.975
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 2.161
   RMS: 0.995
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.506
   RMS: 0.924
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.043
   RMS: 0.660
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 2.989
   RMS: 0.603
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.622
   RMS: 0.616
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.317
   RMS: 0.910
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.921
   RMS: 0.806
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.020
   RMS: 0.872
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 0.719
   RMS: 0.954
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.678
   RMS: 0.820
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 0.890
   RMS: 1.025
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 3.107
   RMS: 1.008
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 0.802
   RMS: 0.925
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.574
   RMS: 0.895
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 3.212
   RMS: 0.807
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.746
   RMS: 0.789
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.274
   RMS: 0.902
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.778
   RMS: 0.850
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.929
   RMS: 0.832
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 3.418
   RMS: 0.880
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 3.261
   RMS: 0.878
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 0.625
   RMS: 0.925
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.161
   RMS: 0.751
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.894
   RMS: 0.896
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 0.927
   RMS: 0.971
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 0.720
   RMS: 1.005
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.667
   RMS: 0.613
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.027
   RMS: 0.972
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 1.128
   RMS: 1.038
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 0.580
   RMS: 0.996
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.787
   RMS: 0.896
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.107
   RMS: 0.933
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 2.672
   RMS: 0.746
   Unrecognised keyword: pdb1a2y_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 3.257
   RMS: 0.725
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1a3r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 3.656
   RMS: 0.405
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.489
   RMS: 0.448
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.394
   RMS: 0.391
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.715
   RMS: 0.344
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.742
   RMS: 0.846
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.223
   RMS: 0.824
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 0.711
   RMS: 0.352
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.084
   RMS: 0.889
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.562
   RMS: 0.414
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.564
   RMS: 0.425
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 3.157
   RMS: 0.963
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.758
   RMS: 0.469
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.495
   RMS: 0.729
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.632
   RMS: 0.883
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.299
   RMS: 0.299
   RMS: 2.667
   RMS: 0.299
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.737
   RMS: 0.682
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.313
   RMS: 0.313
   RMS: 0.728
   RMS: 0.313
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.147
   RMS: 0.671
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.231
   RMS: 0.759
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.569
   RMS: 0.510
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.072
   RMS: 0.831
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.996
   RMS: 0.832
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 3.497
   RMS: 0.725
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.737
   RMS: 0.594
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.821
   RMS: 0.807
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.089
   RMS: 0.911
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.277
   RMS: 0.883
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.879
   RMS: 0.514
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.200
   RMS: 0.769
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.627
   RMS: 0.470
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.707
   RMS: 0.513
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.705
   RMS: 0.639
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.493
   RMS: 0.729
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 1.202
   RMS: 1.014
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.967
   RMS: 0.699
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.344
   RMS: 0.771
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.521
   RMS: 0.767
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.001
   RMS: 1.001
   RMS: 2.215
   RMS: 1.001
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.277
   RMS: 0.277
   RMS: 0.520
   RMS: 0.277
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 4.327
   RMS: 0.406
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.978
   RMS: 0.369
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 0.475
   RMS: 0.342
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.609
   RMS: 0.839
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 3.343
   RMS: 0.496
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.499
   RMS: 0.776
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.620
   RMS: 0.670
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.358
   RMS: 0.358
   RMS: 0.983
   RMS: 0.358
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.707
   RMS: 0.823
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.955
   RMS: 0.707
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 3.550
   RMS: 0.712
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.505
   RMS: 0.405
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.903
   RMS: 0.560
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.660
   RMS: 0.764
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.775
   RMS: 0.795
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.515
   RMS: 0.600
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.880
   RMS: 5.880
   RMS: 16.684
   RMS: 5.880
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.149
   RMS: 0.786
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.430
   RMS: 0.458
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.116
   RMS: 0.863
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.721
   RMS: 0.495
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.466
   RMS: 0.777
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.525
   RMS: 0.802
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.835
   RMS: 0.500
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.834
   RMS: 0.506
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.077
   RMS: 0.685
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.268
   RMS: 0.779
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.756
   RMS: 0.862
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.912
   RMS: 0.663
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 1.154
   RMS: 0.534
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 3.957
   RMS: 0.475
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.844
   RMS: 0.871
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 1.098
   RMS: 0.365
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.959
   RMS: 0.709
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.710
   RMS: 0.507
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.361
   RMS: 0.618
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.876
   RMS: 0.703
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.047
   RMS: 0.791
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.568
   RMS: 0.955
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.528
   RMS: 0.551
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.677
   RMS: 0.791
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.147
   RMS: 0.804
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.532
   RMS: 0.831
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.398
   RMS: 0.612
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.039
   RMS: 0.518
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.609
   RMS: 0.374
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 0.238
   RMS: 0.319
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 0.548
   RMS: 1.042
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.204
   RMS: 0.448
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.468
   RMS: 0.422
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.367
   RMS: 0.680
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.461
   RMS: 0.717
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.492
   RMS: 0.404
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.966
   RMS: 0.453
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.531
   RMS: 0.627
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.926
   RMS: 0.855
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.514
   RMS: 0.825
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.601
   RMS: 0.806
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.347
   RMS: 0.347
   RMS: 3.463
   RMS: 0.347
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.049
   RMS: 2.049
   RMS: 13.367
   RMS: 2.049
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.961
   RMS: 0.715
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.182
   RMS: 0.779
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.992
   RMS: 0.330
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.893
   RMS: 0.831
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.388
   RMS: 0.977
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.900
   RMS: 0.886
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.586
   RMS: 0.743
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.895
   RMS: 0.800
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.611
   RMS: 1.611
   RMS: 1.309
   RMS: 1.611
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 3.336
   RMS: 0.419
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.634
   RMS: 0.468
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.382
   RMS: 0.812
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 3.418
   RMS: 0.379
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 3.065
   RMS: 0.417
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.528
   RMS: 0.356
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.535
   RMS: 0.810
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.506
   RMS: 0.650
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 2.944
   RMS: 0.672
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.584
   RMS: 0.764
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.068
   RMS: 0.727
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.322
   RMS: 0.322
   RMS: 1.005
   RMS: 0.322
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.621
   RMS: 0.602
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 0.791
   RMS: 1.082
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.021
   RMS: 0.785
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.707
   RMS: 0.747
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.884
   RMS: 0.745
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.284
   RMS: 0.764
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.476
   RMS: 0.621
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 1.080
   RMS: 0.374
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.440
   RMS: 0.353
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.724
   RMS: 0.826
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.506
   RMS: 0.798
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.555
   RMS: 0.635
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 0.781
   RMS: 0.608
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 3.655
   RMS: 0.390
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.537
   RMS: 0.431
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.098
   RMS: 0.838
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 1.423
   RMS: 0.985
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 0.757
   RMS: 0.591
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.470
   RMS: 0.330
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.357
   RMS: 0.357
   RMS: 0.668
   RMS: 0.357
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.682
   RMS: 0.475
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.916
   RMS: 0.547
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.692
   RMS: 0.584
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.049
   RMS: 0.728
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.120
   RMS: 0.780
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 2.043
   RMS: 0.827
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.307
   RMS: 0.307
   RMS: 0.448
   RMS: 0.307
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.851
   RMS: 0.780
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 3.237
   RMS: 0.616
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.726
   RMS: 0.709
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 1.223
   RMS: 0.431
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.757
   RMS: 0.494
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.024
   RMS: 0.708
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.489
   RMS: 0.793
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.818
   RMS: 0.489
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 1.106
   RMS: 0.676
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.281
   RMS: 0.556
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.684
   RMS: 0.504
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.281
   RMS: 0.281
   RMS: 0.390
   RMS: 0.281
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 3.487
   RMS: 0.670
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.550
   RMS: 0.528
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.291
   RMS: 0.800
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.536
   RMS: 0.494
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.009
   RMS: 0.659
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 3.576
   RMS: 0.338
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 3.402
   RMS: 0.337
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.490
   RMS: 0.441
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.908
   RMS: 0.714
   Unrecognised keyword: pdb1rur_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.872
   RMS: 0.704
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.838
   RMS: 0.816
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.468
   RMS: 0.818
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.650
   RMS: 0.726
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.036
   RMS: 0.875
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.150
   RMS: 0.853
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.665
   RMS: 0.831
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.459
   RMS: 0.356
   Unrecognised keyword: pdb1rur_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 1.440
   RMS: 0.434
   Unrecognised keyword: pdb1rur_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 2.901
   RMS: 0.828
   Unrecognised keyword: pdb1rur_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.478
   RMS: 0.844
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1a4j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 3.750
   RMS: 0.574
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 3.601
   RMS: 0.466
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 3.253
   RMS: 0.365
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 3.716
   RMS: 0.888
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 4.289
   RMS: 0.971
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 3.236
   RMS: 0.476
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 4.327
   RMS: 0.980
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 3.347
   RMS: 0.435
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 3.282
   RMS: 0.413
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.957
   RMS: 0.997
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 3.455
   RMS: 0.440
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 3.719
   RMS: 0.807
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 3.920
   RMS: 0.977
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 1.919
   RMS: 0.424
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 3.740
   RMS: 0.786
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 3.628
   RMS: 0.390
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 4.429
   RMS: 0.794
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 4.370
   RMS: 0.858
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.914
   RMS: 0.590
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 4.301
   RMS: 0.942
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 4.243
   RMS: 0.930
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.678
   RMS: 0.807
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.871
   RMS: 0.663
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 4.137
   RMS: 0.875
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 4.338
   RMS: 0.968
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 4.205
   RMS: 0.973
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 3.786
   RMS: 0.571
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 4.464
   RMS: 0.881
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.411
   RMS: 0.583
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 4.027
   RMS: 0.597
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 3.346
   RMS: 0.643
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.767
   RMS: 0.831
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.123
   RMS: 1.123
   RMS: 4.264
   RMS: 1.123
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 4.100
   RMS: 0.777
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.311
   RMS: 0.832
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 3.836
   RMS: 0.836
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 5.224
   RMS: 1.111
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 3.496
   RMS: 0.428
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 2.385
   RMS: 0.418
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 4.266
   RMS: 0.481
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 3.452
   RMS: 0.460
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 4.643
   RMS: 0.926
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.920
   RMS: 0.659
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.725
   RMS: 0.845
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.948
   RMS: 0.754
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 4.232
   RMS: 0.504
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 3.687
   RMS: 0.936
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 3.909
   RMS: 0.785
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.125
   RMS: 0.795
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 3.858
   RMS: 0.441
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 3.924
   RMS: 0.581
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.521
   RMS: 0.896
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 4.034
   RMS: 0.832
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 3.798
   RMS: 0.723
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.887
   RMS: 5.887
   RMS: 17.776
   RMS: 5.887
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 4.344
   RMS: 0.860
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.412
   RMS: 0.422
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 4.242
   RMS: 0.965
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 3.926
   RMS: 0.526
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.631
   RMS: 0.870
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 3.868
   RMS: 0.887
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 4.063
   RMS: 0.594
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 4.081
   RMS: 0.593
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.950
   RMS: 0.791
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 4.211
   RMS: 0.909
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 4.910
   RMS: 0.974
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.886
   RMS: 0.756
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 4.421
   RMS: 0.650
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.642
   RMS: 0.546
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 4.216
   RMS: 0.966
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 4.040
   RMS: 0.475
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 4.182
   RMS: 0.859
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 3.927
   RMS: 0.584
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.444
   RMS: 0.622
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 3.672
   RMS: 0.773
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 4.163
   RMS: 0.890
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 4.521
   RMS: 1.046
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 3.765
   RMS: 0.532
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.938
   RMS: 0.879
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 4.327
   RMS: 0.900
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 4.780
   RMS: 0.948
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.590
   RMS: 0.627
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 4.319
   RMS: 0.628
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 3.797
   RMS: 0.443
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 3.523
   RMS: 0.409
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.092
   RMS: 1.092
   RMS: 3.746
   RMS: 1.092
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 3.574
   RMS: 0.532
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 3.914
   RMS: 0.551
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.473
   RMS: 0.745
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 3.872
   RMS: 0.818
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 3.382
   RMS: 0.453
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 4.111
   RMS: 0.577
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.415
   RMS: 0.754
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.883
   RMS: 0.910
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 4.459
   RMS: 0.964
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 3.614
   RMS: 0.864
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.447
   RMS: 0.438
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.072
   RMS: 2.072
   RMS: 13.578
   RMS: 2.072
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 4.158
   RMS: 0.810
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 4.247
   RMS: 0.900
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 3.963
   RMS: 0.406
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 4.951
   RMS: 0.965
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 4.619
   RMS: 1.059
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 4.122
   RMS: 0.987
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 3.559
   RMS: 0.859
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 4.058
   RMS: 0.901
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.646
   RMS: 1.646
   RMS: 4.432
   RMS: 1.646
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 1.443
   RMS: 0.421
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 3.290
   RMS: 0.538
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 4.420
   RMS: 0.932
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.976
   RMS: 0.399
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.347
   RMS: 0.531
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 3.493
   RMS: 0.371
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.546
   RMS: 0.833
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 3.908
   RMS: 0.675
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.563
   RMS: 0.760
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.374
   RMS: 0.861
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 4.010
   RMS: 0.845
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 3.075
   RMS: 0.449
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 3.875
   RMS: 0.626
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.138
   RMS: 1.138
   RMS: 4.025
   RMS: 1.138
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 4.119
   RMS: 0.910
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.911
   RMS: 0.815
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 4.087
   RMS: 0.823
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 4.483
   RMS: 0.832
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 4.581
   RMS: 0.714
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 4.150
   RMS: 0.433
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 3.474
   RMS: 0.435
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 3.945
   RMS: 0.924
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 3.720
   RMS: 0.887
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.582
   RMS: 0.756
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.868
   RMS: 0.706
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 1.481
   RMS: 0.406
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 3.515
   RMS: 0.475
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 4.249
   RMS: 0.968
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 3.923
   RMS: 0.968
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 3.992
   RMS: 0.640
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 3.831
   RMS: 0.454
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 3.627
   RMS: 0.410
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 4.029
   RMS: 0.621
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 4.064
   RMS: 0.617
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 3.495
   RMS: 0.575
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 4.387
   RMS: 0.856
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 4.247
   RMS: 0.888
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 5.070
   RMS: 0.944
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.740
   RMS: 0.470
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 4.218
   RMS: 0.861
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.811
   RMS: 0.722
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.869
   RMS: 0.814
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 4.154
   RMS: 0.404
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 4.021
   RMS: 0.611
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 4.227
   RMS: 0.819
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 3.689
   RMS: 0.900
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 3.823
   RMS: 0.637
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 3.143
   RMS: 0.540
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 1.171
   RMS: 0.406
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 3.257
   RMS: 0.551
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 3.742
   RMS: 0.433
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 2.067
   RMS: 0.736
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 3.879
   RMS: 0.599
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 4.397
   RMS: 0.888
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 3.961
   RMS: 0.566
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 4.108
   RMS: 0.765
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.253
   RMS: 0.453
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.540
   RMS: 0.469
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 3.582
   RMS: 0.469
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 4.049
   RMS: 0.814
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 4.117
   RMS: 0.788
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 4.145
   RMS: 0.927
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 3.758
   RMS: 0.922
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.904
   RMS: 0.815
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 4.273
   RMS: 0.968
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 4.229
   RMS: 0.926
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 3.843
   RMS: 0.901
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 3.759
   RMS: 0.411
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 3.520
   RMS: 0.468
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 2.316
   RMS: 0.896
   Unrecognised keyword: pdb1a3r_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.718
   RMS: 0.889
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1a6t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.376
   RMS: 0.490
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.897
   RMS: 0.498
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 0.671
   RMS: 0.938
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.937
   RMS: 0.849
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.915
   RMS: 0.425
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.919
   RMS: 0.819
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.586
   RMS: 0.605
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.799
   RMS: 0.571
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 3.063
   RMS: 0.945
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.876
   RMS: 0.539
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.505
   RMS: 0.701
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.503
   RMS: 0.833
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 2.554
   RMS: 0.481
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.519
   RMS: 0.777
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.732
   RMS: 0.459
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.022
   RMS: 0.752
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.087
   RMS: 0.717
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.459
   RMS: 0.457
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.914
   RMS: 0.789
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.821
   RMS: 0.756
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.526
   RMS: 0.787
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.854
   RMS: 0.367
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 0.849
   RMS: 0.907
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.916
   RMS: 0.832
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.080
   RMS: 0.813
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 0.746
   RMS: 0.342
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.034
   RMS: 0.717
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.788
   RMS: 0.576
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.569
   RMS: 0.453
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.873
   RMS: 0.480
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.527
   RMS: 0.676
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.185
   RMS: 0.921
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.886
   RMS: 0.725
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.292
   RMS: 0.844
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.643
   RMS: 0.700
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 2.055
   RMS: 0.993
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.599
   RMS: 0.486
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 4.354
   RMS: 0.586
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.827
   RMS: 0.515
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 0.662
   RMS: 0.529
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.326
   RMS: 0.773
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 3.371
   RMS: 0.574
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.493
   RMS: 0.844
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.451
   RMS: 0.739
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.751
   RMS: 0.483
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.645
   RMS: 0.797
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.865
   RMS: 0.797
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.655
   RMS: 0.799
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.329
   RMS: 0.439
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.839
   RMS: 0.700
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.448
   RMS: 0.672
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.743
   RMS: 0.905
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.601
   RMS: 0.525
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.881
   RMS: 5.881
   RMS: 16.628
   RMS: 5.881
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.970
   RMS: 0.789
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.658
   RMS: 0.544
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.939
   RMS: 0.802
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.660
   RMS: 0.616
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.576
   RMS: 0.740
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.485
   RMS: 0.787
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.779
   RMS: 0.465
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.771
   RMS: 0.454
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.984
   RMS: 0.798
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.032
   RMS: 0.764
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.658
   RMS: 0.828
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.932
   RMS: 0.727
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.908
   RMS: 0.521
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 4.098
   RMS: 0.340
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.709
   RMS: 0.774
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.898
   RMS: 0.450
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.694
   RMS: 0.703
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.552
   RMS: 0.570
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.675
   RMS: 0.427
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.854
   RMS: 0.779
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.836
   RMS: 0.746
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.348
   RMS: 0.890
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.618
   RMS: 0.689
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.385
   RMS: 0.729
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.958
   RMS: 0.742
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.353
   RMS: 0.762
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 3.512
   RMS: 0.650
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.904
   RMS: 0.549
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.491
   RMS: 0.534
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.447
   RMS: 0.439
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 0.667
   RMS: 0.958
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.455
   RMS: 0.530
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.532
   RMS: 0.556
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.509
   RMS: 0.733
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.477
   RMS: 0.847
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.633
   RMS: 0.583
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.735
   RMS: 0.460
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.842
   RMS: 0.614
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 2.832
   RMS: 0.896
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.341
   RMS: 0.775
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.703
   RMS: 0.843
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 3.536
   RMS: 0.500
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.059
   RMS: 2.059
   RMS: 13.558
   RMS: 2.059
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.792
   RMS: 0.616
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.122
   RMS: 0.712
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.917
   RMS: 0.496
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.678
   RMS: 0.816
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.271
   RMS: 0.941
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.895
   RMS: 0.830
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.485
   RMS: 0.727
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.819
   RMS: 0.732
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.741
   RMS: 1.741
   RMS: 1.316
   RMS: 1.741
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.340
   RMS: 0.598
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.286
   RMS: 0.286
   RMS: 0.815
   RMS: 0.286
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.183
   RMS: 0.749
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.433
   RMS: 0.556
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 3.201
   RMS: 0.533
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.730
   RMS: 0.555
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.639
   RMS: 0.848
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.532
   RMS: 0.416
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 2.972
   RMS: 0.771
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.855
   RMS: 0.740
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.033
   RMS: 0.677
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 1.111
   RMS: 0.461
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.738
   RMS: 0.476
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 0.702
   RMS: 1.035
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.829
   RMS: 0.726
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.514
   RMS: 0.806
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.613
   RMS: 0.820
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.083
   RMS: 0.843
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.246
   RMS: 0.648
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 1.057
   RMS: 0.532
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.630
   RMS: 0.510
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.570
   RMS: 0.739
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.654
   RMS: 0.759
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.584
   RMS: 0.611
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.604
   RMS: 0.583
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 3.787
   RMS: 0.567
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.726
   RMS: 0.624
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.921
   RMS: 0.795
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.405
   RMS: 0.935
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.624
   RMS: 0.678
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.418
   RMS: 0.511
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.678
   RMS: 0.519
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.501
   RMS: 0.465
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.038
   RMS: 0.606
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.972
   RMS: 0.661
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.949
   RMS: 0.659
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.972
   RMS: 0.699
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.927
   RMS: 0.771
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.445
   RMS: 0.470
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.774
   RMS: 0.791
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.275
   RMS: 0.687
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.631
   RMS: 0.794
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 1.056
   RMS: 0.570
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.715
   RMS: 0.530
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.904
   RMS: 0.676
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.398
   RMS: 0.733
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.741
   RMS: 0.513
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.325
   RMS: 0.774
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.360
   RMS: 0.677
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.902
   RMS: 0.376
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.222
   RMS: 0.508
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.576
   RMS: 0.679
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.381
   RMS: 0.538
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.155
   RMS: 0.748
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.376
   RMS: 0.507
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.831
   RMS: 0.662
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 3.660
   RMS: 0.550
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 3.450
   RMS: 0.494
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.607
   RMS: 0.565
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.778
   RMS: 0.720
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.760
   RMS: 0.703
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.770
   RMS: 0.779
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.499
   RMS: 0.764
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.536
   RMS: 0.861
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.994
   RMS: 0.783
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.975
   RMS: 0.917
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.552
   RMS: 0.847
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.579
   RMS: 0.453
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 1.370
   RMS: 0.553
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 2.788
   RMS: 0.903
   Unrecognised keyword: pdb1a4j_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 3.532
   RMS: 0.851
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1a6u_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.699
   RMS: 0.381
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.613
   RMS: 0.911
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.082
   RMS: 0.848
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.705
   RMS: 0.356
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.156
   RMS: 0.887
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.450
   RMS: 0.479
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.611
   RMS: 0.506
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 3.015
   RMS: 0.949
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.687
   RMS: 0.433
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.429
   RMS: 0.744
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.604
   RMS: 0.892
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 2.527
   RMS: 0.348
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.499
   RMS: 0.740
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.564
   RMS: 0.337
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.178
   RMS: 0.743
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.276
   RMS: 0.775
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.528
   RMS: 0.516
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.123
   RMS: 0.839
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.016
   RMS: 0.825
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 3.391
   RMS: 0.759
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.901
   RMS: 0.621
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.919
   RMS: 0.832
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.141
   RMS: 0.919
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.285
   RMS: 0.878
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.732
   RMS: 0.569
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.214
   RMS: 0.779
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.619
   RMS: 0.389
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.665
   RMS: 0.525
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.706
   RMS: 0.610
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.541
   RMS: 0.737
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 1.265
   RMS: 1.013
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.908
   RMS: 0.741
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 3.178
   RMS: 0.788
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.584
   RMS: 0.763
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 2.244
   RMS: 1.031
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.321
   RMS: 0.321
   RMS: 0.327
   RMS: 0.321
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 4.196
   RMS: 0.416
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 1.020
   RMS: 0.337
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.401
   RMS: 0.405
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.498
   RMS: 0.860
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 3.259
   RMS: 0.523
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.543
   RMS: 0.838
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.583
   RMS: 0.716
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.895
   RMS: 0.356
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.620
   RMS: 0.840
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.898
   RMS: 0.740
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.518
   RMS: 0.753
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.503
   RMS: 0.376
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.959
   RMS: 0.584
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.388
   RMS: 0.762
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.696
   RMS: 0.812
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.607
   RMS: 0.605
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.903
   RMS: 5.903
   RMS: 16.794
   RMS: 5.903
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.158
   RMS: 0.768
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 0.531
   RMS: 0.435
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.008
   RMS: 0.863
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.694
   RMS: 0.584
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.375
   RMS: 0.770
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.488
   RMS: 0.804
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.877
   RMS: 0.543
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.879
   RMS: 0.537
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.046
   RMS: 0.712
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.171
   RMS: 0.823
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.921
   RMS: 0.885
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.025
   RMS: 0.730
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 1.144
   RMS: 0.508
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 3.917
   RMS: 0.562
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.912
   RMS: 0.877
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 1.035
   RMS: 0.387
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.895
   RMS: 0.742
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.647
   RMS: 0.403
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.493
   RMS: 0.607
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.870
   RMS: 0.713
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.036
   RMS: 0.788
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 1.524
   RMS: 0.969
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.677
   RMS: 0.572
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.665
   RMS: 0.809
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.117
   RMS: 0.794
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.562
   RMS: 0.823
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 3.391
   RMS: 0.584
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.017
   RMS: 0.455
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.552
   RMS: 0.339
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.309
   RMS: 0.355
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 0.623
   RMS: 1.004
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.250
   RMS: 0.452
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.539
   RMS: 0.413
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.311
   RMS: 0.703
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.486
   RMS: 0.762
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.540
   RMS: 0.405
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.970
   RMS: 0.416
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.645
   RMS: 0.691
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 2.786
   RMS: 0.847
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.564
   RMS: 0.799
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.641
   RMS: 0.827
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 3.393
   RMS: 0.419
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.096
   RMS: 2.096
   RMS: 13.593
   RMS: 2.096
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.944
   RMS: 0.710
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.359
   RMS: 0.785
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 0.884
   RMS: 0.341
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.902
   RMS: 0.845
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 1.464
   RMS: 0.979
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.999
   RMS: 0.889
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.398
   RMS: 0.747
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.931
   RMS: 0.824
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.643
   RMS: 1.643
   RMS: 1.432
   RMS: 1.643
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.269
   RMS: 0.464
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.593
   RMS: 0.487
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.414
   RMS: 0.819
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 3.304
   RMS: 0.430
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 3.068
   RMS: 0.423
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.565
   RMS: 0.399
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.532
   RMS: 0.795
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.697
   RMS: 0.573
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 2.893
   RMS: 0.711
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.718
   RMS: 0.789
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.068
   RMS: 0.766
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.947
   RMS: 0.355
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.819
   RMS: 0.543
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 0.824
   RMS: 1.074
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.950
   RMS: 0.773
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.630
   RMS: 0.762
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.744
   RMS: 0.774
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.211
   RMS: 0.796
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 1.485
   RMS: 0.669
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.200
   RMS: 0.407
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.486
   RMS: 0.354
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.760
   RMS: 0.815
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.652
   RMS: 0.822
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.603
   RMS: 0.658
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.664
   RMS: 0.633
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 3.666
   RMS: 0.425
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.667
   RMS: 0.486
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.085
   RMS: 0.842
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.409
   RMS: 0.866
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.780
   RMS: 0.600
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.482
   RMS: 0.343
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.558
   RMS: 0.428
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.626
   RMS: 0.478
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 1.138
   RMS: 0.548
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.938
   RMS: 0.610
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.099
   RMS: 0.749
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.129
   RMS: 0.779
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 2.173
   RMS: 0.847
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 0.440
   RMS: 0.331
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.940
   RMS: 0.774
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.204
   RMS: 0.688
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.701
   RMS: 0.764
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 1.132
   RMS: 0.490
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.779
   RMS: 0.498
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.073
   RMS: 0.707
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.369
   RMS: 0.794
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.752
   RMS: 0.560
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 1.228
   RMS: 0.676
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 3.244
   RMS: 0.547
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.702
   RMS: 0.563
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.274
   RMS: 0.350
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.492
   RMS: 0.692
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.469
   RMS: 0.517
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.331
   RMS: 0.823
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.614
   RMS: 0.487
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.988
   RMS: 0.682
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 3.518
   RMS: 0.398
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.321
   RMS: 0.321
   RMS: 3.315
   RMS: 0.321
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.501
   RMS: 0.447
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.802
   RMS: 0.691
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.903
   RMS: 0.715
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.899
   RMS: 0.836
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.337
   RMS: 0.839
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.609
   RMS: 0.773
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.146
   RMS: 0.874
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.097
   RMS: 0.877
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.648
   RMS: 0.839
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.302
   RMS: 0.302
   RMS: 0.527
   RMS: 0.302
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.413
   RMS: 0.426
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 2.789
   RMS: 0.845
   Unrecognised keyword: pdb1a6t_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 3.422
   RMS: 0.872
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ai1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.937
   RMS: 0.868
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.658
   RMS: 0.914
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.399
   RMS: 0.416
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.722
   RMS: 0.889
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.687
   RMS: 0.444
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.477
   RMS: 0.354
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 2.976
   RMS: 0.949
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.586
   RMS: 0.438
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.870
   RMS: 0.739
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.026
   RMS: 0.882
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 2.366
   RMS: 0.349
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.029
   RMS: 0.759
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 0.622
   RMS: 0.333
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.749
   RMS: 0.781
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.793
   RMS: 0.774
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.920
   RMS: 0.524
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.715
   RMS: 0.836
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.607
   RMS: 0.849
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.119
   RMS: 0.794
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.295
   RMS: 0.621
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.361
   RMS: 0.852
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.614
   RMS: 0.900
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.814
   RMS: 0.894
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.838
   RMS: 0.489
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.776
   RMS: 0.792
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.817
   RMS: 0.500
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 1.076
   RMS: 0.520
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.240
   RMS: 0.587
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.083
   RMS: 0.739
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.431
   RMS: 1.004
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.262
   RMS: 0.739
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 2.923
   RMS: 0.805
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.935
   RMS: 0.739
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 2.791
   RMS: 1.075
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.712
   RMS: 0.375
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 3.834
   RMS: 0.386
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 1.605
   RMS: 0.415
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.434
   RMS: 0.399
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 2.013
   RMS: 0.863
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 3.016
   RMS: 0.595
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.904
   RMS: 0.793
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.082
   RMS: 0.725
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 1.389
   RMS: 0.401
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.918
   RMS: 0.855
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.378
   RMS: 0.783
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 3.246
   RMS: 0.778
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.991
   RMS: 0.401
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.073
   RMS: 0.546
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.806
   RMS: 0.789
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.553
   RMS: 0.811
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.064
   RMS: 0.606
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.830
   RMS: 5.830
   RMS: 16.757
   RMS: 5.830
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.757
   RMS: 0.810
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.446
   RMS: 0.396
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.505
   RMS: 0.885
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.999
   RMS: 0.489
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.557
   RMS: 0.785
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.917
   RMS: 0.814
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 1.415
   RMS: 0.551
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 1.402
   RMS: 0.557
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.547
   RMS: 0.770
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.704
   RMS: 0.831
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 2.227
   RMS: 0.886
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.485
   RMS: 0.691
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.738
   RMS: 0.597
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.514
   RMS: 0.535
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.418
   RMS: 0.869
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 1.495
   RMS: 0.423
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.474
   RMS: 0.748
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.117
   RMS: 0.462
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.481
   RMS: 0.578
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.257
   RMS: 0.737
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.652
   RMS: 0.803
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 2.048
   RMS: 0.985
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.887
   RMS: 0.532
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.170
   RMS: 0.785
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.695
   RMS: 0.834
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 2.131
   RMS: 0.870
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.202
   RMS: 0.619
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.452
   RMS: 0.552
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.963
   RMS: 0.324
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 0.566
   RMS: 0.333
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 0.943
   RMS: 1.026
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.613
   RMS: 0.433
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.942
   RMS: 0.505
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.591
   RMS: 0.695
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.975
   RMS: 0.782
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.633
   RMS: 0.376
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 1.542
   RMS: 0.505
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.821
   RMS: 0.677
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 2.685
   RMS: 0.885
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 2.078
   RMS: 0.877
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.065
   RMS: 0.840
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.294
   RMS: 0.294
   RMS: 3.053
   RMS: 0.294
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.037
   RMS: 2.037
   RMS: 13.156
   RMS: 2.037
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.461
   RMS: 0.729
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.555
   RMS: 0.796
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 1.111
   RMS: 0.309
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 2.473
   RMS: 0.874
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 2.030
   RMS: 0.986
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.515
   RMS: 0.905
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.698
   RMS: 0.771
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.464
   RMS: 0.810
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.626
   RMS: 1.626
   RMS: 1.599
   RMS: 1.626
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 3.099
   RMS: 0.384
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.268
   RMS: 0.485
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.990
   RMS: 0.844
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 2.964
   RMS: 0.339
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 2.754
   RMS: 0.438
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.818
   RMS: 0.391
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.541
   RMS: 0.792
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.999
   RMS: 0.625
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 2.723
   RMS: 0.746
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.488
   RMS: 0.815
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.624
   RMS: 0.759
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.358
   RMS: 0.318
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.888
   RMS: 0.565
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 1.367
   RMS: 1.062
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.514
   RMS: 0.818
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.070
   RMS: 0.798
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.273
   RMS: 0.810
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.733
   RMS: 0.792
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 2.082
   RMS: 0.649
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.606
   RMS: 0.363
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.304
   RMS: 0.304
   RMS: 0.411
   RMS: 0.304
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.279
   RMS: 0.843
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.068
   RMS: 0.802
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.996
   RMS: 0.650
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.181
   RMS: 0.627
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 3.430
   RMS: 0.380
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.644
   RMS: 0.426
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.648
   RMS: 0.880
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 1.207
   RMS: 0.968
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 1.304
   RMS: 0.656
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 1.014
   RMS: 0.384
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.305
   RMS: 0.305
   RMS: 0.715
   RMS: 0.305
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 1.155
   RMS: 0.570
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.499
   RMS: 0.605
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.750
   RMS: 0.580
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 1.649
   RMS: 0.761
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.697
   RMS: 0.809
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 2.531
   RMS: 0.859
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.968
   RMS: 0.394
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.431
   RMS: 0.797
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.116
   RMS: 0.705
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.266
   RMS: 0.770
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 1.523
   RMS: 0.428
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.291
   RMS: 0.576
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.589
   RMS: 0.763
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.762
   RMS: 0.826
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.326
   RMS: 0.610
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.144
   RMS: 0.647
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 3.028
   RMS: 0.506
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.245
   RMS: 0.524
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.865
   RMS: 0.355
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 3.407
   RMS: 0.702
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.975
   RMS: 0.573
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.893
   RMS: 0.827
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 1.093
   RMS: 0.530
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.537
   RMS: 0.685
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 3.191
   RMS: 0.338
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 2.995
   RMS: 0.375
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.701
   RMS: 0.483
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.139
   RMS: 0.744
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.449
   RMS: 0.727
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.409
   RMS: 0.840
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.879
   RMS: 0.832
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.160
   RMS: 0.794
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.669
   RMS: 0.879
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.618
   RMS: 0.887
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.199
   RMS: 0.837
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.327
   RMS: 0.327
   RMS: 0.739
   RMS: 0.327
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.668
   RMS: 0.468
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 2.785
   RMS: 0.868
   Unrecognised keyword: pdb1a6u_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.125
   RMS: 0.839
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1clo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 0.850
   RMS: 1.046
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.965
   RMS: 0.846
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 1.214
   RMS: 1.047
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.817
   RMS: 0.896
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.064
   RMS: 0.784
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.135
   RMS: 1.135
   RMS: 3.041
   RMS: 1.135
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.745
   RMS: 0.942
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.369
   RMS: 0.865
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 0.416
   RMS: 1.031
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 2.558
   RMS: 0.893
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.404
   RMS: 0.478
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.679
   RMS: 0.942
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.098
   RMS: 0.627
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.167
   RMS: 0.848
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.625
   RMS: 0.761
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.109
   RMS: 0.998
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.018
   RMS: 0.987
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 3.490
   RMS: 0.600
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.130
   RMS: 0.947
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.811
   RMS: 0.672
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 0.931
   RMS: 1.040
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 1.304
   RMS: 0.992
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 0.710
   RMS: 0.962
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 1.086
   RMS: 0.936
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.023
   RMS: 0.864
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.689
   RMS: 0.794
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 0.974
   RMS: 0.946
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 0.845
   RMS: 0.918
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.119
   RMS: 1.119
   RMS: 1.118
   RMS: 1.119
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.732
   RMS: 0.675
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.252
   RMS: 0.563
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.533
   RMS: 0.893
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.138
   RMS: 1.138
   RMS: 2.034
   RMS: 1.138
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.540
   RMS: 0.921
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 4.302
   RMS: 0.899
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.071
   RMS: 0.947
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 0.651
   RMS: 0.952
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.196
   RMS: 1.005
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.324
   RMS: 0.794
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.537
   RMS: 0.596
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.657
   RMS: 0.618
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.809
   RMS: 0.921
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 0.414
   RMS: 0.938
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.822
   RMS: 0.485
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.585
   RMS: 0.464
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.653
   RMS: 0.843
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 0.874
   RMS: 1.004
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 0.607
   RMS: 0.971
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 1.402
   RMS: 1.111
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.842
   RMS: 0.893
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.888
   RMS: 5.888
   RMS: 16.818
   RMS: 5.888
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.160
   RMS: 0.733
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.801
   RMS: 0.943
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 0.747
   RMS: 1.003
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.603
   RMS: 0.912
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.632
   RMS: 0.950
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.600
   RMS: 0.899
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.036
   RMS: 0.814
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.030
   RMS: 0.825
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 0.894
   RMS: 0.615
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.857
   RMS: 0.909
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.929
   RMS: 0.977
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 1.174
   RMS: 0.585
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.157
   RMS: 0.812
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 4.055
   RMS: 0.889
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.122
   RMS: 1.122
   RMS: 0.980
   RMS: 1.122
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.814
   RMS: 0.897
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.823
   RMS: 0.891
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 0.869
   RMS: 1.049
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.885
   RMS: 0.913
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.821
   RMS: 0.587
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.127
   RMS: 0.872
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.095
   RMS: 1.095
   RMS: 1.227
   RMS: 1.095
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.626
   RMS: 0.920
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.688
   RMS: 0.999
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 0.964
   RMS: 0.939
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.434
   RMS: 0.956
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.509
   RMS: 0.845
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.919
   RMS: 0.900
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.473
   RMS: 0.833
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.674
   RMS: 0.825
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.252
   RMS: 1.252
   RMS: 0.925
   RMS: 1.252
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 0.616
   RMS: 0.925
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.580
   RMS: 0.805
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.797
   RMS: 0.683
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.495
   RMS: 0.556
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.922
   RMS: 0.967
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 1.194
   RMS: 0.928
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.936
   RMS: 0.766
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 2.818
   RMS: 0.718
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.499
   RMS: 0.990
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.778
   RMS: 0.827
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 3.542
   RMS: 0.926
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.113
   RMS: 2.113
   RMS: 13.808
   RMS: 2.113
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 0.732
   RMS: 0.946
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.413
   RMS: 0.972
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 0.635
   RMS: 0.944
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 1.739
   RMS: 1.009
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.451
   RMS: 1.057
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.032
   RMS: 1.032
   RMS: 1.101
   RMS: 1.032
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.396
   RMS: 0.890
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 0.871
   RMS: 0.963
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.826
   RMS: 1.826
   RMS: 1.314
   RMS: 1.826
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 3.291
   RMS: 0.859
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.974
   RMS: 0.921
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 1.550
   RMS: 1.041
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.407
   RMS: 0.903
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.125
   RMS: 0.941
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 0.897
   RMS: 0.940
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.654
   RMS: 0.874
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 0.877
   RMS: 1.041
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 2.928
   RMS: 0.593
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.762
   RMS: 0.879
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.062
   RMS: 0.875
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.140
   RMS: 0.938
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.049
   RMS: 0.960
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.100
   RMS: 1.100
   RMS: 0.938
   RMS: 1.100
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.750
   RMS: 0.965
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.528
   RMS: 0.568
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.617
   RMS: 0.547
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.018
   RMS: 0.536
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.485
   RMS: 0.821
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.172
   RMS: 0.941
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.781
   RMS: 0.927
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.868
   RMS: 0.983
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.045
   RMS: 0.887
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.936
   RMS: 0.789
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.436
   RMS: 0.759
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 3.814
   RMS: 0.939
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.742
   RMS: 0.845
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 0.999
   RMS: 0.992
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.171
   RMS: 1.171
   RMS: 1.365
   RMS: 1.171
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.806
   RMS: 0.735
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.573
   RMS: 0.852
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.456
   RMS: 0.862
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.665
   RMS: 0.786
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.342
   RMS: 0.827
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.274
   RMS: 0.852
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.056
   RMS: 0.915
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.084
   RMS: 0.956
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 2.080
   RMS: 0.988
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 0.709
   RMS: 0.954
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.997
   RMS: 0.691
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 3.208
   RMS: 0.626
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 0.738
   RMS: 0.566
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.880
   RMS: 0.872
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.937
   RMS: 0.758
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.955
   RMS: 0.847
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 0.693
   RMS: 0.956
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.903
   RMS: 0.765
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.562
   RMS: 0.938
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 3.317
   RMS: 1.006
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.031
   RMS: 0.931
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.597
   RMS: 0.889
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.550
   RMS: 0.717
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.512
   RMS: 0.716
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.266
   RMS: 0.926
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.843
   RMS: 0.799
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.884
   RMS: 0.828
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 3.665
   RMS: 0.900
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.425
   RMS: 0.889
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.622
   RMS: 0.903
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.708
   RMS: 0.758
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.833
   RMS: 0.840
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 0.789
   RMS: 1.007
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 0.626
   RMS: 1.046
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.555
   RMS: 0.560
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.079
   RMS: 1.035
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.756
   RMS: 0.856
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 0.722
   RMS: 1.022
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.729
   RMS: 0.947
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.543
   RMS: 0.926
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 2.749
   RMS: 0.558
   Unrecognised keyword: pdb1ai1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 3.530
   RMS: 0.699
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ad9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.618
   RMS: 0.831
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 0.837
   RMS: 1.047
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 1.350
   RMS: 0.959
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.640
   RMS: 0.994
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.158
   RMS: 1.158
   RMS: 3.340
   RMS: 1.158
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.373
   RMS: 0.919
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.872
   RMS: 0.900
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 0.720
   RMS: 1.019
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 2.949
   RMS: 0.871
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.755
   RMS: 0.845
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.257
   RMS: 0.911
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.585
   RMS: 0.842
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 0.737
   RMS: 0.988
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.899
   RMS: 0.788
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 0.731
   RMS: 1.015
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.628
   RMS: 0.999
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 4.008
   RMS: 0.919
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.258
   RMS: 0.841
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.090
   RMS: 1.090
   RMS: 0.749
   RMS: 1.090
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 0.572
   RMS: 1.049
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 0.986
   RMS: 1.022
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.160
   RMS: 0.886
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 0.528
   RMS: 0.932
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.453
   RMS: 0.895
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.805
   RMS: 0.821
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.624
   RMS: 0.976
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.019
   RMS: 0.925
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.117
   RMS: 1.117
   RMS: 1.167
   RMS: 1.117
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.767
   RMS: 0.972
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.729
   RMS: 0.966
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.910
   RMS: 0.965
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.318
   RMS: 0.777
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.115
   RMS: 0.845
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 4.852
   RMS: 0.924
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.694
   RMS: 0.906
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.310
   RMS: 0.917
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 0.503
   RMS: 0.941
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.777
   RMS: 0.824
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.029
   RMS: 1.029
   RMS: 0.940
   RMS: 1.029
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.779
   RMS: 0.909
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.542
   RMS: 0.861
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 0.891
   RMS: 0.949
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.771
   RMS: 0.917
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 4.102
   RMS: 0.892
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.844
   RMS: 0.849
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.236
   RMS: 0.973
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.077
   RMS: 0.824
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.831
   RMS: 0.977
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.024
   RMS: 0.781
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.973
   RMS: 5.973
   RMS: 16.651
   RMS: 5.973
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 0.680
   RMS: 1.026
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.421
   RMS: 0.917
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 0.446
   RMS: 1.005
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.933
   RMS: 0.924
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 1.196
   RMS: 0.967
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 0.897
   RMS: 0.964
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.917
   RMS: 0.826
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.909
   RMS: 0.812
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 0.848
   RMS: 1.004
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.348
   RMS: 0.813
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 1.638
   RMS: 0.999
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.206
   RMS: 0.955
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.609
   RMS: 0.868
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 4.668
   RMS: 0.808
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 0.762
   RMS: 0.996
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.635
   RMS: 0.896
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.406
   RMS: 0.805
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 0.887
   RMS: 0.953
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.473
   RMS: 0.945
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 1.038
   RMS: 0.959
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 0.810
   RMS: 0.941
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 0.605
   RMS: 1.018
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 1.068
   RMS: 1.021
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 0.706
   RMS: 0.959
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 0.380
   RMS: 0.944
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 0.793
   RMS: 0.931
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.933
   RMS: 0.965
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.703
   RMS: 0.803
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.779
   RMS: 0.911
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.230
   RMS: 0.858
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.145
   RMS: 1.145
   RMS: 1.177
   RMS: 1.145
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.180
   RMS: 0.831
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.923
   RMS: 0.826
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 1.295
   RMS: 1.038
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.816
   RMS: 0.983
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.450
   RMS: 0.907
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.944
   RMS: 0.804
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.440
   RMS: 0.825
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 3.143
   RMS: 0.970
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.067
   RMS: 0.870
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 1.121
   RMS: 1.047
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 4.088
   RMS: 0.899
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.180
   RMS: 2.180
   RMS: 14.189
   RMS: 2.180
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.412
   RMS: 0.868
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.419
   RMS: 0.908
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 0.949
   RMS: 0.907
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.024
   RMS: 0.956
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.115
   RMS: 1.115
   RMS: 0.946
   RMS: 1.115
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 0.958
   RMS: 1.040
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.045
   RMS: 0.780
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 0.695
   RMS: 0.978
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.914
   RMS: 1.914
   RMS: 1.350
   RMS: 1.914
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 3.687
   RMS: 0.938
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.620
   RMS: 0.875
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.108
   RMS: 0.913
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 3.949
   RMS: 0.927
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.648
   RMS: 0.951
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.332
   RMS: 0.927
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.159
   RMS: 1.159
   RMS: 1.229
   RMS: 1.159
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.152
   RMS: 0.894
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.301
   RMS: 0.886
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.486
   RMS: 0.947
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.962
   RMS: 0.886
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.877
   RMS: 0.882
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 1.415
   RMS: 0.934
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.228
   RMS: 1.228
   RMS: 0.817
   RMS: 1.228
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 0.373
   RMS: 0.939
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.708
   RMS: 0.922
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 0.476
   RMS: 0.908
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 0.466
   RMS: 0.956
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 0.885
   RMS: 0.964
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 1.034
   RMS: 0.930
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 1.386
   RMS: 0.957
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 0.891
   RMS: 0.981
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 1.264
   RMS: 0.966
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.229
   RMS: 0.851
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.551
   RMS: 0.768
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 4.277
   RMS: 0.935
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.313
   RMS: 0.915
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.600
   RMS: 0.951
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 1.786
   RMS: 1.120
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.712
   RMS: 0.818
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.814
   RMS: 0.853
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.062
   RMS: 0.912
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.646
   RMS: 0.836
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.346
   RMS: 0.820
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.799
   RMS: 0.945
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.643
   RMS: 0.903
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 0.683
   RMS: 0.926
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.668
   RMS: 0.913
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.957
   RMS: 0.862
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 0.797
   RMS: 1.059
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 3.523
   RMS: 0.876
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 0.769
   RMS: 0.973
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 0.690
   RMS: 0.937
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.878
   RMS: 0.868
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.708
   RMS: 0.752
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.048
   RMS: 0.904
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.929
   RMS: 0.824
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 2.080
   RMS: 1.120
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.748
   RMS: 0.969
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.721
   RMS: 0.883
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.925
   RMS: 0.847
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 3.860
   RMS: 0.912
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.740
   RMS: 0.848
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.810
   RMS: 0.967
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.924
   RMS: 0.878
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 0.622
   RMS: 0.958
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 4.212
   RMS: 0.887
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 3.957
   RMS: 0.848
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.141
   RMS: 0.872
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 0.831
   RMS: 1.014
   Unrecognised keyword: pdb1clo_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.616
   RMS: 0.903
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 0.616
   RMS: 0.958
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 0.985
   RMS: 0.962
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 0.642
   RMS: 1.002
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 0.827
   RMS: 1.023
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 0.348
   RMS: 1.035
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 0.796
   RMS: 0.987
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.183
   RMS: 0.915
   Unrecognised keyword: pdb1clo_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.669
   RMS: 0.830
   Unrecognised keyword: pdb1clo_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 2.965
   RMS: 0.994
   Unrecognised keyword: pdb1clo_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.147
   RMS: 1.147
   RMS: 4.049
   RMS: 1.147
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1adq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.635
   RMS: 0.857
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.692
   RMS: 0.527
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.486
   RMS: 0.482
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 2.894
   RMS: 0.933
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.487
   RMS: 0.421
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.805
   RMS: 0.700
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.086
   RMS: 0.851
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 2.334
   RMS: 0.338
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.023
   RMS: 0.670
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.685
   RMS: 0.353
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.678
   RMS: 0.661
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.654
   RMS: 0.686
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.920
   RMS: 0.440
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.648
   RMS: 0.786
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.502
   RMS: 0.776
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.105
   RMS: 0.681
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.090
   RMS: 0.546
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.265
   RMS: 0.786
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.571
   RMS: 0.867
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.674
   RMS: 0.846
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.927
   RMS: 0.514
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.706
   RMS: 0.725
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.562
   RMS: 0.383
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.053
   RMS: 0.450
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 0.422
   RMS: 0.566
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.953
   RMS: 0.675
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.437
   RMS: 0.973
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.205
   RMS: 0.641
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 2.949
   RMS: 0.737
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.869
   RMS: 0.714
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 2.699
   RMS: 1.000
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 0.608
   RMS: 0.365
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 3.968
   RMS: 0.471
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 1.504
   RMS: 0.394
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 0.407
   RMS: 0.434
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.985
   RMS: 0.816
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 2.953
   RMS: 0.443
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.796
   RMS: 0.765
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.013
   RMS: 0.635
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 1.355
   RMS: 0.379
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.805
   RMS: 0.792
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.175
   RMS: 0.661
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 3.147
   RMS: 0.675
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.944
   RMS: 0.382
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 1.058
   RMS: 0.634
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.845
   RMS: 0.683
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.685
   RMS: 0.814
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.879
   RMS: 0.535
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.862
   RMS: 5.862
   RMS: 16.753
   RMS: 5.862
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.639
   RMS: 0.710
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.464
   RMS: 0.452
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.446
   RMS: 0.826
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.076
   RMS: 0.574
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.654
   RMS: 0.695
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.911
   RMS: 0.763
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.238
   RMS: 0.417
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.222
   RMS: 0.414
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.425
   RMS: 0.673
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.618
   RMS: 0.775
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 2.127
   RMS: 0.833
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.364
   RMS: 0.659
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 1.691
   RMS: 0.421
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 3.507
   RMS: 0.497
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.316
   RMS: 0.817
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 1.347
   RMS: 0.391
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.401
   RMS: 0.688
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.995
   RMS: 0.480
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.524
   RMS: 0.579
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.079
   RMS: 0.658
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.567
   RMS: 0.727
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.934
   RMS: 0.945
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.894
   RMS: 0.583
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.186
   RMS: 0.774
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.601
   RMS: 0.747
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 2.068
   RMS: 0.787
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 3.034
   RMS: 0.547
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 1.411
   RMS: 0.391
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.893
   RMS: 0.394
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 0.571
   RMS: 0.340
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 0.723
   RMS: 0.970
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.639
   RMS: 0.458
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 0.946
   RMS: 0.377
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.557
   RMS: 0.584
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.922
   RMS: 0.695
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.680
   RMS: 0.478
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 1.438
   RMS: 0.383
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.663
   RMS: 0.603
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 2.592
   RMS: 0.791
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.940
   RMS: 0.767
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.942
   RMS: 0.771
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 3.037
   RMS: 0.419
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.067
   RMS: 2.067
   RMS: 13.313
   RMS: 2.067
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.394
   RMS: 0.678
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.441
   RMS: 0.741
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.162
   RMS: 0.392
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 2.376
   RMS: 0.818
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.904
   RMS: 0.944
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.337
   RMS: 0.848
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.821
   RMS: 0.693
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.322
   RMS: 0.773
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.674
   RMS: 1.674
   RMS: 1.707
   RMS: 1.674
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 2.995
   RMS: 0.502
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.497
   RMS: 0.428
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.868
   RMS: 0.758
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 3.001
   RMS: 0.477
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 2.644
   RMS: 0.460
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.559
   RMS: 0.396
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.514
   RMS: 0.736
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 1.005
   RMS: 0.559
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 2.590
   RMS: 0.633
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.574
   RMS: 0.718
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.480
   RMS: 0.716
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.572
   RMS: 0.363
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.926
   RMS: 0.544
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.212
   RMS: 1.035
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.415
   RMS: 0.741
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.013
   RMS: 0.705
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.259
   RMS: 0.711
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 1.678
   RMS: 0.738
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.977
   RMS: 0.620
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 1.418
   RMS: 0.400
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 0.350
   RMS: 0.352
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.179
   RMS: 0.779
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.923
   RMS: 0.779
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.925
   RMS: 0.574
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 1.120
   RMS: 0.583
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 3.291
   RMS: 0.434
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.554
   RMS: 0.495
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.515
   RMS: 0.793
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.344
   RMS: 0.933
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 1.198
   RMS: 0.500
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.923
   RMS: 0.369
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.705
   RMS: 0.451
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 1.098
   RMS: 0.348
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 1.317
   RMS: 0.469
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.779
   RMS: 0.512
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.565
   RMS: 0.685
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.548
   RMS: 0.726
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 2.382
   RMS: 0.803
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.833
   RMS: 0.354
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.309
   RMS: 0.696
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 2.973
   RMS: 0.631
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.142
   RMS: 0.696
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 1.382
   RMS: 0.492
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 1.108
   RMS: 0.356
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.483
   RMS: 0.671
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.675
   RMS: 0.718
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.167
   RMS: 0.472
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.120
   RMS: 0.660
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 2.940
   RMS: 0.567
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.404
   RMS: 0.493
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.840
   RMS: 0.360
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 3.232
   RMS: 0.668
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.947
   RMS: 0.393
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 1.741
   RMS: 0.772
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.080
   RMS: 0.363
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 1.414
   RMS: 0.651
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 3.163
   RMS: 0.391
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 2.977
   RMS: 0.356
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.552
   RMS: 0.467
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.162
   RMS: 0.605
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 1.323
   RMS: 0.652
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.303
   RMS: 0.791
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.919
   RMS: 0.798
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.067
   RMS: 0.706
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.547
   RMS: 0.818
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.593
   RMS: 0.849
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.074
   RMS: 0.821
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.821
   RMS: 0.350
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 1.496
   RMS: 0.443
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 2.647
   RMS: 0.800
   Unrecognised keyword: pdb1ad9_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.073
   RMS: 0.802
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1afv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 1.307
   RMS: 1.016
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.515
   RMS: 0.913
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 3.450
   RMS: 0.595
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.566
   RMS: 0.828
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 1.048
   RMS: 0.442
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.964
   RMS: 0.375
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.093
   RMS: 0.906
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.063
   RMS: 0.952
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.497
   RMS: 0.882
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 0.516
   RMS: 1.019
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.545
   RMS: 0.606
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 1.019
   RMS: 0.715
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.277
   RMS: 0.454
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.295
   RMS: 0.400
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 4.100
   RMS: 1.010
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.850
   RMS: 0.895
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.737
   RMS: 0.894
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.617
   RMS: 0.506
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.586
   RMS: 0.371
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.471
   RMS: 0.850
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.560
   RMS: 0.407
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.305
   RMS: 0.860
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.966
   RMS: 0.703
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.683
   RMS: 0.828
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 0.775
   RMS: 0.390
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 1.366
   RMS: 0.539
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.138
   RMS: 0.778
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 3.925
   RMS: 0.939
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.043
   RMS: 0.482
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.330
   RMS: 0.951
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 1.250
   RMS: 0.936
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 5.071
   RMS: 1.016
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.237
   RMS: 0.909
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.410
   RMS: 0.948
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 1.139
   RMS: 0.416
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.850
   RMS: 0.890
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.944
   RMS: 0.766
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 0.817
   RMS: 0.984
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.872
   RMS: 0.870
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.139
   RMS: 0.458
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 0.861
   RMS: 0.940
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 4.090
   RMS: 0.951
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.793
   RMS: 0.876
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.168
   RMS: 1.168
   RMS: 1.308
   RMS: 1.168
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 1.234
   RMS: 0.503
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.221
   RMS: 1.221
   RMS: 2.310
   RMS: 1.221
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.818
   RMS: 0.526
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.902
   RMS: 5.902
   RMS: 16.371
   RMS: 5.902
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.290
   RMS: 0.821
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.379
   RMS: 0.941
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 1.007
   RMS: 0.449
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.128
   RMS: 1.128
   RMS: 1.155
   RMS: 1.128
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 1.336
   RMS: 0.465
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.018
   RMS: 0.450
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.593
   RMS: 0.782
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.607
   RMS: 0.780
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.886
   RMS: 0.881
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.860
   RMS: 0.487
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.231
   RMS: 0.414
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.745
   RMS: 0.767
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.384
   RMS: 0.848
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 4.707
   RMS: 0.899
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.505
   RMS: 0.404
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.851
   RMS: 0.899
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.550
   RMS: 0.492
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.852
   RMS: 0.863
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.389
   RMS: 0.856
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.999
   RMS: 0.745
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.421
   RMS: 0.480
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.893
   RMS: 0.550
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.044
   RMS: 0.898
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.674
   RMS: 0.422
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.569
   RMS: 0.491
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.714
   RMS: 0.415
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 3.837
   RMS: 0.971
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.953
   RMS: 0.830
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 0.935
   RMS: 0.953
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.176
   RMS: 0.875
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.055
   RMS: 0.611
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.175
   RMS: 0.890
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.978
   RMS: 0.890
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.220
   RMS: 0.833
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.866
   RMS: 0.917
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.324
   RMS: 0.924
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.409
   RMS: 0.816
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 1.304
   RMS: 0.652
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 3.261
   RMS: 0.975
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.668
   RMS: 0.519
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.002
   RMS: 0.919
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 4.130
   RMS: 0.907
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.982
   RMS: 1.982
   RMS: 13.842
   RMS: 1.982
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.662
   RMS: 0.498
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 1.077
   RMS: 0.405
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.394
   RMS: 0.891
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.928
   RMS: 0.492
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.473
   RMS: 0.478
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.539
   RMS: 0.407
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.273
   RMS: 0.515
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.552
   RMS: 0.389
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.824
   RMS: 1.824
   RMS: 1.393
   RMS: 1.824
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 3.721
   RMS: 1.008
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.642
   RMS: 0.891
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.453
   RMS: 0.490
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.060
   RMS: 1.060
   RMS: 4.092
   RMS: 1.060
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 3.641
   RMS: 0.932
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.215
   RMS: 0.945
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 1.318
   RMS: 0.971
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.961
   RMS: 0.922
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 3.329
   RMS: 0.943
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.508
   RMS: 0.618
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.809
   RMS: 0.450
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.968
   RMS: 0.821
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.259
   RMS: 0.837
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.537
   RMS: 0.543
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.681
   RMS: 0.416
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.904
   RMS: 0.972
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.875
   RMS: 0.935
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.930
   RMS: 0.909
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.475
   RMS: 0.606
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.718
   RMS: 0.947
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.374
   RMS: 0.904
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.636
   RMS: 0.416
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.892
   RMS: 0.467
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.979
   RMS: 0.562
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.872
   RMS: 0.565
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 4.150
   RMS: 0.905
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.032
   RMS: 1.032
   RMS: 1.287
   RMS: 1.032
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.533
   RMS: 0.425
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.155
   RMS: 1.155
   RMS: 2.023
   RMS: 1.155
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 0.536
   RMS: 0.979
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.784
   RMS: 0.892
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.326
   RMS: 0.987
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.759
   RMS: 0.792
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.760
   RMS: 0.795
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 1.519
   RMS: 0.983
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.529
   RMS: 0.398
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.466
   RMS: 0.445
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 1.350
   RMS: 0.421
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 0.848
   RMS: 0.918
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.509
   RMS: 0.782
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.514
   RMS: 0.811
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.677
   RMS: 0.780
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.127
   RMS: 0.924
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.697
   RMS: 0.885
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.589
   RMS: 0.592
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 1.084
   RMS: 0.520
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.794
   RMS: 0.755
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 1.796
   RMS: 1.047
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 3.764
   RMS: 1.033
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 1.715
   RMS: 0.958
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.918
   RMS: 0.910
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 3.750
   RMS: 0.600
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.872
   RMS: 0.877
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 0.457
   RMS: 0.340
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.676
   RMS: 0.883
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.591
   RMS: 0.537
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 4.222
   RMS: 0.954
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 4.039
   RMS: 0.967
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 1.190
   RMS: 0.936
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.191
   RMS: 0.870
   Unrecognised keyword: pdb1adq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.502
   RMS: 0.506
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.583
   RMS: 0.413
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.093
   RMS: 0.408
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.719
   RMS: 0.950
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.473
   RMS: 0.363
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.849
   RMS: 0.783
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.689
   RMS: 0.480
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.208
   RMS: 0.818
   Unrecognised keyword: pdb1adq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 1.472
   RMS: 0.950
   Unrecognised keyword: pdb1adq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 3.059
   RMS: 0.931
   Unrecognised keyword: pdb1adq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 4.043
   RMS: 0.785
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fgn_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.454
   RMS: 0.466
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 2.770
   RMS: 1.112
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.890
   RMS: 0.553
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.670
   RMS: 0.910
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.064
   RMS: 1.064
   RMS: 0.896
   RMS: 1.064
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 2.341
   RMS: 0.522
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.714
   RMS: 0.789
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.881
   RMS: 0.439
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.449
   RMS: 0.807
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.427
   RMS: 0.922
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.895
   RMS: 0.690
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 1.274
   RMS: 0.985
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.202
   RMS: 0.997
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 3.156
   RMS: 0.797
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.925
   RMS: 0.695
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.198
   RMS: 0.902
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 1.364
   RMS: 1.059
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.297
   RMS: 1.035
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.040
   RMS: 0.661
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.491
   RMS: 0.932
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 0.548
   RMS: 0.608
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.035
   RMS: 0.682
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.779
   RMS: 0.760
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.632
   RMS: 0.886
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.170
   RMS: 1.170
   RMS: 1.593
   RMS: 1.170
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.277
   RMS: 0.851
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 2.993
   RMS: 0.848
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 0.884
   RMS: 0.926
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.131
   RMS: 1.131
   RMS: 2.479
   RMS: 1.131
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.480
   RMS: 0.443
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 4.127
   RMS: 0.417
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.228
   RMS: 0.498
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.584
   RMS: 0.473
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 1.794
   RMS: 0.995
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.040
   RMS: 0.692
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.683
   RMS: 0.882
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.889
   RMS: 0.758
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 1.254
   RMS: 0.519
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 0.799
   RMS: 0.968
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.029
   RMS: 0.788
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.212
   RMS: 0.803
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.761
   RMS: 0.480
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 1.146
   RMS: 0.485
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 0.460
   RMS: 0.953
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.958
   RMS: 0.945
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.753
   RMS: 0.762
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.911
   RMS: 5.911
   RMS: 16.949
   RMS: 5.911
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.336
   RMS: 0.898
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.474
   RMS: 0.585
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 1.346
   RMS: 1.048
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 1.025
   RMS: 0.495
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.711
   RMS: 0.967
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 0.860
   RMS: 0.990
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 1.052
   RMS: 0.672
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.075
   RMS: 0.682
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.058
   RMS: 0.783
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.332
   RMS: 0.943
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 2.129
   RMS: 1.039
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.944
   RMS: 0.736
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.399
   RMS: 0.716
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 3.673
   RMS: 0.632
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.044
   RMS: 1.044
   RMS: 1.171
   RMS: 1.044
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.179
   RMS: 0.536
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.143
   RMS: 0.900
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.930
   RMS: 0.640
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.494
   RMS: 0.714
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.801
   RMS: 0.791
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.138
   RMS: 0.935
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 1.695
   RMS: 1.113
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.851
   RMS: 0.639
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 0.833
   RMS: 0.964
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 1.350
   RMS: 0.928
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.828
   RMS: 0.997
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.093
   RMS: 0.696
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.396
   RMS: 0.683
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.793
   RMS: 0.422
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.392
   RMS: 0.482
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.204
   RMS: 1.204
   RMS: 0.819
   RMS: 1.204
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.441
   RMS: 0.494
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.888
   RMS: 0.597
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.345
   RMS: 0.846
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.793
   RMS: 0.804
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.311
   RMS: 0.493
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.076
   RMS: 0.600
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.528
   RMS: 0.753
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 2.564
   RMS: 0.897
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 1.607
   RMS: 0.992
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.550
   RMS: 0.897
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 3.165
   RMS: 0.508
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.141
   RMS: 2.141
   RMS: 13.604
   RMS: 2.141
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 1.174
   RMS: 0.899
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.494
   RMS: 0.961
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 1.233
   RMS: 0.465
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 2.096
   RMS: 0.993
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 1.668
   RMS: 1.146
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 1.138
   RMS: 1.046
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.531
   RMS: 0.916
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.067
   RMS: 0.960
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.640
   RMS: 1.640
   RMS: 1.737
   RMS: 1.640
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 2.983
   RMS: 0.378
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.560
   RMS: 0.586
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.508
   RMS: 1.004
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 3.124
   RMS: 0.389
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 2.806
   RMS: 0.581
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.577
   RMS: 0.371
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.711
   RMS: 0.901
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.854
   RMS: 0.691
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 2.698
   RMS: 0.785
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.685
   RMS: 0.900
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.094
   RMS: 0.889
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.838
   RMS: 0.513
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.999
   RMS: 0.675
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.222
   RMS: 1.222
   RMS: 0.977
   RMS: 1.222
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 1.145
   RMS: 0.953
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.917
   RMS: 0.798
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.085
   RMS: 0.833
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.556
   RMS: 0.833
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 1.634
   RMS: 0.714
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.302
   RMS: 0.483
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.595
   RMS: 0.521
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 0.851
   RMS: 0.988
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 0.669
   RMS: 0.940
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.440
   RMS: 0.808
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.859
   RMS: 0.770
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 3.350
   RMS: 0.439
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.730
   RMS: 0.404
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 1.254
   RMS: 1.010
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 1.653
   RMS: 1.026
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.953
   RMS: 0.730
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.706
   RMS: 0.487
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 0.822
   RMS: 0.390
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.973
   RMS: 0.674
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.225
   RMS: 0.711
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.895
   RMS: 0.721
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.392
   RMS: 0.901
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.276
   RMS: 0.941
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 2.356
   RMS: 1.000
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.611
   RMS: 0.500
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.201
   RMS: 0.915
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 2.973
   RMS: 0.725
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.790
   RMS: 0.806
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 1.415
   RMS: 0.496
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.031
   RMS: 0.665
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.238
   RMS: 0.863
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 0.662
   RMS: 0.978
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.789
   RMS: 0.696
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.857
   RMS: 0.720
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 3.032
   RMS: 0.551
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.651
   RMS: 0.638
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.574
   RMS: 0.453
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.217
   RMS: 0.753
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.808
   RMS: 0.694
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.468
   RMS: 0.941
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.851
   RMS: 0.652
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.102
   RMS: 0.817
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 3.266
   RMS: 0.515
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.096
   RMS: 0.464
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.692
   RMS: 0.542
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.194
   RMS: 0.886
   Unrecognised keyword: pdb1afv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.094
   RMS: 0.869
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 1.139
   RMS: 0.995
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 0.721
   RMS: 0.984
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.825
   RMS: 0.815
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 1.285
   RMS: 1.031
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.298
   RMS: 0.922
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 0.742
   RMS: 0.963
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.822
   RMS: 0.504
   Unrecognised keyword: pdb1afv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.147
   RMS: 0.529
   Unrecognised keyword: pdb1afv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 2.592
   RMS: 0.949
   Unrecognised keyword: pdb1afv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 3.123
   RMS: 0.922
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1aif_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 2.938
   RMS: 0.966
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.822
   RMS: 0.506
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.866
   RMS: 0.748
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.080
   RMS: 0.905
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 2.445
   RMS: 0.494
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.034
   RMS: 0.712
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.864
   RMS: 0.476
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.656
   RMS: 0.758
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.664
   RMS: 0.776
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.975
   RMS: 0.549
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.531
   RMS: 0.867
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.438
   RMS: 0.859
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.156
   RMS: 0.776
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.019
   RMS: 0.673
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.324
   RMS: 0.796
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.572
   RMS: 0.935
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.582
   RMS: 0.911
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 1.089
   RMS: 0.599
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.696
   RMS: 0.809
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.541
   RMS: 0.584
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.125
   RMS: 0.558
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.544
   RMS: 0.627
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.816
   RMS: 0.761
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 1.590
   RMS: 1.025
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.374
   RMS: 0.727
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.027
   RMS: 0.764
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.963
   RMS: 0.748
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.132
   RMS: 1.132
   RMS: 2.698
   RMS: 1.132
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.659
   RMS: 0.466
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 4.020
   RMS: 0.491
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 1.438
   RMS: 0.533
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.534
   RMS: 0.504
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 2.049
   RMS: 0.883
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.039
   RMS: 0.662
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.866
   RMS: 0.749
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.053
   RMS: 0.698
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 1.419
   RMS: 0.508
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.986
   RMS: 0.855
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.279
   RMS: 0.709
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.204
   RMS: 0.718
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.911
   RMS: 0.465
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.212
   RMS: 0.604
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.769
   RMS: 0.863
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.943
   RMS: 0.910
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.858
   RMS: 0.651
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.858
   RMS: 5.858
   RMS: 16.757
   RMS: 5.858
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.589
   RMS: 0.784
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.384
   RMS: 0.488
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.550
   RMS: 0.911
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.107
   RMS: 0.558
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.694
   RMS: 0.820
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.944
   RMS: 0.837
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.219
   RMS: 0.579
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.225
   RMS: 0.588
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.407
   RMS: 0.697
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.651
   RMS: 0.874
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 2.166
   RMS: 0.903
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 1.181
   RMS: 0.642
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.623
   RMS: 0.663
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.555
   RMS: 0.578
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.302
   RMS: 0.925
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.454
   RMS: 0.518
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.389
   RMS: 0.776
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 1.026
   RMS: 0.634
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.316
   RMS: 0.589
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.099
   RMS: 0.674
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.428
   RMS: 0.816
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.979
   RMS: 0.998
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.910
   RMS: 0.605
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.077
   RMS: 0.831
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.600
   RMS: 0.832
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 2.040
   RMS: 0.882
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 3.088
   RMS: 0.639
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.503
   RMS: 0.673
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.969
   RMS: 0.429
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.441
   RMS: 0.465
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.055
   RMS: 1.055
   RMS: 0.799
   RMS: 1.055
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.521
   RMS: 0.536
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.964
   RMS: 0.570
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.383
   RMS: 0.639
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.953
   RMS: 0.715
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.344
   RMS: 0.520
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.299
   RMS: 0.605
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.541
   RMS: 0.643
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 2.696
   RMS: 0.857
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.874
   RMS: 0.921
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.835
   RMS: 0.763
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 3.091
   RMS: 0.423
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.056
   RMS: 2.056
   RMS: 13.270
   RMS: 2.056
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.407
   RMS: 0.794
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.507
   RMS: 0.829
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 1.319
   RMS: 0.451
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 2.348
   RMS: 0.890
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.853
   RMS: 0.990
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.294
   RMS: 0.926
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.773
   RMS: 0.833
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.296
   RMS: 0.830
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.643
   RMS: 1.643
   RMS: 1.724
   RMS: 1.643
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 3.063
   RMS: 0.419
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.323
   RMS: 0.537
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.726
   RMS: 0.885
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 3.078
   RMS: 0.427
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 2.744
   RMS: 0.542
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.592
   RMS: 0.429
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.673
   RMS: 0.773
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.915
   RMS: 0.699
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 2.720
   RMS: 0.726
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.618
   RMS: 0.819
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.389
   RMS: 0.757
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.682
   RMS: 0.491
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.900
   RMS: 0.635
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 1.165
   RMS: 1.042
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.428
   RMS: 0.843
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.101
   RMS: 0.759
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 1.306
   RMS: 0.772
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.764
   RMS: 0.751
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.895
   RMS: 0.620
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 1.457
   RMS: 0.489
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.471
   RMS: 0.479
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.098
   RMS: 0.863
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.734
   RMS: 0.786
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.681
   RMS: 0.650
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.147
   RMS: 0.661
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 3.307
   RMS: 0.405
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.681
   RMS: 0.454
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.513
   RMS: 0.904
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.534
   RMS: 1.005
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.170
   RMS: 0.711
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.909
   RMS: 0.465
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.888
   RMS: 0.389
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.129
   RMS: 0.598
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.242
   RMS: 0.638
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.593
   RMS: 0.632
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.552
   RMS: 0.784
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.524
   RMS: 0.818
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 2.456
   RMS: 0.896
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.786
   RMS: 0.512
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.323
   RMS: 0.751
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 3.048
   RMS: 0.630
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 1.088
   RMS: 0.699
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.594
   RMS: 0.414
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.153
   RMS: 0.564
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.477
   RMS: 0.768
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 0.731
   RMS: 0.858
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 1.085
   RMS: 0.583
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.776
   RMS: 0.638
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 3.009
   RMS: 0.582
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.393
   RMS: 0.594
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.764
   RMS: 0.479
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.265
   RMS: 0.635
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.972
   RMS: 0.613
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.707
   RMS: 0.809
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.969
   RMS: 0.582
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 1.400
   RMS: 0.680
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 3.200
   RMS: 0.473
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 3.051
   RMS: 0.479
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.716
   RMS: 0.564
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.276
   RMS: 0.739
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.318
   RMS: 0.747
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.320
   RMS: 0.872
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.829
   RMS: 0.877
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.078
   RMS: 0.718
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.497
   RMS: 0.900
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.593
   RMS: 0.888
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.010
   RMS: 0.870
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.785
   RMS: 0.471
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 1.395
   RMS: 0.545
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 2.774
   RMS: 0.825
   Unrecognised keyword: pdb1fgn_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 3.111
   RMS: 0.755
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ap2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 3.051
   RMS: 0.881
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 3.048
   RMS: 0.593
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 3.243
   RMS: 0.568
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.038
   RMS: 0.944
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 2.959
   RMS: 1.050
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 3.166
   RMS: 0.975
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.055
   RMS: 1.055
   RMS: 3.588
   RMS: 1.055
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.410
   RMS: 0.728
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.288
   RMS: 0.809
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.395
   RMS: 0.629
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.343
   RMS: 0.569
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.083
   RMS: 1.083
   RMS: 1.448
   RMS: 1.083
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 3.159
   RMS: 1.015
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 3.447
   RMS: 0.967
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.520
   RMS: 0.738
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 3.178
   RMS: 0.560
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.234
   RMS: 0.984
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 3.607
   RMS: 0.641
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 2.860
   RMS: 0.953
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 3.376
   RMS: 0.823
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.079
   RMS: 0.941
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 3.084
   RMS: 0.597
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.748
   RMS: 0.730
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.443
   RMS: 0.890
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.454
   RMS: 1.035
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.235
   RMS: 0.625
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.080
   RMS: 1.080
   RMS: 4.195
   RMS: 1.080
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 2.908
   RMS: 0.989
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.084
   RMS: 1.084
   RMS: 3.514
   RMS: 1.084
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 3.409
   RMS: 0.980
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 3.026
   RMS: 1.011
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 3.669
   RMS: 0.603
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.536
   RMS: 0.964
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.030
   RMS: 0.844
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 3.211
   RMS: 1.059
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.456
   RMS: 0.969
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 2.969
   RMS: 0.663
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 3.045
   RMS: 1.036
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 1.776
   RMS: 1.041
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.203
   RMS: 0.969
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.202
   RMS: 1.202
   RMS: 3.277
   RMS: 1.202
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 2.830
   RMS: 0.670
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.282
   RMS: 1.282
   RMS: 3.754
   RMS: 1.282
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 3.133
   RMS: 0.693
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.895
   RMS: 5.895
   RMS: 17.883
   RMS: 5.895
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.407
   RMS: 0.885
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 2.993
   RMS: 0.956
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 3.424
   RMS: 0.621
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.172
   RMS: 1.172
   RMS: 3.404
   RMS: 1.172
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 3.169
   RMS: 0.594
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 3.270
   RMS: 0.604
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 3.241
   RMS: 0.857
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.271
   RMS: 0.847
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.016
   RMS: 0.984
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 3.222
   RMS: 0.683
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 4.141
   RMS: 0.613
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.101
   RMS: 0.903
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.535
   RMS: 0.933
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 2.576
   RMS: 0.981
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 3.436
   RMS: 0.587
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.124
   RMS: 0.966
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 3.287
   RMS: 0.632
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.224
   RMS: 0.965
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 3.071
   RMS: 0.967
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 2.836
   RMS: 0.845
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 3.198
   RMS: 0.686
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.464
   RMS: 0.678
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 3.246
   RMS: 0.961
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 3.167
   RMS: 0.638
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 3.423
   RMS: 0.640
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.837
   RMS: 0.612
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.001
   RMS: 1.001
   RMS: 1.757
   RMS: 1.001
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 3.615
   RMS: 0.921
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 3.127
   RMS: 1.018
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 3.015
   RMS: 0.979
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.148
   RMS: 0.706
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 3.056
   RMS: 0.960
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 3.339
   RMS: 0.939
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 2.939
   RMS: 0.889
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 3.207
   RMS: 0.985
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 2.928
   RMS: 0.968
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.221
   RMS: 0.896
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 2.940
   RMS: 0.798
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.061
   RMS: 1.061
   RMS: 0.569
   RMS: 1.061
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.389
   RMS: 0.677
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 2.903
   RMS: 0.956
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 1.835
   RMS: 0.965
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.047
   RMS: 2.047
   RMS: 14.639
   RMS: 2.047
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.332
   RMS: 0.677
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.572
   RMS: 0.573
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.419
   RMS: 0.965
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 3.890
   RMS: 0.676
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 3.695
   RMS: 0.639
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.302
   RMS: 0.620
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 2.960
   RMS: 0.692
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 3.224
   RMS: 0.577
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.894
   RMS: 1.894
   RMS: 3.976
   RMS: 1.894
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 1.154
   RMS: 1.048
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.028
   RMS: 1.028
   RMS: 2.990
   RMS: 1.028
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.419
   RMS: 0.619
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.101
   RMS: 1.101
   RMS: 1.902
   RMS: 1.101
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 1.977
   RMS: 0.986
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 2.935
   RMS: 0.996
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.088
   RMS: 0.984
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 3.301
   RMS: 1.082
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.406
   RMS: 1.023
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.018
   RMS: 0.812
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 3.075
   RMS: 0.585
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 2.810
   RMS: 0.893
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 3.401
   RMS: 0.945
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.202
   RMS: 0.734
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.211
   RMS: 0.583
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.091
   RMS: 1.091
   RMS: 3.210
   RMS: 1.091
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.029
   RMS: 1.029
   RMS: 3.315
   RMS: 1.029
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 3.614
   RMS: 1.005
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.539
   RMS: 0.752
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 3.330
   RMS: 1.006
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 3.039
   RMS: 0.938
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 3.092
   RMS: 0.609
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 3.089
   RMS: 0.618
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 2.904
   RMS: 0.738
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.074
   RMS: 0.694
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 2.072
   RMS: 0.944
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 3.085
   RMS: 1.099
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.283
   RMS: 0.617
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.265
   RMS: 1.265
   RMS: 3.710
   RMS: 1.265
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 3.229
   RMS: 0.996
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 3.123
   RMS: 0.939
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 3.116
   RMS: 1.035
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.310
   RMS: 0.902
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.451
   RMS: 0.841
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 3.274
   RMS: 1.003
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 3.587
   RMS: 0.621
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.305
   RMS: 0.620
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 4.178
   RMS: 0.598
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.982
   RMS: 0.982
   RMS: 3.062
   RMS: 0.982
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 3.468
   RMS: 0.876
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.517
   RMS: 0.852
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 3.044
   RMS: 0.877
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 3.310
   RMS: 0.970
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 3.277
   RMS: 0.954
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 3.286
   RMS: 0.713
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.071
   RMS: 0.615
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 2.969
   RMS: 0.827
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 2.840
   RMS: 1.113
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 1.832
   RMS: 1.054
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.044
   RMS: 1.044
   RMS: 2.961
   RMS: 1.044
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 3.089
   RMS: 0.986
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.940
   RMS: 0.708
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 3.211
   RMS: 0.944
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 3.432
   RMS: 0.561
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 3.288
   RMS: 0.972
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.162
   RMS: 0.681
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.850
   RMS: 1.005
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 1.684
   RMS: 1.040
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.064
   RMS: 0.969
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 3.442
   RMS: 0.925
   Unrecognised keyword: pdb1aif_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 3.283
   RMS: 0.574
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 3.360
   RMS: 0.536
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 3.206
   RMS: 0.570
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 3.138
   RMS: 1.026
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 3.404
   RMS: 0.592
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 3.339
   RMS: 0.942
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 3.038
   RMS: 0.606
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 3.338
   RMS: 0.897
   Unrecognised keyword: pdb1aif_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 2.618
   RMS: 0.988
   Unrecognised keyword: pdb1aif_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 0.866
   RMS: 1.013
   Unrecognised keyword: pdb1aif_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.519
   RMS: 0.922
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1aqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.666
   RMS: 0.712
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.867
   RMS: 0.849
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 2.443
   RMS: 0.441
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.851
   RMS: 0.809
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 0.373
   RMS: 0.385
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.492
   RMS: 0.807
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.556
   RMS: 0.777
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.712
   RMS: 0.537
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.554
   RMS: 0.813
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.401
   RMS: 0.796
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.287
   RMS: 0.812
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 1.215
   RMS: 0.630
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.078
   RMS: 0.849
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.377
   RMS: 0.894
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.692
   RMS: 0.855
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.608
   RMS: 0.534
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.486
   RMS: 0.745
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.808
   RMS: 0.545
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.813
   RMS: 0.537
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 0.492
   RMS: 0.590
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 1.006
   RMS: 0.702
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.121
   RMS: 0.964
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.847
   RMS: 0.715
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.060
   RMS: 0.825
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.687
   RMS: 0.738
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 2.470
   RMS: 1.025
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.592
   RMS: 0.427
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 3.996
   RMS: 0.492
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 1.400
   RMS: 0.453
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.373
   RMS: 0.483
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.677
   RMS: 0.826
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.115
   RMS: 0.614
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.738
   RMS: 0.827
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.835
   RMS: 0.742
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 1.090
   RMS: 0.449
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.651
   RMS: 0.815
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.095
   RMS: 0.783
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 3.402
   RMS: 0.808
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 0.818
   RMS: 0.499
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.947
   RMS: 0.668
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.794
   RMS: 0.744
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.309
   RMS: 0.875
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.909
   RMS: 0.600
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.882
   RMS: 5.882
   RMS: 16.594
   RMS: 5.882
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.538
   RMS: 0.814
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.687
   RMS: 0.461
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.122
   RMS: 0.840
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.788
   RMS: 0.593
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.481
   RMS: 0.728
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.659
   RMS: 0.764
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.187
   RMS: 0.579
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 1.157
   RMS: 0.594
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.392
   RMS: 0.803
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.430
   RMS: 0.807
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 2.009
   RMS: 0.838
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.480
   RMS: 0.762
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 1.529
   RMS: 0.603
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 3.733
   RMS: 0.547
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.188
   RMS: 0.812
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.182
   RMS: 0.473
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.227
   RMS: 0.747
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.892
   RMS: 0.527
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.727
   RMS: 0.607
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.133
   RMS: 0.739
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.530
   RMS: 0.777
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.740
   RMS: 0.908
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.743
   RMS: 0.563
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.096
   RMS: 0.758
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.423
   RMS: 0.775
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.857
   RMS: 0.792
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.313
   RMS: 0.666
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 1.103
   RMS: 0.535
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.723
   RMS: 0.500
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.664
   RMS: 0.450
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 0.738
   RMS: 0.919
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.674
   RMS: 0.459
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.756
   RMS: 0.552
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.727
   RMS: 0.723
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.778
   RMS: 0.830
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.917
   RMS: 0.473
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 1.446
   RMS: 0.441
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.901
   RMS: 0.658
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 2.734
   RMS: 0.883
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.916
   RMS: 0.811
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.061
   RMS: 0.807
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 3.249
   RMS: 0.475
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.048
   RMS: 2.048
   RMS: 13.371
   RMS: 2.048
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 1.206
   RMS: 0.714
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.406
   RMS: 0.755
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.783
   RMS: 0.403
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 2.199
   RMS: 0.841
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.779
   RMS: 0.933
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.323
   RMS: 0.850
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.725
   RMS: 0.741
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.250
   RMS: 0.777
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.637
   RMS: 1.637
   RMS: 1.440
   RMS: 1.637
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 3.197
   RMS: 0.531
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.717
   RMS: 0.518
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.859
   RMS: 0.786
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.138
   RMS: 0.510
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 2.881
   RMS: 0.498
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.745
   RMS: 0.375
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.460
   RMS: 0.833
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.022
   RMS: 0.598
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 2.737
   RMS: 0.767
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.679
   RMS: 0.728
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.495
   RMS: 0.744
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.815
   RMS: 0.392
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.961
   RMS: 0.575
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 1.186
   RMS: 1.002
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.247
   RMS: 0.755
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.766
   RMS: 0.801
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.989
   RMS: 0.817
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.377
   RMS: 0.790
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.895
   RMS: 0.635
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.396
   RMS: 0.462
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.485
   RMS: 0.425
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.165
   RMS: 0.787
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.065
   RMS: 0.787
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.105
   RMS: 0.659
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.949
   RMS: 0.653
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 3.597
   RMS: 0.405
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.595
   RMS: 0.561
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.417
   RMS: 0.820
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.035
   RMS: 0.927
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.102
   RMS: 0.697
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.852
   RMS: 0.436
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.414
   RMS: 0.487
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.896
   RMS: 0.564
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.363
   RMS: 0.576
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.976
   RMS: 0.650
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.373
   RMS: 0.728
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.467
   RMS: 0.734
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 2.253
   RMS: 0.801
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.844
   RMS: 0.448
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.179
   RMS: 0.827
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.137
   RMS: 0.726
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.122
   RMS: 0.795
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 1.078
   RMS: 0.464
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.999
   RMS: 0.595
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.382
   RMS: 0.719
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.583
   RMS: 0.768
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.202
   RMS: 0.618
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.503
   RMS: 0.620
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 3.115
   RMS: 0.501
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.680
   RMS: 0.550
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.762
   RMS: 0.439
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 3.459
   RMS: 0.667
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.751
   RMS: 0.596
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.650
   RMS: 0.781
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 1.027
   RMS: 0.560
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 1.341
   RMS: 0.695
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 3.391
   RMS: 0.503
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 3.159
   RMS: 0.507
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.432
   RMS: 0.492
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.811
   RMS: 0.772
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.202
   RMS: 0.678
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.138
   RMS: 0.780
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.767
   RMS: 0.782
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.953
   RMS: 0.797
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.481
   RMS: 0.825
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.385
   RMS: 0.869
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.055
   RMS: 0.800
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.683
   RMS: 0.367
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 1.730
   RMS: 0.492
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 2.747
   RMS: 0.904
   Unrecognised keyword: pdb1ap2_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 3.317
   RMS: 0.883
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mqk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 0.430
   RMS: 0.420
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 2.579
   RMS: 0.751
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.391
   RMS: 0.762
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.646
   RMS: 0.758
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.002
   RMS: 0.830
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 1.044
   RMS: 0.590
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.468
   RMS: 0.503
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.983
   RMS: 0.500
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.855
   RMS: 0.443
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.502
   RMS: 0.873
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.805
   RMS: 0.759
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.679
   RMS: 0.793
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.912
   RMS: 0.479
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 1.159
   RMS: 0.481
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.737
   RMS: 0.721
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 1.017
   RMS: 0.415
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.730
   RMS: 0.739
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.568
   RMS: 0.523
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.881
   RMS: 0.673
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.560
   RMS: 0.355
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 1.110
   RMS: 0.653
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.701
   RMS: 0.690
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.299
   RMS: 0.783
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 0.331
   RMS: 0.326
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 2.011
   RMS: 0.862
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.361
   RMS: 0.793
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 4.396
   RMS: 0.870
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.875
   RMS: 0.804
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.523
   RMS: 0.830
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.284
   RMS: 0.473
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 3.341
   RMS: 0.767
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.267
   RMS: 0.636
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.419
   RMS: 0.841
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.753
   RMS: 0.762
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.304
   RMS: 0.451
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.654
   RMS: 0.773
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.565
   RMS: 0.771
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.461
   RMS: 0.738
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 0.798
   RMS: 1.024
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.534
   RMS: 0.443
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.619
   RMS: 1.057
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.522
   RMS: 0.433
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.934
   RMS: 5.934
   RMS: 16.777
   RMS: 5.934
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 1.008
   RMS: 0.703
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.659
   RMS: 0.762
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.762
   RMS: 0.476
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.658
   RMS: 0.974
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.511
   RMS: 0.419
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 0.419
   RMS: 0.338
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.740
   RMS: 0.652
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.732
   RMS: 0.645
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.833
   RMS: 0.742
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.911
   RMS: 0.494
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.763
   RMS: 0.445
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.981
   RMS: 0.642
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.046
   RMS: 0.729
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 4.057
   RMS: 0.714
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.762
   RMS: 0.532
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.738
   RMS: 0.777
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.715
   RMS: 0.414
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.633
   RMS: 0.784
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.698
   RMS: 0.711
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 0.670
   RMS: 0.608
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.961
   RMS: 0.451
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.247
   RMS: 0.606
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.544
   RMS: 0.797
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.603
   RMS: 0.489
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.908
   RMS: 0.482
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.369
   RMS: 0.395
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 3.428
   RMS: 0.789
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.846
   RMS: 0.685
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.361
   RMS: 0.810
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.474
   RMS: 0.715
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.583
   RMS: 0.679
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.419
   RMS: 0.761
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.424
   RMS: 0.719
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.563
   RMS: 0.720
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.253
   RMS: 0.740
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.779
   RMS: 0.788
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.960
   RMS: 0.722
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.692
   RMS: 0.492
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 2.815
   RMS: 0.843
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.375
   RMS: 0.531
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.570
   RMS: 0.770
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.532
   RMS: 0.758
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.963
   RMS: 1.963
   RMS: 13.714
   RMS: 1.963
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.701
   RMS: 0.404
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 1.217
   RMS: 0.348
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.775
   RMS: 0.764
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 1.704
   RMS: 0.543
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 1.293
   RMS: 0.554
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.840
   RMS: 0.491
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.464
   RMS: 0.406
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.714
   RMS: 0.396
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.800
   RMS: 1.800
   RMS: 1.347
   RMS: 1.800
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 3.293
   RMS: 0.867
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.877
   RMS: 0.735
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 1.351
   RMS: 0.516
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.449
   RMS: 0.886
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.104
   RMS: 0.791
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.588
   RMS: 0.812
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.535
   RMS: 0.869
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.686
   RMS: 0.819
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 2.906
   RMS: 0.794
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.694
   RMS: 0.538
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 0.903
   RMS: 0.359
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.109
   RMS: 0.696
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.859
   RMS: 0.718
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.695
   RMS: 0.613
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.702
   RMS: 0.453
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.432
   RMS: 0.849
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.610
   RMS: 0.800
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.004
   RMS: 0.747
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 1.361
   RMS: 0.580
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.961
   RMS: 0.804
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.592
   RMS: 0.757
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.625
   RMS: 0.407
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.723
   RMS: 0.469
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.713
   RMS: 0.441
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.427
   RMS: 0.426
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.733
   RMS: 0.772
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.613
   RMS: 0.896
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.862
   RMS: 0.462
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 1.434
   RMS: 1.021
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.635
   RMS: 0.810
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.298
   RMS: 0.727
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.478
   RMS: 0.827
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.503
   RMS: 0.665
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.064
   RMS: 0.658
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.092
   RMS: 0.810
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 0.920
   RMS: 0.359
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.933
   RMS: 0.473
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 1.948
   RMS: 0.463
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.406
   RMS: 0.782
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.781
   RMS: 0.670
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 3.195
   RMS: 0.631
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.553
   RMS: 0.632
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.840
   RMS: 0.780
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.643
   RMS: 0.744
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.796
   RMS: 0.447
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.435
   RMS: 0.464
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.681
   RMS: 0.619
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.398
   RMS: 0.878
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 3.314
   RMS: 0.871
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.900
   RMS: 0.784
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.363
   RMS: 0.766
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 3.492
   RMS: 0.486
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.362
   RMS: 0.697
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 1.122
   RMS: 0.381
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.644
   RMS: 0.755
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.767
   RMS: 0.493
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.649
   RMS: 0.783
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.437
   RMS: 0.814
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.420
   RMS: 0.802
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.715
   RMS: 0.739
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.666
   RMS: 0.411
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.632
   RMS: 0.410
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.490
   RMS: 0.463
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.393
   RMS: 0.791
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 0.913
   RMS: 0.379
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.853
   RMS: 0.718
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.494
   RMS: 0.469
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.644
   RMS: 0.691
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.401
   RMS: 0.809
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 2.750
   RMS: 0.766
   Unrecognised keyword: pdb1aqk_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 3.506
   RMS: 0.698
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1d5i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 2.734
   RMS: 0.901
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.493
   RMS: 0.929
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.709
   RMS: 0.892
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.842
   RMS: 0.983
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.038
   RMS: 0.504
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.381
   RMS: 0.693
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.902
   RMS: 0.422
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.823
   RMS: 0.318
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 3.699
   RMS: 1.005
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.045
   RMS: 0.921
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.631
   RMS: 0.871
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.699
   RMS: 0.508
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 1.208
   RMS: 0.349
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.665
   RMS: 0.867
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.317
   RMS: 0.317
   RMS: 0.849
   RMS: 0.317
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.075
   RMS: 0.846
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.421
   RMS: 0.700
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.004
   RMS: 0.847
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.761
   RMS: 0.363
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.889
   RMS: 0.463
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.586
   RMS: 0.768
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.450
   RMS: 0.933
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.433
   RMS: 0.443
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.840
   RMS: 0.897
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.692
   RMS: 0.929
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.027
   RMS: 1.027
   RMS: 4.443
   RMS: 1.027
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 0.824
   RMS: 0.923
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.736
   RMS: 0.955
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 1.065
   RMS: 0.319
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 3.519
   RMS: 0.850
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.534
   RMS: 0.760
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.982
   RMS: 0.982
   RMS: 0.453
   RMS: 0.982
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.546
   RMS: 0.871
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 0.569
   RMS: 0.342
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 0.868
   RMS: 0.933
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.818
   RMS: 0.933
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.450
   RMS: 0.894
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.210
   RMS: 1.210
   RMS: 0.807
   RMS: 1.210
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.676
   RMS: 0.476
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.177
   RMS: 1.177
   RMS: 1.472
   RMS: 1.177
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 0.753
   RMS: 0.529
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.916
   RMS: 5.916
   RMS: 16.553
   RMS: 5.916
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.978
   RMS: 0.811
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.843
   RMS: 0.912
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.660
   RMS: 0.329
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.151
   RMS: 1.151
   RMS: 0.383
   RMS: 1.151
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.582
   RMS: 0.410
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.391
   RMS: 0.374
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.898
   RMS: 0.763
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.878
   RMS: 0.753
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.989
   RMS: 0.862
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.865
   RMS: 0.454
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.267
   RMS: 0.267
   RMS: 1.643
   RMS: 0.267
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.111
   RMS: 0.776
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.874
   RMS: 0.825
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 4.258
   RMS: 0.896
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.697
   RMS: 0.376
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.832
   RMS: 0.897
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 0.612
   RMS: 0.386
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.678
   RMS: 0.874
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.886
   RMS: 0.851
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.942
   RMS: 0.749
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.970
   RMS: 0.410
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 1.177
   RMS: 0.437
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.493
   RMS: 0.906
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 0.426
   RMS: 0.377
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.812
   RMS: 0.432
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 1.183
   RMS: 0.338
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 3.710
   RMS: 0.947
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.648
   RMS: 0.815
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 0.410
   RMS: 0.944
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 0.656
   RMS: 0.884
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.835
   RMS: 0.577
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.596
   RMS: 0.900
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.364
   RMS: 0.859
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.780
   RMS: 0.783
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.357
   RMS: 0.896
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 0.923
   RMS: 0.936
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.979
   RMS: 0.815
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 1.007
   RMS: 0.652
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 3.011
   RMS: 1.015
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 1.382
   RMS: 0.413
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.844
   RMS: 0.901
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.722
   RMS: 0.886
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.926
   RMS: 1.926
   RMS: 13.591
   RMS: 1.926
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.566
   RMS: 0.456
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.306
   RMS: 0.306
   RMS: 1.204
   RMS: 0.306
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.584
   RMS: 0.891
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.561
   RMS: 0.417
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 1.231
   RMS: 0.338
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 0.960
   RMS: 0.325
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.511
   RMS: 0.493
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.786
   RMS: 0.330
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.796
   RMS: 1.796
   RMS: 1.000
   RMS: 1.796
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 3.508
   RMS: 1.017
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.014
   RMS: 0.912
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 1.325
   RMS: 0.394
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.067
   RMS: 1.067
   RMS: 3.588
   RMS: 1.067
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.332
   RMS: 0.896
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 0.947
   RMS: 0.970
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 0.664
   RMS: 0.962
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 0.677
   RMS: 0.961
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 3.099
   RMS: 0.918
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.861
   RMS: 0.589
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.071
   RMS: 0.430
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.282
   RMS: 0.823
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.857
   RMS: 0.837
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.800
   RMS: 0.467
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.327
   RMS: 0.327
   RMS: 0.693
   RMS: 0.327
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.417
   RMS: 0.965
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.417
   RMS: 0.924
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.829
   RMS: 0.900
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.282
   RMS: 0.596
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.055
   RMS: 0.970
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.795
   RMS: 0.893
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.752
   RMS: 0.356
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.928
   RMS: 0.426
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.894
   RMS: 0.510
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.466
   RMS: 0.521
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 4.005
   RMS: 0.916
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 0.766
   RMS: 1.033
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 0.888
   RMS: 0.310
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.160
   RMS: 1.160
   RMS: 1.299
   RMS: 1.160
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 0.644
   RMS: 0.961
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.466
   RMS: 0.883
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 0.547
   RMS: 0.990
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.413
   RMS: 0.773
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.168
   RMS: 0.764
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.188
   RMS: 0.984
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 0.788
   RMS: 0.333
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.971
   RMS: 0.353
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 1.863
   RMS: 0.333
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.636
   RMS: 0.909
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.749
   RMS: 0.759
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.393
   RMS: 0.803
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.714
   RMS: 0.796
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 0.855
   RMS: 0.919
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.790
   RMS: 0.856
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.801
   RMS: 0.545
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.605
   RMS: 0.444
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.917
   RMS: 0.697
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.626
   RMS: 1.035
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 3.494
   RMS: 1.047
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.102
   RMS: 0.964
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.465
   RMS: 0.915
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.732
   RMS: 0.578
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.308
   RMS: 0.839
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 1.129
   RMS: 0.323
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.544
   RMS: 0.843
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.833
   RMS: 0.512
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 3.850
   RMS: 0.936
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 3.618
   RMS: 0.960
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 0.658
   RMS: 0.945
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.514
   RMS: 0.828
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.694
   RMS: 0.461
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.300
   RMS: 0.300
   RMS: 0.607
   RMS: 0.300
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.321
   RMS: 0.321
   RMS: 0.498
   RMS: 0.321
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 0.487
   RMS: 0.937
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.928
   RMS: 0.324
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.716
   RMS: 0.809
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.671
   RMS: 0.425
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.564
   RMS: 0.846
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.625
   RMS: 0.952
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 2.937
   RMS: 0.884
   Unrecognised keyword: pdb1mqk_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 3.730
   RMS: 0.793
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ay1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 2.513
   RMS: 0.745
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 2.540
   RMS: 0.318
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.201
   RMS: 0.730
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.081
   RMS: 0.776
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 2.726
   RMS: 0.519
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.060
   RMS: 0.847
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 2.988
   RMS: 0.838
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.465
   RMS: 0.752
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 2.812
   RMS: 0.629
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.004
   RMS: 0.824
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 3.076
   RMS: 0.909
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 2.925
   RMS: 0.892
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 2.566
   RMS: 0.539
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.199
   RMS: 0.795
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 2.445
   RMS: 0.401
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 2.820
   RMS: 0.522
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 2.433
   RMS: 0.631
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 2.702
   RMS: 0.752
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 3.128
   RMS: 1.024
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 2.893
   RMS: 0.710
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.154
   RMS: 0.786
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 2.743
   RMS: 0.785
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.076
   RMS: 1.076
   RMS: 3.913
   RMS: 1.076
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.297
   RMS: 0.297
   RMS: 2.461
   RMS: 0.297
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 2.995
   RMS: 0.409
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 3.042
   RMS: 0.301
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 2.481
   RMS: 0.386
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 3.227
   RMS: 0.867
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.503
   RMS: 0.468
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 2.558
   RMS: 0.815
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 2.705
   RMS: 0.709
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 2.939
   RMS: 0.337
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 2.484
   RMS: 0.874
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 2.697
   RMS: 0.739
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 2.077
   RMS: 0.741
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 2.699
   RMS: 0.391
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 2.665
   RMS: 0.605
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 2.341
   RMS: 0.769
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 2.995
   RMS: 0.763
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 2.721
   RMS: 0.610
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.860
   RMS: 5.860
   RMS: 17.275
   RMS: 5.860
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.071
   RMS: 0.743
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 2.472
   RMS: 0.398
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 2.953
   RMS: 0.873
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 2.823
   RMS: 0.536
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 2.597
   RMS: 0.766
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 2.728
   RMS: 0.808
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 2.868
   RMS: 0.501
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 2.877
   RMS: 0.510
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 2.762
   RMS: 0.711
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 2.889
   RMS: 0.820
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 3.607
   RMS: 0.877
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 2.848
   RMS: 0.693
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 3.125
   RMS: 0.474
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 2.484
   RMS: 0.543
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 2.979
   RMS: 0.879
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 2.730
   RMS: 0.301
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 2.871
   RMS: 0.744
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 2.732
   RMS: 0.432
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 2.554
   RMS: 0.651
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 2.537
   RMS: 0.722
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 2.898
   RMS: 0.818
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 3.157
   RMS: 0.985
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 2.716
   RMS: 0.471
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 2.711
   RMS: 0.808
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 3.058
   RMS: 0.835
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.455
   RMS: 0.843
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 2.124
   RMS: 0.595
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 3.077
   RMS: 0.448
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.347
   RMS: 0.347
   RMS: 2.633
   RMS: 0.347
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 2.517
   RMS: 0.332
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 2.662
   RMS: 1.019
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 2.565
   RMS: 0.483
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 2.816
   RMS: 0.388
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 2.469
   RMS: 0.677
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 2.734
   RMS: 0.774
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 2.463
   RMS: 0.359
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 2.864
   RMS: 0.426
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 2.568
   RMS: 0.683
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.687
   RMS: 0.863
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.158
   RMS: 0.838
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 2.585
   RMS: 0.811
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 1.661
   RMS: 0.353
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.068
   RMS: 2.068
   RMS: 13.904
   RMS: 2.068
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 2.924
   RMS: 0.714
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.009
   RMS: 0.790
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 2.821
   RMS: 0.296
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.593
   RMS: 0.842
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 3.359
   RMS: 0.976
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 2.967
   RMS: 0.896
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 2.450
   RMS: 0.762
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 2.889
   RMS: 0.826
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.647
   RMS: 1.647
   RMS: 3.346
   RMS: 1.647
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 1.523
   RMS: 0.438
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 2.429
   RMS: 0.501
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.144
   RMS: 0.821
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 1.475
   RMS: 0.415
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 1.955
   RMS: 0.377
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 2.514
   RMS: 0.405
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 2.525
   RMS: 0.751
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 2.781
   RMS: 0.640
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.363
   RMS: 0.688
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 2.499
   RMS: 0.818
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 2.875
   RMS: 0.778
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.297
   RMS: 0.297
   RMS: 2.167
   RMS: 0.297
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 2.801
   RMS: 0.594
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.088
   RMS: 1.088
   RMS: 2.835
   RMS: 1.088
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 2.857
   RMS: 0.799
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 2.686
   RMS: 0.769
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 2.808
   RMS: 0.763
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 3.138
   RMS: 0.785
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 3.241
   RMS: 0.684
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.322
   RMS: 0.322
   RMS: 2.979
   RMS: 0.322
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.263
   RMS: 0.263
   RMS: 2.467
   RMS: 0.263
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 2.697
   RMS: 0.839
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 2.705
   RMS: 0.834
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 2.546
   RMS: 0.645
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 2.662
   RMS: 0.627
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 2.401
   RMS: 0.433
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 2.547
   RMS: 0.473
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.952
   RMS: 0.855
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 2.906
   RMS: 0.962
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 2.826
   RMS: 0.563
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 2.684
   RMS: 0.312
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 2.548
   RMS: 0.397
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 2.815
   RMS: 0.457
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 3.068
   RMS: 0.531
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 2.704
   RMS: 0.560
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.169
   RMS: 0.758
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 2.997
   RMS: 0.800
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 3.738
   RMS: 0.850
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.251
   RMS: 0.251
   RMS: 2.639
   RMS: 0.251
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 3.015
   RMS: 0.757
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.841
   RMS: 0.673
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 2.704
   RMS: 0.748
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 2.820
   RMS: 0.497
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 2.849
   RMS: 0.478
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 2.937
   RMS: 0.743
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 2.533
   RMS: 0.809
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 2.683
   RMS: 0.532
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 2.538
   RMS: 0.669
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 1.850
   RMS: 0.553
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 2.371
   RMS: 0.524
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.289
   RMS: 0.289
   RMS: 2.600
   RMS: 0.289
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 2.391
   RMS: 0.725
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 2.704
   RMS: 0.488
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.141
   RMS: 0.834
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 2.800
   RMS: 0.449
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 2.835
   RMS: 0.671
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.287
   RMS: 0.287
   RMS: 1.813
   RMS: 0.287
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 1.490
   RMS: 0.318
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 2.537
   RMS: 0.430
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 2.860
   RMS: 0.664
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 2.909
   RMS: 0.707
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 2.949
   RMS: 0.835
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 2.715
   RMS: 0.844
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 2.725
   RMS: 0.752
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 3.084
   RMS: 0.893
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 2.968
   RMS: 0.891
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.676
   RMS: 0.855
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.287
   RMS: 0.287
   RMS: 2.759
   RMS: 0.287
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 2.496
   RMS: 0.430
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.053
   RMS: 0.834
   Unrecognised keyword: pdb1d5i_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.659
   RMS: 0.884
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1t3f_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.748
   RMS: 0.797
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.036
   RMS: 0.430
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.101
   RMS: 0.747
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.634
   RMS: 0.605
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.959
   RMS: 0.895
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.858
   RMS: 0.896
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 3.475
   RMS: 0.394
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.035
   RMS: 0.805
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.877
   RMS: 0.643
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.957
   RMS: 0.948
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 1.148
   RMS: 0.906
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.776
   RMS: 0.823
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.015
   RMS: 0.822
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.904
   RMS: 0.709
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.709
   RMS: 0.651
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.039
   RMS: 0.842
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.696
   RMS: 0.821
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 1.281
   RMS: 1.036
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.811
   RMS: 0.558
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 3.224
   RMS: 0.402
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.655
   RMS: 0.818
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 1.999
   RMS: 1.007
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.516
   RMS: 0.771
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 4.345
   RMS: 0.778
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.933
   RMS: 0.784
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.721
   RMS: 0.814
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.159
   RMS: 0.890
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.343
   RMS: 0.647
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.542
   RMS: 0.549
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.520
   RMS: 0.466
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.770
   RMS: 0.752
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.521
   RMS: 0.838
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 0.741
   RMS: 0.319
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.253
   RMS: 0.253
   RMS: 3.613
   RMS: 0.253
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.567
   RMS: 0.685
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.007
   RMS: 0.854
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.380
   RMS: 0.834
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.664
   RMS: 0.984
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.764
   RMS: 0.743
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.893
   RMS: 5.893
   RMS: 16.822
   RMS: 5.893
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.999
   RMS: 0.617
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.880
   RMS: 0.799
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.718
   RMS: 0.896
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.731
   RMS: 0.802
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.685
   RMS: 0.848
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.555
   RMS: 0.812
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.852
   RMS: 0.659
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.862
   RMS: 0.658
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.814
   RMS: 0.510
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.794
   RMS: 0.784
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.918
   RMS: 0.876
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 1.066
   RMS: 0.545
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.016
   RMS: 0.663
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 4.104
   RMS: 0.747
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 0.886
   RMS: 0.989
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.760
   RMS: 0.759
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.667
   RMS: 0.744
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.744
   RMS: 0.900
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.913
   RMS: 0.822
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.762
   RMS: 0.528
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.890
   RMS: 0.790
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 1.179
   RMS: 0.985
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.751
   RMS: 0.838
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.592
   RMS: 0.900
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.889
   RMS: 0.837
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.354
   RMS: 0.845
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.491
   RMS: 0.687
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.938
   RMS: 0.723
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.521
   RMS: 0.708
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.673
   RMS: 0.683
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.126
   RMS: 1.126
   RMS: 0.846
   RMS: 1.126
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.618
   RMS: 0.754
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.660
   RMS: 0.625
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.721
   RMS: 0.600
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.518
   RMS: 0.466
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.902
   RMS: 0.844
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.974
   RMS: 0.748
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.936
   RMS: 0.653
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 2.752
   RMS: 0.567
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.379
   RMS: 0.837
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.710
   RMS: 0.755
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 3.548
   RMS: 0.800
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.107
   RMS: 2.107
   RMS: 13.916
   RMS: 2.107
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.734
   RMS: 0.835
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.433
   RMS: 0.850
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.833
   RMS: 0.801
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.654
   RMS: 0.893
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 1.317
   RMS: 0.999
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 0.982
   RMS: 0.941
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.447
   RMS: 0.762
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.802
   RMS: 0.877
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.741
   RMS: 1.741
   RMS: 1.450
   RMS: 1.741
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 3.292
   RMS: 0.761
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.009
   RMS: 0.779
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.333
   RMS: 0.911
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.421
   RMS: 0.782
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.201
   RMS: 0.811
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.833
   RMS: 0.794
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.799
   RMS: 0.785
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.901
   RMS: 0.878
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 2.944
   RMS: 0.383
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.957
   RMS: 0.769
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.925
   RMS: 0.771
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.223
   RMS: 0.792
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.111
   RMS: 0.793
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 0.794
   RMS: 1.041
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.654
   RMS: 0.829
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.490
   RMS: 0.421
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 0.530
   RMS: 0.373
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.965
   RMS: 0.454
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.323
   RMS: 0.757
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.167
   RMS: 0.787
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.833
   RMS: 0.800
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.671
   RMS: 0.873
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.894
   RMS: 0.804
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.816
   RMS: 0.681
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.394
   RMS: 0.632
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.812
   RMS: 0.799
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.897
   RMS: 0.732
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.881
   RMS: 0.875
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 1.530
   RMS: 1.020
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.721
   RMS: 0.586
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.510
   RMS: 0.688
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.641
   RMS: 0.740
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.598
   RMS: 0.618
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 1.280
   RMS: 0.649
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.292
   RMS: 0.712
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.990
   RMS: 0.794
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.958
   RMS: 0.845
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 2.086
   RMS: 0.874
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.599
   RMS: 0.789
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.929
   RMS: 0.587
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 3.224
   RMS: 0.505
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.594
   RMS: 0.476
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.897
   RMS: 0.737
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.797
   RMS: 0.587
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.871
   RMS: 0.705
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.590
   RMS: 0.843
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.699
   RMS: 0.633
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.524
   RMS: 0.858
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 3.352
   RMS: 0.857
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.066
   RMS: 0.797
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.437
   RMS: 0.715
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.549
   RMS: 0.662
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.475
   RMS: 0.550
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.138
   RMS: 0.836
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.759
   RMS: 0.656
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.777
   RMS: 0.733
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.670
   RMS: 0.769
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.437
   RMS: 0.716
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.678
   RMS: 0.752
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.771
   RMS: 0.610
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.752
   RMS: 0.750
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.766
   RMS: 0.886
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.561
   RMS: 0.924
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.491
   RMS: 0.485
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.027
   RMS: 0.938
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.774
   RMS: 0.776
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.563
   RMS: 0.895
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.817
   RMS: 0.803
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.443
   RMS: 0.748
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 2.691
   RMS: 0.449
   Unrecognised keyword: pdb1ay1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.529
   RMS: 0.661
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ce1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.407
   RMS: 0.777
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.538
   RMS: 0.767
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.535
   RMS: 0.530
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.475
   RMS: 0.841
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.337
   RMS: 0.821
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.425
   RMS: 0.821
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.287
   RMS: 0.610
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.058
   RMS: 0.835
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.301
   RMS: 0.924
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.675
   RMS: 0.891
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.335
   RMS: 0.483
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.392
   RMS: 0.774
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.928
   RMS: 0.463
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.650
   RMS: 0.512
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.531
   RMS: 0.598
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.006
   RMS: 0.733
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 1.041
   RMS: 1.013
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.755
   RMS: 0.737
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.147
   RMS: 0.843
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.665
   RMS: 0.793
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 2.414
   RMS: 1.042
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.302
   RMS: 0.302
   RMS: 0.626
   RMS: 0.302
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 4.019
   RMS: 0.409
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 1.340
   RMS: 0.345
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.422
   RMS: 0.335
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.525
   RMS: 0.870
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 3.295
   RMS: 0.558
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.768
   RMS: 0.846
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.744
   RMS: 0.767
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.924
   RMS: 0.335
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.685
   RMS: 0.839
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.159
   RMS: 0.793
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 3.634
   RMS: 0.818
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.748
   RMS: 0.405
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.888
   RMS: 0.594
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.689
   RMS: 0.788
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.226
   RMS: 0.823
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.955
   RMS: 0.636
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.884
   RMS: 5.884
   RMS: 16.620
   RMS: 5.884
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.477
   RMS: 0.812
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.734
   RMS: 0.423
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.008
   RMS: 0.862
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.624
   RMS: 0.533
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.289
   RMS: 0.778
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.522
   RMS: 0.807
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 1.195
   RMS: 0.581
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.165
   RMS: 0.587
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.416
   RMS: 0.760
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.384
   RMS: 0.827
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.970
   RMS: 0.880
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.505
   RMS: 0.724
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.399
   RMS: 0.549
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 3.917
   RMS: 0.514
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.118
   RMS: 0.874
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.211
   RMS: 0.363
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.127
   RMS: 0.777
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.822
   RMS: 0.383
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.741
   RMS: 0.586
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.228
   RMS: 0.741
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.450
   RMS: 0.801
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.702
   RMS: 0.972
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.761
   RMS: 0.517
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.971
   RMS: 0.780
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.348
   RMS: 0.828
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.744
   RMS: 0.850
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 3.559
   RMS: 0.651
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.972
   RMS: 0.494
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.701
   RMS: 0.367
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.651
   RMS: 0.329
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.027
   RMS: 1.027
   RMS: 0.807
   RMS: 1.027
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.620
   RMS: 0.440
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.644
   RMS: 0.488
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.699
   RMS: 0.730
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.711
   RMS: 0.805
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.915
   RMS: 0.371
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.375
   RMS: 0.435
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.018
   RMS: 0.704
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 2.871
   RMS: 0.938
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.909
   RMS: 0.835
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.101
   RMS: 0.838
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 3.403
   RMS: 0.359
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.072
   RMS: 2.072
   RMS: 13.386
   RMS: 2.072
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.143
   RMS: 0.720
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.421
   RMS: 0.810
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.263
   RMS: 0.263
   RMS: 0.624
   RMS: 0.263
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 2.123
   RMS: 0.862
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.726
   RMS: 0.976
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.337
   RMS: 0.876
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.597
   RMS: 0.773
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.258
   RMS: 0.807
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.618
   RMS: 1.618
   RMS: 1.299
   RMS: 1.618
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 3.396
   RMS: 0.437
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.685
   RMS: 0.444
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.797
   RMS: 0.824
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 3.244
   RMS: 0.405
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 3.132
   RMS: 0.355
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 0.875
   RMS: 0.319
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.495
   RMS: 0.846
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.935
   RMS: 0.570
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 2.951
   RMS: 0.755
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.790
   RMS: 0.766
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.504
   RMS: 0.778
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.284
   RMS: 0.284
   RMS: 0.853
   RMS: 0.284
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.866
   RMS: 0.570
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 1.168
   RMS: 1.058
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.202
   RMS: 0.792
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.702
   RMS: 0.807
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.822
   RMS: 0.823
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.239
   RMS: 0.826
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 1.809
   RMS: 0.622
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 1.461
   RMS: 0.331
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 0.532
   RMS: 0.292
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.127
   RMS: 0.821
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.090
   RMS: 0.828
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.102
   RMS: 0.683
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.904
   RMS: 0.660
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 3.835
   RMS: 0.365
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.732
   RMS: 0.457
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.374
   RMS: 0.848
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 0.948
   RMS: 0.960
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 1.091
   RMS: 0.657
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.820
   RMS: 0.350
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.402
   RMS: 0.404
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.776
   RMS: 0.500
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 1.440
   RMS: 0.602
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 1.046
   RMS: 0.657
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.288
   RMS: 0.745
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.448
   RMS: 0.774
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 2.256
   RMS: 0.841
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.302
   RMS: 0.302
   RMS: 0.842
   RMS: 0.302
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.136
   RMS: 0.820
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 3.354
   RMS: 0.722
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.116
   RMS: 0.794
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 1.077
   RMS: 0.433
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 1.007
   RMS: 0.548
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.350
   RMS: 0.762
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.513
   RMS: 0.821
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 1.211
   RMS: 0.575
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 1.600
   RMS: 0.615
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 3.317
   RMS: 0.514
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.719
   RMS: 0.491
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 0.657
   RMS: 0.325
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.703
   RMS: 0.706
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.634
   RMS: 0.555
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.640
   RMS: 0.828
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.906
   RMS: 0.479
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.313
   RMS: 0.686
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 3.559
   RMS: 0.374
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 3.312
   RMS: 0.370
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.562
   RMS: 0.462
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.606
   RMS: 0.744
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.190
   RMS: 0.737
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.112
   RMS: 0.839
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.604
   RMS: 0.812
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.914
   RMS: 0.811
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.467
   RMS: 0.867
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.301
   RMS: 0.875
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.051
   RMS: 0.844
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.264
   RMS: 0.264
   RMS: 0.556
   RMS: 0.264
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.825
   RMS: 0.439
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 2.905
   RMS: 0.914
   Unrecognised keyword: pdb1t3f_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 3.509
   RMS: 0.876
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1bfv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.541
   RMS: 0.774
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.945
   RMS: 0.638
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.469
   RMS: 0.924
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.435
   RMS: 0.927
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 4.209
   RMS: 0.480
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.074
   RMS: 0.803
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.520
   RMS: 0.702
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 0.413
   RMS: 1.006
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.898
   RMS: 0.943
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.359
   RMS: 0.805
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.203
   RMS: 0.873
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.466
   RMS: 0.734
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.838
   RMS: 0.661
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.700
   RMS: 0.871
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.956
   RMS: 0.856
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.066
   RMS: 1.066
   RMS: 1.113
   RMS: 1.066
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.877
   RMS: 0.649
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 4.008
   RMS: 0.560
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.917
   RMS: 0.882
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.079
   RMS: 1.005
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.242
   RMS: 0.728
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 5.049
   RMS: 0.801
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.383
   RMS: 0.776
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.382
   RMS: 0.723
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.797
   RMS: 0.905
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.938
   RMS: 0.611
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.000
   RMS: 0.674
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.824
   RMS: 0.511
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.636
   RMS: 0.735
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.088
   RMS: 0.892
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.854
   RMS: 0.473
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 4.230
   RMS: 0.458
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.839
   RMS: 0.707
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.253
   RMS: 0.836
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.307
   RMS: 0.881
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 2.023
   RMS: 1.024
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.928
   RMS: 0.783
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.861
   RMS: 5.861
   RMS: 16.393
   RMS: 5.861
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.442
   RMS: 0.611
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.438
   RMS: 0.832
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.704
   RMS: 0.929
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.977
   RMS: 0.769
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.291
   RMS: 0.896
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.961
   RMS: 0.854
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.772
   RMS: 0.680
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.759
   RMS: 0.683
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.931
   RMS: 0.589
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.693
   RMS: 0.810
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 1.305
   RMS: 0.920
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.039
   RMS: 0.620
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.352
   RMS: 0.626
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 4.791
   RMS: 0.721
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 0.545
   RMS: 1.041
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.822
   RMS: 0.715
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.494
   RMS: 0.774
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.884
   RMS: 0.889
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.468
   RMS: 0.832
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 1.115
   RMS: 0.578
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.715
   RMS: 0.834
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 0.700
   RMS: 1.019
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.025
   RMS: 0.879
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.752
   RMS: 0.927
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.297
   RMS: 0.873
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.449
   RMS: 0.870
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 4.008
   RMS: 0.679
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.655
   RMS: 0.711
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.879
   RMS: 0.720
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 1.250
   RMS: 0.715
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.193
   RMS: 1.193
   RMS: 1.135
   RMS: 1.193
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.198
   RMS: 0.754
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.869
   RMS: 0.584
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.338
   RMS: 0.607
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.811
   RMS: 0.527
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.461
   RMS: 0.813
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.799
   RMS: 0.726
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.415
   RMS: 0.667
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.392
   RMS: 0.721
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.900
   RMS: 0.847
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.131
   RMS: 0.758
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 4.230
   RMS: 0.763
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.108
   RMS: 2.108
   RMS: 13.954
   RMS: 2.108
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.439
   RMS: 0.854
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.220
   RMS: 0.868
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.125
   RMS: 0.789
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.799
   RMS: 0.898
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.043
   RMS: 1.043
   RMS: 0.530
   RMS: 1.043
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 0.717
   RMS: 0.980
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.252
   RMS: 0.817
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.579
   RMS: 0.890
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.852
   RMS: 1.852
   RMS: 1.197
   RMS: 1.852
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.855
   RMS: 0.734
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.691
   RMS: 0.782
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.866
   RMS: 0.909
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 4.149
   RMS: 0.750
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.734
   RMS: 0.771
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.319
   RMS: 0.794
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.309
   RMS: 0.792
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.032
   RMS: 0.918
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 3.421
   RMS: 0.436
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.525
   RMS: 0.839
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.913
   RMS: 0.779
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 2.016
   RMS: 0.800
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.312
   RMS: 0.863
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 0.707
   RMS: 1.111
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.549
   RMS: 0.855
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.850
   RMS: 0.519
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.714
   RMS: 0.479
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.574
   RMS: 0.567
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.652
   RMS: 0.752
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.805
   RMS: 0.775
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.417
   RMS: 0.780
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.874
   RMS: 0.891
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.149
   RMS: 0.836
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.213
   RMS: 0.744
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.782
   RMS: 0.658
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 4.328
   RMS: 0.828
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.304
   RMS: 0.706
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.541
   RMS: 0.910
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.871
   RMS: 1.035
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.607
   RMS: 0.546
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.804
   RMS: 0.696
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.208
   RMS: 0.749
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.666
   RMS: 0.623
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 1.001
   RMS: 0.669
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.670
   RMS: 0.747
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.233
   RMS: 0.822
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.535
   RMS: 0.866
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.358
   RMS: 0.873
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.936
   RMS: 0.752
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.531
   RMS: 0.633
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.616
   RMS: 0.510
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.790
   RMS: 0.580
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.903
   RMS: 0.739
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.758
   RMS: 0.561
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.595
   RMS: 0.732
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.134
   RMS: 0.846
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 0.952
   RMS: 0.599
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 2.032
   RMS: 0.940
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 3.834
   RMS: 0.881
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.779
   RMS: 0.779
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.973
   RMS: 0.701
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.900
   RMS: 0.696
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.813
   RMS: 0.561
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.569
   RMS: 0.869
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.796
   RMS: 0.652
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.647
   RMS: 0.757
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 4.342
   RMS: 0.780
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 4.126
   RMS: 0.705
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.178
   RMS: 0.734
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.977
   RMS: 0.614
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.485
   RMS: 0.778
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 0.444
   RMS: 0.928
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.046
   RMS: 0.941
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.693
   RMS: 0.533
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 0.518
   RMS: 0.991
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.561
   RMS: 0.854
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.821
   RMS: 0.943
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.147
   RMS: 0.799
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.726
   RMS: 0.696
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 3.182
   RMS: 0.627
   Unrecognised keyword: pdb1ce1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 4.217
   RMS: 0.804
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1bj1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.086
   RMS: 0.619
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.557
   RMS: 0.470
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.425
   RMS: 0.438
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 4.141
   RMS: 0.830
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.902
   RMS: 0.833
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.672
   RMS: 0.662
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.587
   RMS: 0.635
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.524
   RMS: 0.494
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.488
   RMS: 0.814
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.611
   RMS: 0.406
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.376
   RMS: 0.689
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 1.008
   RMS: 0.602
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.774
   RMS: 0.799
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.946
   RMS: 0.452
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 1.356
   RMS: 0.615
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.079
   RMS: 0.617
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.967
   RMS: 0.794
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.017
   RMS: 0.562
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.193
   RMS: 0.926
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.265
   RMS: 0.795
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 5.202
   RMS: 0.905
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.437
   RMS: 0.795
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.452
   RMS: 0.819
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 1.018
   RMS: 0.488
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.859
   RMS: 0.661
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.930
   RMS: 0.654
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.884
   RMS: 0.837
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.855
   RMS: 0.749
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.027
   RMS: 0.450
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.627
   RMS: 0.727
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 4.064
   RMS: 0.764
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.939
   RMS: 0.755
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.108
   RMS: 1.108
   RMS: 1.221
   RMS: 1.108
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.358
   RMS: 0.588
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.116
   RMS: 1.116
   RMS: 2.245
   RMS: 1.116
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.875
   RMS: 0.564
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.880
   RMS: 5.880
   RMS: 16.604
   RMS: 5.880
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.367
   RMS: 0.662
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.442
   RMS: 0.820
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.931
   RMS: 0.452
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 1.233
   RMS: 1.019
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 1.448
   RMS: 0.509
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.150
   RMS: 0.506
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.644
   RMS: 0.613
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.642
   RMS: 0.605
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.727
   RMS: 0.635
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.637
   RMS: 0.490
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 1.263
   RMS: 0.452
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.873
   RMS: 0.604
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.625
   RMS: 0.626
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 4.762
   RMS: 0.816
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 0.616
   RMS: 0.591
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.619
   RMS: 0.724
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.576
   RMS: 0.472
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.917
   RMS: 0.774
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.527
   RMS: 0.751
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.871
   RMS: 0.606
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.664
   RMS: 0.382
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.547
   RMS: 0.577
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.126
   RMS: 0.825
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.847
   RMS: 0.536
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.450
   RMS: 0.509
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.744
   RMS: 0.497
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.804
   RMS: 0.799
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.941
   RMS: 0.714
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.911
   RMS: 0.782
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.286
   RMS: 0.739
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.117
   RMS: 0.808
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.284
   RMS: 0.829
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.057
   RMS: 0.698
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 1.343
   RMS: 0.532
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.900
   RMS: 0.727
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.474
   RMS: 0.860
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.701
   RMS: 0.711
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 1.372
   RMS: 0.615
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 3.211
   RMS: 0.914
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.477
   RMS: 0.444
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.024
   RMS: 0.840
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 4.181
   RMS: 0.793
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.991
   RMS: 1.991
   RMS: 14.106
   RMS: 1.991
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.565
   RMS: 0.514
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.098
   RMS: 0.504
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.359
   RMS: 0.799
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.818
   RMS: 0.492
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.568
   RMS: 0.514
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.546
   RMS: 0.489
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 1.353
   RMS: 0.595
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.457
   RMS: 0.425
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.706
   RMS: 1.706
   RMS: 1.559
   RMS: 1.706
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.676
   RMS: 0.861
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.759
   RMS: 0.800
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.716
   RMS: 0.536
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 4.144
   RMS: 0.946
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.597
   RMS: 0.782
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.245
   RMS: 0.849
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.332
   RMS: 0.800
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.081
   RMS: 0.874
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.288
   RMS: 0.734
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 1.546
   RMS: 0.566
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.731
   RMS: 0.514
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 2.009
   RMS: 0.750
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.370
   RMS: 0.775
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.581
   RMS: 0.634
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.544
   RMS: 0.401
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.937
   RMS: 0.764
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.922
   RMS: 0.762
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.829
   RMS: 0.792
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.534
   RMS: 0.436
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.459
   RMS: 0.850
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.426
   RMS: 0.773
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.762
   RMS: 0.484
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.100
   RMS: 0.499
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 1.126
   RMS: 0.480
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.818
   RMS: 0.483
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 4.151
   RMS: 0.807
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.291
   RMS: 0.869
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.276
   RMS: 0.436
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.197
   RMS: 1.197
   RMS: 2.075
   RMS: 1.197
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.598
   RMS: 0.755
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.820
   RMS: 0.764
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.303
   RMS: 0.873
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.819
   RMS: 0.559
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.919
   RMS: 0.639
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.720
   RMS: 0.831
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.601
   RMS: 0.449
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.272
   RMS: 0.402
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.194
   RMS: 0.471
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.914
   RMS: 0.791
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.579
   RMS: 0.573
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.463
   RMS: 0.687
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.688
   RMS: 0.676
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.874
   RMS: 0.775
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.732
   RMS: 0.601
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.385
   RMS: 0.618
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.179
   RMS: 0.555
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.820
   RMS: 0.508
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.955
   RMS: 0.908
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.775
   RMS: 0.951
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.807
   RMS: 0.866
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.060
   RMS: 0.796
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 3.703
   RMS: 0.485
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.942
   RMS: 0.614
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.312
   RMS: 0.466
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.896
   RMS: 0.606
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.390
   RMS: 0.450
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 4.275
   RMS: 0.833
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 4.074
   RMS: 0.818
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.206
   RMS: 0.826
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.224
   RMS: 0.633
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.446
   RMS: 0.516
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 0.529
   RMS: 0.502
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.275
   RMS: 0.468
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.699
   RMS: 0.757
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.367
   RMS: 0.563
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.705
   RMS: 0.745
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.740
   RMS: 0.582
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.350
   RMS: 0.765
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.411
   RMS: 0.812
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 2.960
   RMS: 0.743
   Unrecognised keyword: pdb1bfv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 4.075
   RMS: 0.663
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1bln_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.027
   RMS: 0.666
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.878
   RMS: 0.630
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 3.704
   RMS: 0.701
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.970
   RMS: 0.542
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.659
   RMS: 0.766
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.845
   RMS: 0.731
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.266
   RMS: 0.706
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.494
   RMS: 0.495
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.945
   RMS: 0.593
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.937
   RMS: 0.520
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.171
   RMS: 0.171
   RMS: 0.190
   RMS: 0.171
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.842
   RMS: 0.508
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.741
   RMS: 0.576
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.812
   RMS: 0.828
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.513
   RMS: 0.602
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.451
   RMS: 0.679
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.390
   RMS: 0.543
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.971
   RMS: 0.877
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.667
   RMS: 0.561
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 4.413
   RMS: 0.662
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.868
   RMS: 0.581
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.623
   RMS: 0.612
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.184
   RMS: 0.677
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.529
   RMS: 0.553
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.526
   RMS: 0.687
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.350
   RMS: 0.666
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.504
   RMS: 0.545
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.554
   RMS: 0.649
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.880
   RMS: 0.638
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.847
   RMS: 0.636
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.406
   RMS: 0.488
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.674
   RMS: 0.780
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.710
   RMS: 0.555
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.458
   RMS: 0.877
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.656
   RMS: 0.424
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.851
   RMS: 5.851
   RMS: 16.446
   RMS: 5.851
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.031
   RMS: 0.670
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.765
   RMS: 0.523
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.721
   RMS: 0.686
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.450
   RMS: 0.710
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.451
   RMS: 0.546
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.276
   RMS: 0.575
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.825
   RMS: 0.504
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.780
   RMS: 0.487
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 1.141
   RMS: 0.680
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.052
   RMS: 0.636
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.526
   RMS: 0.688
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.183
   RMS: 0.600
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.926
   RMS: 0.501
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 4.240
   RMS: 0.467
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.617
   RMS: 0.705
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.909
   RMS: 0.556
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.686
   RMS: 0.558
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.467
   RMS: 0.616
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.796
   RMS: 0.479
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 1.020
   RMS: 0.584
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.044
   RMS: 0.605
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.313
   RMS: 0.815
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.558
   RMS: 0.640
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.564
   RMS: 0.622
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.919
   RMS: 0.635
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.267
   RMS: 0.610
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 3.708
   RMS: 0.593
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.575
   RMS: 0.509
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.428
   RMS: 0.547
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.596
   RMS: 0.463
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.602
   RMS: 0.857
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.553
   RMS: 0.579
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.320
   RMS: 0.496
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.683
   RMS: 0.576
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.371
   RMS: 0.685
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.899
   RMS: 0.583
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.953
   RMS: 0.513
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.986
   RMS: 0.521
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.021
   RMS: 0.769
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.463
   RMS: 0.663
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.916
   RMS: 0.748
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 3.688
   RMS: 0.545
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.985
   RMS: 1.985
   RMS: 13.481
   RMS: 1.985
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.723
   RMS: 0.467
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.052
   RMS: 0.600
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 0.601
   RMS: 0.566
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.660
   RMS: 0.713
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.249
   RMS: 0.791
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.922
   RMS: 0.704
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.625
   RMS: 0.549
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.864
   RMS: 0.616
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.748
   RMS: 1.748
   RMS: 1.056
   RMS: 1.748
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 3.549
   RMS: 0.645
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 0.910
   RMS: 0.442
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 1.339
   RMS: 0.637
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 3.563
   RMS: 0.609
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.331
   RMS: 0.583
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.818
   RMS: 0.624
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.546
   RMS: 0.766
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.581
   RMS: 0.598
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.100
   RMS: 0.635
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.883
   RMS: 0.592
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 1.182
   RMS: 0.557
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.174
   RMS: 0.515
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.649
   RMS: 0.550
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.756
   RMS: 0.870
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.834
   RMS: 0.635
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.432
   RMS: 0.708
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.490
   RMS: 0.682
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.870
   RMS: 0.699
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 1.333
   RMS: 0.585
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 1.047
   RMS: 0.581
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.620
   RMS: 0.534
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.761
   RMS: 0.597
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.844
   RMS: 0.593
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.901
   RMS: 0.480
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.641
   RMS: 0.433
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.993
   RMS: 0.628
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.698
   RMS: 0.636
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.937
   RMS: 0.681
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.157
   RMS: 0.852
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.709
   RMS: 0.551
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.478
   RMS: 0.511
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.501
   RMS: 0.569
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.328
   RMS: 0.462
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.090
   RMS: 0.531
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 1.060
   RMS: 0.593
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.818
   RMS: 0.560
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 1.018
   RMS: 0.593
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 1.808
   RMS: 0.657
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.572
   RMS: 0.546
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.665
   RMS: 0.640
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 3.447
   RMS: 0.586
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.802
   RMS: 0.633
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.821
   RMS: 0.602
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.655
   RMS: 0.489
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.895
   RMS: 0.489
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.372
   RMS: 0.559
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.944
   RMS: 0.500
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.617
   RMS: 0.720
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.507
   RMS: 0.682
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.965
   RMS: 0.496
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.419
   RMS: 0.542
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 3.771
   RMS: 0.542
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 0.274
   RMS: 0.434
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.198
   RMS: 0.633
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.466
   RMS: 0.471
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.920
   RMS: 0.553
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.832
   RMS: 0.553
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 3.600
   RMS: 0.542
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.541
   RMS: 0.574
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.424
   RMS: 0.598
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.768
   RMS: 0.519
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.676
   RMS: 0.660
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.503
   RMS: 0.668
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.576
   RMS: 0.696
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.016
   RMS: 0.678
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.952
   RMS: 0.773
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.728
   RMS: 0.701
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.468
   RMS: 0.491
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 1.662
   RMS: 0.584
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 2.970
   RMS: 0.706
   Unrecognised keyword: pdb1bj1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 3.745
   RMS: 0.740
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1bz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.300
   RMS: 0.408
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 4.060
   RMS: 0.979
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.900
   RMS: 0.877
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.723
   RMS: 0.829
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.601
   RMS: 0.557
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.628
   RMS: 0.406
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.459
   RMS: 0.829
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.519
   RMS: 0.360
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.329
   RMS: 0.806
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.989
   RMS: 0.644
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.704
   RMS: 0.847
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.781
   RMS: 0.354
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 1.428
   RMS: 0.580
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.128
   RMS: 0.766
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 3.883
   RMS: 0.918
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.017
   RMS: 0.430
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.309
   RMS: 0.881
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.203
   RMS: 0.859
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 5.033
   RMS: 0.968
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.312
   RMS: 0.886
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.394
   RMS: 0.870
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 1.062
   RMS: 0.416
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.837
   RMS: 0.790
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.917
   RMS: 0.764
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 0.808
   RMS: 0.952
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.875
   RMS: 0.825
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 1.102
   RMS: 0.423
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.837
   RMS: 0.896
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 4.068
   RMS: 0.906
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.814
   RMS: 0.837
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.150
   RMS: 1.150
   RMS: 1.294
   RMS: 1.150
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 1.180
   RMS: 0.514
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.165
   RMS: 1.165
   RMS: 2.268
   RMS: 1.165
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.861
   RMS: 0.510
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.923
   RMS: 5.923
   RMS: 16.663
   RMS: 5.923
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.300
   RMS: 0.771
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.380
   RMS: 0.892
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.927
   RMS: 0.397
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 1.124
   RMS: 1.075
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 1.320
   RMS: 0.460
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 1.005
   RMS: 0.446
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.642
   RMS: 0.728
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.672
   RMS: 0.723
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.743
   RMS: 0.811
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.740
   RMS: 0.457
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 1.394
   RMS: 0.432
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.739
   RMS: 0.718
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.407
   RMS: 0.773
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 4.687
   RMS: 0.877
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.615
   RMS: 0.517
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.811
   RMS: 0.822
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.528
   RMS: 0.437
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.944
   RMS: 0.825
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.381
   RMS: 0.825
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.947
   RMS: 0.708
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.336
   RMS: 0.424
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.828
   RMS: 0.526
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.048
   RMS: 0.878
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.665
   RMS: 0.463
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.508
   RMS: 0.480
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.674
   RMS: 0.417
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.835
   RMS: 0.899
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.965
   RMS: 0.777
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.927
   RMS: 0.882
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.169
   RMS: 0.838
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.121
   RMS: 0.716
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.143
   RMS: 0.860
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.941
   RMS: 0.790
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.230
   RMS: 0.744
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 0.814
   RMS: 0.858
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.329
   RMS: 0.881
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.540
   RMS: 0.794
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.283
   RMS: 0.608
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 3.235
   RMS: 1.004
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.698
   RMS: 0.464
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.939
   RMS: 0.887
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 4.117
   RMS: 0.844
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.018
   RMS: 2.018
   RMS: 13.976
   RMS: 2.018
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.620
   RMS: 0.443
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 1.213
   RMS: 0.406
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.356
   RMS: 0.853
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.928
   RMS: 0.445
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.536
   RMS: 0.462
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.605
   RMS: 0.432
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.205
   RMS: 0.562
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.532
   RMS: 0.356
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.825
   RMS: 1.825
   RMS: 1.433
   RMS: 1.825
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 3.698
   RMS: 0.946
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.640
   RMS: 0.859
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.602
   RMS: 0.477
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 4.062
   RMS: 1.007
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 3.644
   RMS: 0.856
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.229
   RMS: 0.917
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.330
   RMS: 0.927
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 0.976
   RMS: 0.933
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 3.333
   RMS: 0.914
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 1.480
   RMS: 0.560
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.686
   RMS: 0.414
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.956
   RMS: 0.795
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.302
   RMS: 0.820
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.601
   RMS: 0.617
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.590
   RMS: 0.410
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.875
   RMS: 0.916
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.820
   RMS: 0.915
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.870
   RMS: 0.892
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.525
   RMS: 0.527
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 0.798
   RMS: 0.902
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.387
   RMS: 0.827
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.603
   RMS: 0.447
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.950
   RMS: 0.450
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.987
   RMS: 0.484
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.790
   RMS: 0.522
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 4.154
   RMS: 0.876
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 1.309
   RMS: 0.949
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.500
   RMS: 0.402
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.181
   RMS: 1.181
   RMS: 2.055
   RMS: 1.181
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.567
   RMS: 0.898
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.754
   RMS: 0.835
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.302
   RMS: 0.932
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.767
   RMS: 0.718
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.908
   RMS: 0.757
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 1.588
   RMS: 0.940
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.544
   RMS: 0.398
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.471
   RMS: 0.407
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 1.481
   RMS: 0.413
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.856
   RMS: 0.848
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.613
   RMS: 0.729
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.495
   RMS: 0.748
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.607
   RMS: 0.768
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.111
   RMS: 0.877
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.760
   RMS: 0.793
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.515
   RMS: 0.614
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 1.117
   RMS: 0.533
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.747
   RMS: 0.671
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 1.799
   RMS: 1.010
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 3.755
   RMS: 1.015
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.708
   RMS: 0.943
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.894
   RMS: 0.865
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 3.748
   RMS: 0.571
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.857
   RMS: 0.799
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.475
   RMS: 0.416
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.741
   RMS: 0.786
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.517
   RMS: 0.524
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 4.207
   RMS: 0.889
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 4.018
   RMS: 0.916
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.198
   RMS: 0.902
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.183
   RMS: 0.793
   Unrecognised keyword: pdb1bln_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 0.470
   RMS: 0.502
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.558
   RMS: 0.437
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 1.044
   RMS: 0.365
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.656
   RMS: 0.891
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.414
   RMS: 0.423
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.678
   RMS: 0.803
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.654
   RMS: 0.503
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.217
   RMS: 0.796
   Unrecognised keyword: pdb1bln_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.497
   RMS: 0.886
   Unrecognised keyword: pdb1bln_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 3.028
   RMS: 0.881
   Unrecognised keyword: pdb1bln_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 4.025
   RMS: 0.790
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1c12_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 4.000
   RMS: 0.967
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.792
   RMS: 0.866
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.597
   RMS: 0.813
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.560
   RMS: 0.538
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 0.572
   RMS: 0.362
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.311
   RMS: 0.825
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 0.469
   RMS: 0.301
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.179
   RMS: 0.770
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.824
   RMS: 0.624
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.571
   RMS: 0.786
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.682
   RMS: 0.332
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 1.289
   RMS: 0.512
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.952
   RMS: 0.744
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.810
   RMS: 0.903
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.869
   RMS: 0.473
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.342
   RMS: 0.902
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.069
   RMS: 0.865
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 4.985
   RMS: 0.968
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.145
   RMS: 0.854
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.260
   RMS: 0.896
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.989
   RMS: 0.371
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 3.765
   RMS: 0.773
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.787
   RMS: 0.762
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.644
   RMS: 0.950
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.709
   RMS: 0.812
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.933
   RMS: 0.353
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.623
   RMS: 0.873
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 4.003
   RMS: 0.901
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.690
   RMS: 0.848
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.158
   RMS: 1.158
   RMS: 1.206
   RMS: 1.158
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.089
   RMS: 0.482
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.166
   RMS: 1.166
   RMS: 2.170
   RMS: 1.166
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.695
   RMS: 0.514
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.880
   RMS: 5.880
   RMS: 16.546
   RMS: 5.880
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.192
   RMS: 0.759
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.285
   RMS: 0.856
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 0.786
   RMS: 0.301
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.094
   RMS: 1.094
   RMS: 1.041
   RMS: 1.094
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 1.207
   RMS: 0.379
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.878
   RMS: 0.383
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.433
   RMS: 0.710
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.449
   RMS: 0.700
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.720
   RMS: 0.795
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.644
   RMS: 0.431
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 1.350
   RMS: 0.330
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.755
   RMS: 0.734
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.402
   RMS: 0.740
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 4.622
   RMS: 0.837
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.419
   RMS: 0.426
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.652
   RMS: 0.819
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.330
   RMS: 0.428
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.711
   RMS: 0.817
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.307
   RMS: 0.793
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.831
   RMS: 0.691
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.370
   RMS: 0.376
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.731
   RMS: 0.483
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.962
   RMS: 0.877
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.599
   RMS: 0.433
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 0.369
   RMS: 0.418
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 0.715
   RMS: 0.331
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 3.762
   RMS: 0.895
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.815
   RMS: 0.746
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.767
   RMS: 0.880
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.067
   RMS: 0.830
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.933
   RMS: 0.630
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.057
   RMS: 0.864
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.855
   RMS: 0.802
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.108
   RMS: 0.730
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.699
   RMS: 0.865
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.264
   RMS: 0.882
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.449
   RMS: 0.755
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 1.198
   RMS: 0.616
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.982
   RMS: 0.982
   RMS: 3.149
   RMS: 0.982
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.689
   RMS: 0.368
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.870
   RMS: 0.873
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 4.047
   RMS: 0.857
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.965
   RMS: 1.965
   RMS: 13.972
   RMS: 1.965
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.475
   RMS: 0.436
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 1.129
   RMS: 0.344
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.233
   RMS: 0.852
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.955
   RMS: 0.393
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.506
   RMS: 0.375
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.422
   RMS: 0.363
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 1.135
   RMS: 0.493
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.293
   RMS: 0.293
   RMS: 0.361
   RMS: 0.293
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.814
   RMS: 1.814
   RMS: 1.424
   RMS: 1.814
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 3.640
   RMS: 0.960
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.535
   RMS: 0.842
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.582
   RMS: 0.424
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 3.993
   RMS: 1.017
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.556
   RMS: 0.841
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.077
   RMS: 0.901
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 1.190
   RMS: 0.916
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.932
   RMS: 0.889
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.242
   RMS: 0.879
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.402
   RMS: 0.552
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.649
   RMS: 0.423
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.850
   RMS: 0.775
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.226
   RMS: 0.797
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.364
   RMS: 0.520
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 0.426
   RMS: 0.301
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.741
   RMS: 0.922
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.699
   RMS: 0.894
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.753
   RMS: 0.876
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.547
   RMS: 0.540
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.652
   RMS: 0.911
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.257
   RMS: 0.827
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.524
   RMS: 0.353
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.843
   RMS: 0.440
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.919
   RMS: 0.501
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.659
   RMS: 0.504
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 4.094
   RMS: 0.867
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.185
   RMS: 0.970
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.295
   RMS: 0.324
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.166
   RMS: 1.166
   RMS: 1.938
   RMS: 1.166
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.411
   RMS: 0.874
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.621
   RMS: 0.821
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 1.157
   RMS: 0.939
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.591
   RMS: 0.676
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.816
   RMS: 0.717
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 1.511
   RMS: 0.930
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.421
   RMS: 0.353
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.299
   RMS: 0.299
   RMS: 0.269
   RMS: 0.299
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.347
   RMS: 0.347
   RMS: 1.434
   RMS: 0.347
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.701
   RMS: 0.843
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.422
   RMS: 0.711
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 3.447
   RMS: 0.760
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.498
   RMS: 0.766
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.900
   RMS: 0.854
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.525
   RMS: 0.773
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.397
   RMS: 0.522
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.945
   RMS: 0.446
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.623
   RMS: 0.623
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 1.779
   RMS: 0.980
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 3.696
   RMS: 0.991
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 1.604
   RMS: 0.916
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.786
   RMS: 0.861
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 3.699
   RMS: 0.505
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.712
   RMS: 0.752
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 0.370
   RMS: 0.323
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.640
   RMS: 0.760
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.384
   RMS: 0.466
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 4.144
   RMS: 0.890
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 3.946
   RMS: 0.887
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.046
   RMS: 0.902
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.036
   RMS: 0.770
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.290
   RMS: 0.444
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 0.395
   RMS: 0.349
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.969
   RMS: 0.339
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.516
   RMS: 0.894
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 0.388
   RMS: 0.373
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.667
   RMS: 0.762
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.521
   RMS: 0.460
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.132
   RMS: 0.775
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.416
   RMS: 0.883
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 2.957
   RMS: 0.888
   Unrecognised keyword: pdb1bz7_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.970
   RMS: 0.756
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1c1e_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.700
   RMS: 0.812
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.956
   RMS: 0.663
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 4.123
   RMS: 1.021
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 3.963
   RMS: 0.963
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.560
   RMS: 0.838
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 4.225
   RMS: 0.909
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.241
   RMS: 0.721
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 3.816
   RMS: 0.735
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.213
   RMS: 0.863
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.573
   RMS: 0.903
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.072
   RMS: 1.072
   RMS: 4.100
   RMS: 1.072
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 3.881
   RMS: 0.504
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.767
   RMS: 0.374
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.652
   RMS: 0.906
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.129
   RMS: 1.129
   RMS: 4.979
   RMS: 1.129
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 3.295
   RMS: 0.778
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 2.367
   RMS: 0.775
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 4.046
   RMS: 0.767
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.290
   RMS: 0.817
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 4.341
   RMS: 0.945
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.922
   RMS: 0.631
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 3.524
   RMS: 0.673
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 3.717
   RMS: 0.391
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.991
   RMS: 0.743
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 3.466
   RMS: 0.956
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 3.684
   RMS: 0.392
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 1.357
   RMS: 0.318
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.662
   RMS: 0.717
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.730
   RMS: 0.827
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.263
   RMS: 0.906
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 3.868
   RMS: 1.039
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.620
   RMS: 0.803
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.857
   RMS: 5.857
   RMS: 17.781
   RMS: 5.857
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 4.101
   RMS: 0.587
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.282
   RMS: 0.817
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 3.972
   RMS: 0.973
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.747
   RMS: 0.796
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 3.443
   RMS: 0.909
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 3.655
   RMS: 0.894
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.842
   RMS: 0.662
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 3.862
   RMS: 0.651
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.714
   RMS: 0.601
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.936
   RMS: 0.862
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 4.736
   RMS: 0.958
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 3.711
   RMS: 0.608
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 4.177
   RMS: 0.646
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.261
   RMS: 0.792
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.027
   RMS: 1.027
   RMS: 4.001
   RMS: 1.027
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 3.795
   RMS: 0.763
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 3.924
   RMS: 0.830
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.719
   RMS: 0.899
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.312
   RMS: 0.885
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 3.466
   RMS: 0.626
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.898
   RMS: 0.891
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.068
   RMS: 1.068
   RMS: 4.244
   RMS: 1.068
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.614
   RMS: 0.834
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 3.715
   RMS: 0.953
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 4.082
   RMS: 0.894
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 4.522
   RMS: 0.919
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.702
   RMS: 0.688
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 4.104
   RMS: 0.686
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 3.602
   RMS: 0.725
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 3.359
   RMS: 0.707
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.128
   RMS: 1.128
   RMS: 3.564
   RMS: 1.128
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 3.398
   RMS: 0.761
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.731
   RMS: 0.623
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.295
   RMS: 0.614
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 3.671
   RMS: 0.592
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.241
   RMS: 0.833
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.879
   RMS: 0.720
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 3.283
   RMS: 0.723
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 1.439
   RMS: 0.616
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 4.221
   RMS: 0.905
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 3.424
   RMS: 0.765
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.602
   RMS: 0.811
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.107
   RMS: 2.107
   RMS: 13.919
   RMS: 2.107
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.932
   RMS: 0.902
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 4.091
   RMS: 0.913
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.763
   RMS: 0.809
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 4.690
   RMS: 0.948
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 4.379
   RMS: 1.074
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 3.916
   RMS: 1.004
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.343
   RMS: 0.847
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.847
   RMS: 0.951
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.775
   RMS: 1.775
   RMS: 4.277
   RMS: 1.775
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.344
   RMS: 0.756
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.153
   RMS: 0.802
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 4.172
   RMS: 0.947
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.771
   RMS: 0.769
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.619
   RMS: 0.809
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.329
   RMS: 0.799
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.398
   RMS: 0.678
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 3.737
   RMS: 0.895
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 1.480
   RMS: 0.314
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 3.263
   RMS: 0.883
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 3.772
   RMS: 0.850
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 2.927
   RMS: 0.800
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.728
   RMS: 0.796
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 3.804
   RMS: 1.111
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 3.865
   RMS: 0.881
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 3.692
   RMS: 0.407
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.305
   RMS: 0.305
   RMS: 3.835
   RMS: 0.305
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 4.217
   RMS: 0.475
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 4.323
   RMS: 0.820
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.982
   RMS: 0.776
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 3.322
   RMS: 0.808
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 3.701
   RMS: 0.944
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.544
   RMS: 0.863
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.401
   RMS: 0.753
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.634
   RMS: 0.721
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.755
   RMS: 0.829
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.400
   RMS: 0.738
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.995
   RMS: 0.935
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 3.795
   RMS: 1.040
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 3.798
   RMS: 0.613
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.629
   RMS: 0.745
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.447
   RMS: 0.768
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.810
   RMS: 0.629
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.940
   RMS: 0.625
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 3.427
   RMS: 0.708
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 4.165
   RMS: 0.859
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 4.009
   RMS: 0.926
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 4.887
   RMS: 0.944
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.546
   RMS: 0.790
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 4.021
   RMS: 0.597
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.776
   RMS: 0.574
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 3.646
   RMS: 0.586
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.906
   RMS: 0.772
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 3.813
   RMS: 0.586
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 3.979
   RMS: 0.773
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.479
   RMS: 0.890
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.587
   RMS: 0.662
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.080
   RMS: 0.890
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.341
   RMS: 0.880
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.116
   RMS: 0.817
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 3.528
   RMS: 0.723
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 2.162
   RMS: 0.780
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.670
   RMS: 0.583
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 4.158
   RMS: 0.900
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.770
   RMS: 0.661
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.862
   RMS: 0.799
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.633
   RMS: 0.773
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.495
   RMS: 0.715
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.418
   RMS: 0.748
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.832
   RMS: 0.598
   Unrecognised keyword: pdb1c12_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.898
   RMS: 0.812
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 3.933
   RMS: 0.953
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.551
   RMS: 0.984
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 3.688
   RMS: 0.557
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 4.062
   RMS: 1.019
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.980
   RMS: 0.868
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 3.621
   RMS: 0.959
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.609
   RMS: 0.811
   Unrecognised keyword: pdb1c12_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 3.350
   RMS: 0.773
   Unrecognised keyword: pdb1c12_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 1.940
   RMS: 0.551
   Unrecognised keyword: pdb1c12_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.830
   RMS: 0.764
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1c5d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.855
   RMS: 0.974
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.094
   RMS: 0.908
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.847
   RMS: 0.894
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 1.378
   RMS: 0.401
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.155
   RMS: 0.808
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.705
   RMS: 0.706
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.023
   RMS: 0.541
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.292
   RMS: 0.564
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.460
   RMS: 0.761
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 1.507
   RMS: 0.995
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.231
   RMS: 0.798
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.615
   RMS: 0.873
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.842
   RMS: 0.741
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 2.005
   RMS: 1.000
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.888
   RMS: 0.611
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 4.827
   RMS: 0.663
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.781
   RMS: 0.673
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.029
   RMS: 0.666
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.669
   RMS: 0.857
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.493
   RMS: 0.681
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.656
   RMS: 0.903
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.799
   RMS: 0.724
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.163
   RMS: 0.648
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.899
   RMS: 0.876
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.721
   RMS: 0.830
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 3.591
   RMS: 0.819
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.789
   RMS: 0.533
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.106
   RMS: 0.733
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.062
   RMS: 0.711
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 2.294
   RMS: 0.971
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.387
   RMS: 0.577
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.940
   RMS: 5.940
   RMS: 16.747
   RMS: 5.940
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.876
   RMS: 0.864
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.919
   RMS: 0.646
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.258
   RMS: 0.891
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.232
   RMS: 0.674
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.100
   RMS: 0.803
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.966
   RMS: 0.860
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.499
   RMS: 0.532
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.522
   RMS: 0.530
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.857
   RMS: 0.890
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.195
   RMS: 0.830
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.536
   RMS: 0.926
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.560
   RMS: 0.774
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 1.092
   RMS: 0.657
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 4.209
   RMS: 0.369
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.755
   RMS: 0.848
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.956
   RMS: 0.646
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.936
   RMS: 0.784
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.812
   RMS: 0.712
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.931
   RMS: 0.481
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.654
   RMS: 0.837
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.818
   RMS: 0.822
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.368
   RMS: 0.970
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.952
   RMS: 0.798
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.880
   RMS: 0.820
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.045
   RMS: 0.829
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.403
   RMS: 0.830
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.317
   RMS: 0.721
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.217
   RMS: 0.636
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.869
   RMS: 0.662
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.813
   RMS: 0.541
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 0.578
   RMS: 0.986
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.838
   RMS: 0.616
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.900
   RMS: 0.686
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.820
   RMS: 0.841
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.752
   RMS: 0.898
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.929
   RMS: 0.683
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.697
   RMS: 0.565
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.694
   RMS: 0.657
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 2.953
   RMS: 0.886
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.060
   RMS: 0.861
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.575
   RMS: 0.883
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.687
   RMS: 0.615
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.113
   RMS: 2.113
   RMS: 13.715
   RMS: 2.113
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.981
   RMS: 0.704
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.015
   RMS: 0.795
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.454
   RMS: 0.636
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.637
   RMS: 0.943
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 1.079
   RMS: 1.019
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.463
   RMS: 0.913
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.114
   RMS: 0.785
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.661
   RMS: 0.829
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.854
   RMS: 1.854
   RMS: 1.750
   RMS: 1.854
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 3.341
   RMS: 0.713
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.231
   RMS: 0.380
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.998
   RMS: 0.792
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 3.733
   RMS: 0.637
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.139
   RMS: 0.678
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.601
   RMS: 0.656
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.002
   RMS: 0.927
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.759
   RMS: 0.408
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 2.976
   RMS: 0.810
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.078
   RMS: 0.825
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.731
   RMS: 0.744
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.498
   RMS: 0.604
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.973
   RMS: 0.523
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.114
   RMS: 1.114
   RMS: 0.521
   RMS: 1.114
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.954
   RMS: 0.835
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.946
   RMS: 0.828
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.124
   RMS: 0.841
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.346
   RMS: 0.874
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.162
   RMS: 0.764
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.644
   RMS: 0.645
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.935
   RMS: 0.657
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.560
   RMS: 0.829
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.409
   RMS: 0.801
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.595
   RMS: 0.706
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.927
   RMS: 0.679
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 3.605
   RMS: 0.656
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.905
   RMS: 0.719
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.820
   RMS: 0.885
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.958
   RMS: 0.978
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.696
   RMS: 0.741
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.622
   RMS: 0.642
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.144
   RMS: 0.635
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.885
   RMS: 0.600
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.535
   RMS: 0.672
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.112
   RMS: 0.744
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.993
   RMS: 0.742
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.792
   RMS: 0.797
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.696
   RMS: 0.847
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.539
   RMS: 0.607
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.731
   RMS: 0.873
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.188
   RMS: 0.727
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.595
   RMS: 0.851
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 1.236
   RMS: 0.664
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.611
   RMS: 0.647
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.783
   RMS: 0.707
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.834
   RMS: 0.778
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.572
   RMS: 0.624
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.223
   RMS: 0.832
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.393
   RMS: 0.753
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 1.216
   RMS: 0.373
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.787
   RMS: 0.665
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.345
   RMS: 0.783
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.889
   RMS: 0.640
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.916
   RMS: 0.830
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.766
   RMS: 0.618
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.764
   RMS: 0.816
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 3.770
   RMS: 0.656
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 3.632
   RMS: 0.653
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.851
   RMS: 0.657
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.311
   RMS: 0.829
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.698
   RMS: 0.760
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.771
   RMS: 0.873
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.010
   RMS: 0.845
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.717
   RMS: 0.916
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.711
   RMS: 0.853
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 1.201
   RMS: 1.010
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 0.555
   RMS: 0.944
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.078
   RMS: 0.597
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.112
   RMS: 0.635
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 2.820
   RMS: 0.931
   Unrecognised keyword: pdb1c1e_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 3.587
   RMS: 0.924
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nbv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.483
   RMS: 0.910
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.011
   RMS: 0.808
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 1.075
   RMS: 0.989
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.558
   RMS: 0.774
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.148
   RMS: 0.740
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.572
   RMS: 0.771
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 1.320
   RMS: 0.939
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.750
   RMS: 0.800
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 0.858
   RMS: 0.931
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.605
   RMS: 0.612
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.779
   RMS: 0.578
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.509
   RMS: 0.809
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.138
   RMS: 1.138
   RMS: 1.463
   RMS: 1.138
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.915
   RMS: 0.837
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 4.790
   RMS: 0.881
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.565
   RMS: 0.844
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.994
   RMS: 0.861
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.028
   RMS: 0.860
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 3.683
   RMS: 0.707
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.660
   RMS: 0.623
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.607
   RMS: 0.722
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.577
   RMS: 0.799
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.736
   RMS: 0.801
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.667
   RMS: 0.556
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 3.940
   RMS: 0.568
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.598
   RMS: 0.816
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 0.931
   RMS: 1.016
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.115
   RMS: 0.912
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.094
   RMS: 1.094
   RMS: 1.724
   RMS: 1.094
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.628
   RMS: 0.831
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.851
   RMS: 5.851
   RMS: 16.406
   RMS: 5.851
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 0.698
   RMS: 0.529
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.069
   RMS: 0.879
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.647
   RMS: 0.812
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 0.701
   RMS: 0.957
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.961
   RMS: 0.811
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.686
   RMS: 0.740
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.670
   RMS: 0.724
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.635
   RMS: 0.731
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.887
   RMS: 0.498
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.786
   RMS: 0.799
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.333
   RMS: 0.792
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.975
   RMS: 0.493
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.715
   RMS: 0.714
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 4.470
   RMS: 0.949
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 0.470
   RMS: 0.984
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.710
   RMS: 0.812
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.576
   RMS: 0.755
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.677
   RMS: 0.876
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.126
   RMS: 0.951
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.900
   RMS: 0.549
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.894
   RMS: 0.746
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.909
   RMS: 0.921
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.651
   RMS: 0.812
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.682
   RMS: 0.840
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.531
   RMS: 0.809
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.887
   RMS: 0.813
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.745
   RMS: 0.832
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.535
   RMS: 0.780
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.550
   RMS: 0.779
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.921
   RMS: 0.769
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 0.800
   RMS: 1.089
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.881
   RMS: 0.857
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.519
   RMS: 0.672
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.038
   RMS: 0.617
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.472
   RMS: 0.542
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.177
   RMS: 0.859
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.894
   RMS: 0.813
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.072
   RMS: 0.763
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.213
   RMS: 0.794
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.097
   RMS: 0.771
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.894
   RMS: 0.804
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.946
   RMS: 0.879
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.040
   RMS: 2.040
   RMS: 13.714
   RMS: 2.040
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.400
   RMS: 0.814
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.022
   RMS: 0.820
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.838
   RMS: 0.874
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.217
   RMS: 0.791
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.835
   RMS: 0.845
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.621
   RMS: 0.822
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.002
   RMS: 0.803
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.482
   RMS: 0.796
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.638
   RMS: 1.638
   RMS: 1.054
   RMS: 1.638
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.635
   RMS: 0.832
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.357
   RMS: 0.912
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.117
   RMS: 0.875
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 3.880
   RMS: 0.905
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.409
   RMS: 0.815
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.972
   RMS: 0.875
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.896
   RMS: 0.667
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 0.784
   RMS: 1.036
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.173
   RMS: 0.578
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.118
   RMS: 0.758
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.905
   RMS: 0.775
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.643
   RMS: 0.879
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.998
   RMS: 0.890
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.596
   RMS: 0.913
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.566
   RMS: 0.768
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.593
   RMS: 0.583
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.635
   RMS: 0.539
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.706
   RMS: 0.598
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 1.029
   RMS: 0.675
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.657
   RMS: 0.859
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.022
   RMS: 0.860
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.779
   RMS: 0.814
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.928
   RMS: 0.744
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.019
   RMS: 0.700
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.605
   RMS: 0.701
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 4.059
   RMS: 0.880
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.862
   RMS: 0.823
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.628
   RMS: 0.781
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.191
   RMS: 1.191
   RMS: 1.541
   RMS: 1.191
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.477
   RMS: 0.759
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.525
   RMS: 0.814
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.821
   RMS: 0.871
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.461
   RMS: 0.653
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.807
   RMS: 0.677
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.322
   RMS: 0.870
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.423
   RMS: 0.746
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.647
   RMS: 0.791
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.440
   RMS: 0.818
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.664
   RMS: 0.853
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.394
   RMS: 0.507
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 3.413
   RMS: 0.645
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.663
   RMS: 0.559
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.731
   RMS: 0.849
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.550
   RMS: 0.662
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.614
   RMS: 0.789
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.843
   RMS: 0.835
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 0.850
   RMS: 0.655
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.771
   RMS: 0.905
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 3.582
   RMS: 1.013
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 1.413
   RMS: 0.971
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.743
   RMS: 0.822
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 3.693
   RMS: 0.657
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.547
   RMS: 0.692
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.763
   RMS: 0.777
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.640
   RMS: 0.700
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.660
   RMS: 0.663
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 4.059
   RMS: 0.853
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.848
   RMS: 0.829
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.765
   RMS: 0.845
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.748
   RMS: 0.598
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.405
   RMS: 0.734
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.238
   RMS: 0.820
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.816
   RMS: 0.856
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.472
   RMS: 0.534
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.553
   RMS: 0.901
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.660
   RMS: 0.746
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.658
   RMS: 0.842
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.808
   RMS: 0.868
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.615
   RMS: 0.893
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.041
   RMS: 0.625
   Unrecognised keyword: pdb1c5d_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.942
   RMS: 0.705
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2ck0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.910
   RMS: 0.518
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.214
   RMS: 0.877
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.406
   RMS: 0.496
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.435
   RMS: 0.883
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.738
   RMS: 0.713
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.574
   RMS: 0.812
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.956
   RMS: 0.504
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.951
   RMS: 0.677
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.800
   RMS: 0.847
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 3.901
   RMS: 0.936
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.842
   RMS: 0.504
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 1.238
   RMS: 0.989
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 1.183
   RMS: 0.957
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 4.963
   RMS: 1.018
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.518
   RMS: 0.955
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.293
   RMS: 0.987
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.788
   RMS: 0.506
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.839
   RMS: 0.916
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.846
   RMS: 0.784
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.001
   RMS: 1.001
   RMS: 0.754
   RMS: 1.001
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.584
   RMS: 0.912
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.931
   RMS: 0.526
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 0.824
   RMS: 0.933
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 4.128
   RMS: 0.937
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.729
   RMS: 0.881
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.205
   RMS: 1.205
   RMS: 1.048
   RMS: 1.205
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.210
   RMS: 0.541
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.181
   RMS: 1.181
   RMS: 1.831
   RMS: 1.181
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.917
   RMS: 0.567
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.918
   RMS: 5.918
   RMS: 16.342
   RMS: 5.918
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.590
   RMS: 0.804
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.316
   RMS: 0.944
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.698
   RMS: 0.552
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 0.838
   RMS: 1.146
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 1.198
   RMS: 0.547
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.885
   RMS: 0.518
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.851
   RMS: 0.803
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.827
   RMS: 0.790
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.897
   RMS: 0.856
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.633
   RMS: 0.578
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.217
   RMS: 0.499
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.045
   RMS: 0.759
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.490
   RMS: 0.873
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 4.701
   RMS: 0.934
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.558
   RMS: 0.563
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.661
   RMS: 0.917
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.498
   RMS: 0.537
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.867
   RMS: 0.889
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.380
   RMS: 0.881
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.028
   RMS: 0.746
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.835
   RMS: 0.526
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.711
   RMS: 0.671
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.836
   RMS: 0.906
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.618
   RMS: 0.598
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.432
   RMS: 0.538
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.674
   RMS: 0.491
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.954
   RMS: 0.941
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.631
   RMS: 0.854
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 0.720
   RMS: 0.969
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.153
   RMS: 0.888
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.115
   RMS: 0.751
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 1.133
   RMS: 0.906
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.781
   RMS: 0.897
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.272
   RMS: 0.839
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.723
   RMS: 0.911
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.360
   RMS: 0.961
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.853
   RMS: 0.852
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.367
   RMS: 0.645
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 3.296
   RMS: 0.998
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.937
   RMS: 0.594
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.086
   RMS: 0.924
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 4.149
   RMS: 0.917
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.999
   RMS: 1.999
   RMS: 13.784
   RMS: 1.999
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.349
   RMS: 0.535
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.021
   RMS: 0.474
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.989
   RMS: 0.913
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.943
   RMS: 0.551
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.780
   RMS: 0.621
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.824
   RMS: 0.543
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.114
   RMS: 0.529
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.602
   RMS: 0.473
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.797
   RMS: 1.797
   RMS: 1.034
   RMS: 1.797
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 3.747
   RMS: 1.026
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.595
   RMS: 0.904
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 1.017
   RMS: 0.586
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.079
   RMS: 1.079
   RMS: 4.050
   RMS: 1.079
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.628
   RMS: 0.966
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.289
   RMS: 0.994
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 1.136
   RMS: 0.974
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 0.922
   RMS: 0.946
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 3.334
   RMS: 0.950
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.347
   RMS: 0.700
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 1.020
   RMS: 0.530
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.861
   RMS: 0.850
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.183
   RMS: 0.857
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.755
   RMS: 0.677
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.553
   RMS: 0.530
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.675
   RMS: 0.974
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.613
   RMS: 0.948
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.618
   RMS: 0.901
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.807
   RMS: 0.678
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 0.743
   RMS: 0.953
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.297
   RMS: 0.919
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.832
   RMS: 0.527
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.153
   RMS: 0.598
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 1.162
   RMS: 0.559
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.674
   RMS: 0.585
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 4.269
   RMS: 0.942
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.061
   RMS: 1.061
   RMS: 1.126
   RMS: 1.061
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.617
   RMS: 0.526
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.149
   RMS: 1.149
   RMS: 1.681
   RMS: 1.149
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 0.533
   RMS: 0.978
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.739
   RMS: 0.915
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 1.058
   RMS: 0.999
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.606
   RMS: 0.819
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.020
   RMS: 0.829
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 1.562
   RMS: 0.950
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.480
   RMS: 0.492
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.652
   RMS: 0.551
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.292
   RMS: 0.564
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 0.904
   RMS: 0.945
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.532
   RMS: 0.770
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 3.546
   RMS: 0.801
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.766
   RMS: 0.789
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 0.805
   RMS: 0.973
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.808
   RMS: 0.889
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.619
   RMS: 0.630
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.051
   RMS: 0.596
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.006
   RMS: 0.794
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 1.966
   RMS: 1.042
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 3.769
   RMS: 1.042
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.675
   RMS: 0.952
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 0.913
   RMS: 0.941
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.855
   RMS: 0.636
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.709
   RMS: 0.859
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.701
   RMS: 0.481
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.727
   RMS: 0.901
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 0.626
   RMS: 0.588
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 4.259
   RMS: 0.954
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 4.034
   RMS: 0.966
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.064
   RMS: 0.991
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.877
   RMS: 0.864
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.497
   RMS: 0.570
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.442
   RMS: 0.538
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.027
   RMS: 0.536
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 0.615
   RMS: 0.956
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.609
   RMS: 0.482
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.503
   RMS: 0.805
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.787
   RMS: 0.536
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.044
   RMS: 0.863
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.656
   RMS: 0.948
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.088
   RMS: 0.891
   Unrecognised keyword: pdb1nbv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 4.086
   RMS: 0.796
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1n4x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.668
   RMS: 0.879
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.953
   RMS: 0.363
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.290
   RMS: 0.814
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 1.237
   RMS: 0.692
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.830
   RMS: 0.853
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.879
   RMS: 0.391
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 1.694
   RMS: 0.442
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.402
   RMS: 0.716
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.812
   RMS: 0.885
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 1.235
   RMS: 0.479
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.523
   RMS: 0.931
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.295
   RMS: 0.907
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 5.156
   RMS: 1.025
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 0.618
   RMS: 0.908
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.526
   RMS: 0.935
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 1.344
   RMS: 0.332
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 3.703
   RMS: 0.826
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.009
   RMS: 0.745
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.046
   RMS: 0.945
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.152
   RMS: 0.846
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.155
   RMS: 0.412
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.749
   RMS: 0.891
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 3.857
   RMS: 0.898
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.025
   RMS: 0.876
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.195
   RMS: 1.195
   RMS: 1.416
   RMS: 1.195
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 1.307
   RMS: 0.503
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.202
   RMS: 1.202
   RMS: 2.531
   RMS: 1.202
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.916
   RMS: 0.505
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.897
   RMS: 5.897
   RMS: 16.678
   RMS: 5.897
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.520
   RMS: 0.723
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.441
   RMS: 0.915
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.358
   RMS: 0.358
   RMS: 1.242
   RMS: 0.358
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.137
   RMS: 1.137
   RMS: 1.454
   RMS: 1.137
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.544
   RMS: 0.412
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.302
   RMS: 0.407
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.721
   RMS: 0.739
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.760
   RMS: 0.731
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.680
   RMS: 0.807
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.832
   RMS: 0.472
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 1.506
   RMS: 0.360
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.628
   RMS: 0.719
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.815
   RMS: 0.779
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 4.615
   RMS: 0.900
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 0.849
   RMS: 0.430
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.793
   RMS: 0.850
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 0.773
   RMS: 0.418
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.029
   RMS: 0.862
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.512
   RMS: 0.863
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.786
   RMS: 0.702
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.520
   RMS: 0.408
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.864
   RMS: 0.463
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.269
   RMS: 0.905
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.880
   RMS: 0.397
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.768
   RMS: 0.455
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 1.086
   RMS: 0.353
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 3.580
   RMS: 0.925
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.305
   RMS: 0.809
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.059
   RMS: 0.931
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.289
   RMS: 0.884
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.192
   RMS: 0.597
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.318
   RMS: 0.897
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.254
   RMS: 0.841
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.292
   RMS: 0.747
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.062
   RMS: 0.872
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.371
   RMS: 0.922
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.521
   RMS: 0.799
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.316
   RMS: 0.600
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 3.011
   RMS: 0.976
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.355
   RMS: 0.444
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 0.931
   RMS: 0.919
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 4.024
   RMS: 0.893
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.014
   RMS: 2.014
   RMS: 14.175
   RMS: 2.014
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.851
   RMS: 0.450
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 1.242
   RMS: 0.371
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.634
   RMS: 0.885
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.063
   RMS: 0.408
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.818
   RMS: 0.363
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.317
   RMS: 0.317
   RMS: 0.642
   RMS: 0.317
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 1.380
   RMS: 0.525
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.607
   RMS: 0.335
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.791
   RMS: 1.791
   RMS: 1.835
   RMS: 1.791
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 3.459
   RMS: 0.985
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.743
   RMS: 0.911
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.531
   RMS: 0.388
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.066
   RMS: 1.066
   RMS: 4.024
   RMS: 1.066
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.459
   RMS: 0.889
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 1.225
   RMS: 0.962
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.427
   RMS: 0.917
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.159
   RMS: 0.956
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.157
   RMS: 0.886
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 1.585
   RMS: 0.616
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.643
   RMS: 0.392
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.993
   RMS: 0.838
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.475
   RMS: 0.829
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.630
   RMS: 0.484
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.751
   RMS: 0.332
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.105
   RMS: 0.918
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.131
   RMS: 0.868
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.216
   RMS: 0.851
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.568
   RMS: 0.539
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.667
   RMS: 0.947
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.476
   RMS: 0.892
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 0.707
   RMS: 0.361
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.997
   RMS: 0.383
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.947
   RMS: 0.488
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.940
   RMS: 0.486
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 3.917
   RMS: 0.905
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 1.374
   RMS: 1.025
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 0.525
   RMS: 0.323
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.188
   RMS: 1.188
   RMS: 2.301
   RMS: 1.188
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 0.704
   RMS: 0.918
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.916
   RMS: 0.879
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.464
   RMS: 0.976
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.026
   RMS: 0.733
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.955
   RMS: 0.754
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.708
   RMS: 0.984
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.950
   RMS: 0.332
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 0.461
   RMS: 0.338
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 1.473
   RMS: 0.355
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.932
   RMS: 0.885
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.847
   RMS: 0.700
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.289
   RMS: 0.764
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.657
   RMS: 0.750
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.221
   RMS: 0.914
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.888
   RMS: 0.806
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.658
   RMS: 0.580
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 1.235
   RMS: 0.496
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.689
   RMS: 0.667
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.727
   RMS: 1.023
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.053
   RMS: 1.053
   RMS: 3.636
   RMS: 1.053
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 1.804
   RMS: 0.974
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.097
   RMS: 0.896
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 3.487
   RMS: 0.544
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.093
   RMS: 0.829
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.303
   RMS: 0.303
   RMS: 0.515
   RMS: 0.303
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.961
   RMS: 0.828
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.482
   RMS: 0.436
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 4.098
   RMS: 0.952
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 3.925
   RMS: 0.958
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.309
   RMS: 0.923
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.480
   RMS: 0.773
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.670
   RMS: 0.472
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.837
   RMS: 0.382
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 1.355
   RMS: 0.383
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.826
   RMS: 0.905
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.611
   RMS: 0.371
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.968
   RMS: 0.775
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.711
   RMS: 0.487
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.481
   RMS: 0.843
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.047
   RMS: 0.923
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 2.776
   RMS: 0.836
   Unrecognised keyword: pdb2ck0_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.850
   RMS: 0.781
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1cly_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.326
   RMS: 0.765
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.137
   RMS: 0.693
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.577
   RMS: 0.473
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.742
   RMS: 0.465
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.136
   RMS: 0.727
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.922
   RMS: 0.965
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.679
   RMS: 0.768
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.235
   RMS: 0.873
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.739
   RMS: 0.727
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 2.312
   RMS: 1.015
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.827
   RMS: 0.555
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 4.130
   RMS: 0.594
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.313
   RMS: 0.588
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.682
   RMS: 0.551
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.362
   RMS: 0.823
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.429
   RMS: 0.666
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.822
   RMS: 0.897
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.712
   RMS: 0.751
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.797
   RMS: 0.541
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.722
   RMS: 0.853
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.195
   RMS: 0.867
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 3.809
   RMS: 0.852
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.775
   RMS: 0.507
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.782
   RMS: 0.694
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.777
   RMS: 0.718
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.140
   RMS: 0.905
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.068
   RMS: 0.596
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.872
   RMS: 5.872
   RMS: 16.490
   RMS: 5.872
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.452
   RMS: 0.881
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.910
   RMS: 0.543
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.932
   RMS: 0.852
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.609
   RMS: 0.595
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.509
   RMS: 0.778
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.573
   RMS: 0.811
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.231
   RMS: 0.604
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.189
   RMS: 0.605
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.459
   RMS: 0.913
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.328
   RMS: 0.807
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.842
   RMS: 0.885
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.596
   RMS: 0.813
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.321
   RMS: 0.654
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.351
   RMS: 0.351
   RMS: 4.104
   RMS: 0.351
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.073
   RMS: 0.817
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 1.171
   RMS: 0.556
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.059
   RMS: 0.769
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.825
   RMS: 0.609
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.958
   RMS: 0.455
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.312
   RMS: 0.827
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.446
   RMS: 0.812
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.617
   RMS: 0.960
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.808
   RMS: 0.694
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.931
   RMS: 0.753
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.302
   RMS: 0.820
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.644
   RMS: 0.826
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 3.736
   RMS: 0.732
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.859
   RMS: 0.595
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.719
   RMS: 0.605
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.816
   RMS: 0.494
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.930
   RMS: 0.983
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.792
   RMS: 0.559
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.701
   RMS: 0.666
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.886
   RMS: 0.807
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.770
   RMS: 0.921
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.083
   RMS: 0.621
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 1.366
   RMS: 0.532
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.247
   RMS: 0.685
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 2.925
   RMS: 0.934
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.867
   RMS: 0.864
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.244
   RMS: 0.872
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 3.549
   RMS: 0.495
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.045
   RMS: 2.045
   RMS: 13.387
   RMS: 2.045
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.096
   RMS: 0.665
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.345
   RMS: 0.769
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.558
   RMS: 0.511
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 2.029
   RMS: 0.900
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.688
   RMS: 0.991
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.383
   RMS: 0.896
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.689
   RMS: 0.761
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.288
   RMS: 0.792
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.810
   RMS: 1.810
   RMS: 1.194
   RMS: 1.810
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.508
   RMS: 0.662
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.913
   RMS: 0.350
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.771
   RMS: 0.795
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 3.353
   RMS: 0.564
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 3.297
   RMS: 0.567
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.064
   RMS: 0.597
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.655
   RMS: 0.950
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.943
   RMS: 0.441
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 3.061
   RMS: 0.835
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.968
   RMS: 0.793
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.578
   RMS: 0.740
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.012
   RMS: 0.467
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.887
   RMS: 0.486
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.065
   RMS: 1.065
   RMS: 1.201
   RMS: 1.065
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.179
   RMS: 0.815
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.679
   RMS: 0.851
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.735
   RMS: 0.878
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.113
   RMS: 0.865
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 1.742
   RMS: 0.715
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.459
   RMS: 0.558
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.717
   RMS: 0.511
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.137
   RMS: 0.802
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.228
   RMS: 0.797
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.226
   RMS: 0.704
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.921
   RMS: 0.671
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 4.016
   RMS: 0.622
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.871
   RMS: 0.667
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.343
   RMS: 0.867
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.876
   RMS: 0.910
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.110
   RMS: 0.744
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.874
   RMS: 0.552
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.519
   RMS: 0.563
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.746
   RMS: 0.620
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.525
   RMS: 0.717
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.209
   RMS: 0.698
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.249
   RMS: 0.724
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.439
   RMS: 0.785
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 2.142
   RMS: 0.818
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.949
   RMS: 0.541
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.115
   RMS: 0.884
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.482
   RMS: 0.752
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.179
   RMS: 0.873
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.968
   RMS: 0.549
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.053
   RMS: 0.671
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.295
   RMS: 0.734
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.610
   RMS: 0.773
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.307
   RMS: 0.659
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.799
   RMS: 0.756
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.468
   RMS: 0.661
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 0.934
   RMS: 0.362
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.737
   RMS: 0.570
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 3.861
   RMS: 0.774
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.645
   RMS: 0.624
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.622
   RMS: 0.823
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.902
   RMS: 0.592
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.300
   RMS: 0.777
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.717
   RMS: 0.552
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 3.448
   RMS: 0.581
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.723
   RMS: 0.618
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.512
   RMS: 0.806
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.192
   RMS: 0.749
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.105
   RMS: 0.844
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.761
   RMS: 0.810
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.952
   RMS: 0.935
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.471
   RMS: 0.840
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 1.241
   RMS: 0.996
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.113
   RMS: 0.879
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.679
   RMS: 0.474
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.915
   RMS: 0.579
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 2.938
   RMS: 0.953
   Unrecognised keyword: pdb1n4x_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 3.654
   RMS: 0.893
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ct8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 1.492
   RMS: 0.732
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.825
   RMS: 0.573
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.715
   RMS: 0.768
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.291
   RMS: 0.291
   RMS: 0.999
   RMS: 0.291
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 1.095
   RMS: 0.519
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.826
   RMS: 0.694
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 4.001
   RMS: 0.840
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.952
   RMS: 0.426
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.059
   RMS: 0.835
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.271
   RMS: 0.807
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 5.045
   RMS: 0.909
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.444
   RMS: 0.801
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.411
   RMS: 0.844
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.686
   RMS: 0.337
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 3.959
   RMS: 0.729
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.007
   RMS: 0.725
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.796
   RMS: 0.905
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.597
   RMS: 0.740
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 1.085
   RMS: 0.329
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.871
   RMS: 0.821
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 4.269
   RMS: 0.835
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.841
   RMS: 0.783
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 1.276
   RMS: 1.096
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 1.300
   RMS: 0.460
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.093
   RMS: 1.093
   RMS: 1.992
   RMS: 1.093
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.983
   RMS: 0.446
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.878
   RMS: 5.878
   RMS: 16.380
   RMS: 5.878
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.468
   RMS: 0.740
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.500
   RMS: 0.831
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.610
   RMS: 0.318
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.028
   RMS: 1.028
   RMS: 0.967
   RMS: 1.028
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 1.301
   RMS: 0.403
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.931
   RMS: 0.363
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.785
   RMS: 0.673
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.768
   RMS: 0.657
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.978
   RMS: 0.739
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.664
   RMS: 0.400
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 1.286
   RMS: 0.298
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.133
   RMS: 0.670
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.343
   RMS: 0.710
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 4.831
   RMS: 0.789
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.563
   RMS: 0.473
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.775
   RMS: 0.773
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.468
   RMS: 0.343
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.898
   RMS: 0.759
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.515
   RMS: 0.756
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.157
   RMS: 0.638
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.311
   RMS: 0.311
   RMS: 0.758
   RMS: 0.311
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.665
   RMS: 0.463
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.035
   RMS: 0.832
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.785
   RMS: 0.404
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.316
   RMS: 0.394
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.304
   RMS: 0.304
   RMS: 0.412
   RMS: 0.304
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 4.058
   RMS: 0.875
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.603
   RMS: 0.712
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.883
   RMS: 0.822
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.291
   RMS: 0.770
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 1.162
   RMS: 0.639
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.253
   RMS: 0.784
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.890
   RMS: 0.749
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.375
   RMS: 0.707
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.829
   RMS: 0.819
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.525
   RMS: 0.831
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.847
   RMS: 0.709
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 1.474
   RMS: 0.560
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 3.401
   RMS: 0.929
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.957
   RMS: 0.370
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.200
   RMS: 0.867
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 4.266
   RMS: 0.792
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.974
   RMS: 1.974
   RMS: 13.958
   RMS: 1.974
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.469
   RMS: 0.370
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.305
   RMS: 0.305
   RMS: 1.223
   RMS: 0.305
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.104
   RMS: 0.780
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 0.789
   RMS: 0.385
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.539
   RMS: 0.411
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.782
   RMS: 0.367
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.273
   RMS: 0.458
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.272
   RMS: 0.272
   RMS: 0.639
   RMS: 0.272
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.742
   RMS: 1.742
   RMS: 1.191
   RMS: 1.742
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.889
   RMS: 0.896
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.732
   RMS: 0.781
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 0.910
   RMS: 0.387
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 4.166
   RMS: 0.956
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.787
   RMS: 0.783
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.363
   RMS: 0.858
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.315
   RMS: 0.912
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.106
   RMS: 0.829
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.445
   RMS: 0.828
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 1.562
   RMS: 0.484
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.996
   RMS: 0.369
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 2.044
   RMS: 0.741
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.357
   RMS: 0.742
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.747
   RMS: 0.547
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 0.547
   RMS: 0.295
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.788
   RMS: 0.847
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.641
   RMS: 0.834
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.463
   RMS: 0.817
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.699
   RMS: 0.468
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.881
   RMS: 0.852
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.445
   RMS: 0.789
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 0.882
   RMS: 0.333
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.196
   RMS: 0.426
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 1.281
   RMS: 0.419
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 0.785
   RMS: 0.442
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 4.391
   RMS: 0.809
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 1.337
   RMS: 0.909
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 0.585
   RMS: 0.298
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.128
   RMS: 1.128
   RMS: 1.837
   RMS: 1.128
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.638
   RMS: 0.856
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.846
   RMS: 0.758
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.208
   RMS: 0.870
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.651
   RMS: 0.630
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.057
   RMS: 0.677
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.707
   RMS: 0.895
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.278
   RMS: 0.278
   RMS: 0.261
   RMS: 0.278
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.594
   RMS: 0.296
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 1.345
   RMS: 0.312
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.982
   RMS: 0.790
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.532
   RMS: 0.687
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.658
   RMS: 0.706
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.831
   RMS: 0.727
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.827
   RMS: 0.802
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.754
   RMS: 0.734
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.654
   RMS: 0.500
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 1.133
   RMS: 0.453
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 1.004
   RMS: 0.586
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 2.114
   RMS: 0.932
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 3.882
   RMS: 0.955
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.811
   RMS: 0.866
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.987
   RMS: 0.801
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 3.959
   RMS: 0.483
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.805
   RMS: 0.718
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.595
   RMS: 0.318
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.837
   RMS: 0.724
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.689
   RMS: 0.433
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 4.377
   RMS: 0.834
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 4.151
   RMS: 0.841
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.192
   RMS: 0.836
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.925
   RMS: 0.743
   Unrecognised keyword: pdb1cly_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.519
   RMS: 0.431
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.476
   RMS: 0.353
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 1.054
   RMS: 0.345
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.713
   RMS: 0.851
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 0.621
   RMS: 0.380
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.571
   RMS: 0.719
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.853
   RMS: 0.417
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.177
   RMS: 0.737
   Unrecognised keyword: pdb1cly_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.806
   RMS: 0.819
   Unrecognised keyword: pdb1cly_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.187
   RMS: 0.811
   Unrecognised keyword: pdb1cly_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 4.231
   RMS: 0.745
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1cz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.053
   RMS: 0.518
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.825
   RMS: 0.693
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.591
   RMS: 0.702
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.582
   RMS: 0.944
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 1.242
   RMS: 0.664
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.125
   RMS: 0.718
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.865
   RMS: 0.737
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 2.467
   RMS: 1.039
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.534
   RMS: 0.448
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 4.285
   RMS: 0.573
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 1.201
   RMS: 0.386
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.613
   RMS: 0.548
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.870
   RMS: 0.835
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 3.091
   RMS: 0.481
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.691
   RMS: 0.782
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.868
   RMS: 0.720
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.279
   RMS: 0.430
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.809
   RMS: 0.782
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.915
   RMS: 0.665
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.224
   RMS: 0.687
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.813
   RMS: 0.467
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.192
   RMS: 0.757
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.755
   RMS: 0.723
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 2.080
   RMS: 0.847
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.575
   RMS: 0.586
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.825
   RMS: 5.825
   RMS: 16.815
   RMS: 5.825
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.310
   RMS: 0.660
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.625
   RMS: 0.547
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.352
   RMS: 0.810
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.167
   RMS: 0.742
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.824
   RMS: 0.704
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.885
   RMS: 0.760
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.860
   RMS: 0.510
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.873
   RMS: 0.500
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 1.135
   RMS: 0.613
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.413
   RMS: 0.792
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 2.005
   RMS: 0.814
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.985
   RMS: 0.639
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 1.453
   RMS: 0.422
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.718
   RMS: 0.679
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.092
   RMS: 0.843
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 1.156
   RMS: 0.423
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.168
   RMS: 0.709
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.814
   RMS: 0.485
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.618
   RMS: 0.722
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.787
   RMS: 0.657
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.184
   RMS: 0.733
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.695
   RMS: 0.932
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.927
   RMS: 0.602
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.028
   RMS: 0.780
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.365
   RMS: 0.752
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.833
   RMS: 0.776
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 3.014
   RMS: 0.555
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 1.373
   RMS: 0.449
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 0.843
   RMS: 0.390
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.547
   RMS: 0.432
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 0.505
   RMS: 0.975
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 0.611
   RMS: 0.588
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.946
   RMS: 0.367
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.453
   RMS: 0.602
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.834
   RMS: 0.686
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.633
   RMS: 0.481
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.070
   RMS: 0.455
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.463
   RMS: 0.668
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 2.615
   RMS: 0.831
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 1.582
   RMS: 0.732
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.637
   RMS: 0.841
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 3.217
   RMS: 0.504
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.073
   RMS: 2.073
   RMS: 13.601
   RMS: 2.073
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.232
   RMS: 0.678
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.385
   RMS: 0.757
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.329
   RMS: 0.474
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 2.095
   RMS: 0.790
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.566
   RMS: 0.890
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.961
   RMS: 0.808
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.890
   RMS: 0.722
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.025
   RMS: 0.779
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.643
   RMS: 1.643
   RMS: 1.825
   RMS: 1.643
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 3.038
   RMS: 0.534
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.754
   RMS: 0.598
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.456
   RMS: 0.777
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 3.233
   RMS: 0.579
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 2.784
   RMS: 0.501
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.212
   RMS: 0.540
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.764
   RMS: 0.671
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.951
   RMS: 0.705
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 2.668
   RMS: 0.648
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.842
   RMS: 0.734
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.083
   RMS: 0.752
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.998
   RMS: 0.457
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.028
   RMS: 0.624
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 0.859
   RMS: 0.980
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.173
   RMS: 0.726
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.958
   RMS: 0.744
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.182
   RMS: 0.709
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.560
   RMS: 0.745
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.637
   RMS: 0.667
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.169
   RMS: 0.504
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.576
   RMS: 0.427
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.849
   RMS: 0.751
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.504
   RMS: 0.775
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.599
   RMS: 0.556
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.976
   RMS: 0.584
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 3.304
   RMS: 0.559
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.730
   RMS: 0.555
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.210
   RMS: 0.781
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.731
   RMS: 0.945
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.966
   RMS: 0.528
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.729
   RMS: 0.427
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.889
   RMS: 0.541
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.981
   RMS: 0.396
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 1.008
   RMS: 0.466
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.862
   RMS: 0.618
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.345
   RMS: 0.707
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.211
   RMS: 0.719
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 2.219
   RMS: 0.821
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.555
   RMS: 0.399
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.096
   RMS: 0.647
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 2.978
   RMS: 0.700
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.828
   RMS: 0.684
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.322
   RMS: 0.610
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.819
   RMS: 0.392
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 1.212
   RMS: 0.701
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.617
   RMS: 0.762
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.749
   RMS: 0.504
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.980
   RMS: 0.732
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.052
   RMS: 0.687
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.725
   RMS: 0.669
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.681
   RMS: 0.400
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 3.168
   RMS: 0.676
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.881
   RMS: 0.453
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.383
   RMS: 0.781
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.925
   RMS: 0.424
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.119
   RMS: 0.601
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 3.315
   RMS: 0.437
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 3.160
   RMS: 0.374
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.603
   RMS: 0.527
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 1.246
   RMS: 0.573
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.057
   RMS: 0.660
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.094
   RMS: 0.800
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.863
   RMS: 0.806
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.878
   RMS: 0.688
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.244
   RMS: 0.831
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.445
   RMS: 0.833
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.746
   RMS: 0.817
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 0.936
   RMS: 0.430
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 1.184
   RMS: 0.537
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 2.613
   RMS: 0.751
   Unrecognised keyword: pdb1ct8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.186
   RMS: 0.814
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dbb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.989
   RMS: 0.524
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.804
   RMS: 0.556
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.693
   RMS: 0.801
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.394
   RMS: 0.618
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 3.555
   RMS: 0.699
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.438
   RMS: 0.550
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.829
   RMS: 0.888
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.776
   RMS: 0.550
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 4.507
   RMS: 0.660
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.802
   RMS: 0.571
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 0.757
   RMS: 0.588
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.048
   RMS: 0.663
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.609
   RMS: 0.569
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.614
   RMS: 0.715
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.399
   RMS: 0.684
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.345
   RMS: 0.534
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.613
   RMS: 0.635
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.856
   RMS: 0.664
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.946
   RMS: 0.677
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.445
   RMS: 0.506
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.734
   RMS: 0.789
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.842
   RMS: 0.569
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.450
   RMS: 0.914
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 0.701
   RMS: 0.418
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.835
   RMS: 5.835
   RMS: 16.373
   RMS: 5.835
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.960
   RMS: 0.659
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.903
   RMS: 0.551
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.618
   RMS: 0.671
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.439
   RMS: 0.713
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.600
   RMS: 0.540
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.365
   RMS: 0.572
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.822
   RMS: 0.518
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.768
   RMS: 0.505
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 1.147
   RMS: 0.690
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.981
   RMS: 0.631
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 1.438
   RMS: 0.684
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 1.217
   RMS: 0.595
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.830
   RMS: 0.516
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 4.354
   RMS: 0.492
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.544
   RMS: 0.696
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.862
   RMS: 0.537
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.616
   RMS: 0.573
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.445
   RMS: 0.573
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.946
   RMS: 0.500
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 1.065
   RMS: 0.584
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.041
   RMS: 0.600
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.204
   RMS: 0.809
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.611
   RMS: 0.636
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.581
   RMS: 0.612
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.811
   RMS: 0.620
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.147
   RMS: 0.617
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 3.799
   RMS: 0.604
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.409
   RMS: 0.521
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.437
   RMS: 0.547
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.741
   RMS: 0.479
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.678
   RMS: 0.865
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.704
   RMS: 0.584
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.378
   RMS: 0.518
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.827
   RMS: 0.586
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.428
   RMS: 0.710
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.030
   RMS: 0.571
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.943
   RMS: 0.511
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 1.100
   RMS: 0.526
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.104
   RMS: 0.791
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 1.411
   RMS: 0.653
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.001
   RMS: 0.781
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 3.800
   RMS: 0.537
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.002
   RMS: 2.002
   RMS: 13.530
   RMS: 2.002
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.627
   RMS: 0.452
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.032
   RMS: 0.600
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.549
   RMS: 0.556
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.532
   RMS: 0.697
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.161
   RMS: 0.776
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.904
   RMS: 0.684
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.749
   RMS: 0.581
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.823
   RMS: 0.589
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.741
   RMS: 1.741
   RMS: 0.987
   RMS: 1.741
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 3.629
   RMS: 0.641
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 1.063
   RMS: 0.436
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.298
   RMS: 0.624
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.670
   RMS: 0.623
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.417
   RMS: 0.583
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.924
   RMS: 0.621
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.646
   RMS: 0.777
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.670
   RMS: 0.597
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.162
   RMS: 0.666
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 1.014
   RMS: 0.580
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 1.195
   RMS: 0.548
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.333
   RMS: 0.504
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.757
   RMS: 0.537
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.740
   RMS: 0.848
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.770
   RMS: 0.627
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.428
   RMS: 0.715
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.414
   RMS: 0.706
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.735
   RMS: 0.720
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 1.254
   RMS: 0.547
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.998
   RMS: 0.559
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.771
   RMS: 0.518
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.818
   RMS: 0.576
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.935
   RMS: 0.575
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.000
   RMS: 0.482
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.633
   RMS: 0.448
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 4.092
   RMS: 0.619
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.782
   RMS: 0.632
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.878
   RMS: 0.673
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.174
   RMS: 0.886
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.671
   RMS: 0.593
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.530
   RMS: 0.516
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.562
   RMS: 0.573
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.251
   RMS: 0.481
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 1.081
   RMS: 0.572
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.180
   RMS: 0.621
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.705
   RMS: 0.546
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.955
   RMS: 0.570
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.693
   RMS: 0.645
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.636
   RMS: 0.536
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.583
   RMS: 0.639
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 3.502
   RMS: 0.605
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.823
   RMS: 0.651
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.718
   RMS: 0.589
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.632
   RMS: 0.504
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.869
   RMS: 0.520
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.498
   RMS: 0.557
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.980
   RMS: 0.522
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.750
   RMS: 0.720
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.577
   RMS: 0.687
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.136
   RMS: 0.510
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.531
   RMS: 0.541
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 3.833
   RMS: 0.545
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.299
   RMS: 0.469
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 1.126
   RMS: 0.622
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.495
   RMS: 0.485
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.888
   RMS: 0.543
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 3.944
   RMS: 0.549
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.705
   RMS: 0.552
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.628
   RMS: 0.584
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.336
   RMS: 0.620
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.718
   RMS: 0.508
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.607
   RMS: 0.666
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.592
   RMS: 0.654
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.574
   RMS: 0.719
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.973
   RMS: 0.666
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.880
   RMS: 0.778
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.761
   RMS: 0.689
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.551
   RMS: 0.477
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 1.711
   RMS: 0.590
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 3.027
   RMS: 0.723
   Unrecognised keyword: pdb1cz8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 3.858
   RMS: 0.731
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.087
   RMS: 0.742
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 1.311
   RMS: 0.959
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.167
   RMS: 0.774
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.000
   RMS: 0.854
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.911
   RMS: 0.699
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 2.739
   RMS: 1.082
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.747
   RMS: 0.657
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 3.869
   RMS: 0.684
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.553
   RMS: 0.662
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.423
   RMS: 0.667
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.959
   RMS: 0.850
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.090
   RMS: 0.718
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.910
   RMS: 0.845
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.014
   RMS: 0.789
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.307
   RMS: 0.624
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.934
   RMS: 0.838
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.373
   RMS: 0.858
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.360
   RMS: 0.847
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.922
   RMS: 0.561
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.054
   RMS: 0.808
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.831
   RMS: 0.700
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.476
   RMS: 0.942
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.041
   RMS: 0.624
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.834
   RMS: 5.834
   RMS: 16.550
   RMS: 5.834
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.724
   RMS: 0.853
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.526
   RMS: 0.603
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.450
   RMS: 0.831
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.914
   RMS: 0.749
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.508
   RMS: 0.759
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.830
   RMS: 0.776
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.368
   RMS: 0.645
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.342
   RMS: 0.641
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.602
   RMS: 0.874
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.706
   RMS: 0.834
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 2.120
   RMS: 0.853
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.529
   RMS: 0.795
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.681
   RMS: 0.685
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 3.605
   RMS: 0.518
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.343
   RMS: 0.814
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.469
   RMS: 0.635
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.429
   RMS: 0.757
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.028
   RMS: 0.662
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.543
   RMS: 0.477
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.315
   RMS: 0.789
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.649
   RMS: 0.807
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 2.025
   RMS: 0.977
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.826
   RMS: 0.678
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.157
   RMS: 0.779
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.660
   RMS: 0.812
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 2.072
   RMS: 0.797
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.300
   RMS: 0.754
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.345
   RMS: 0.670
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.920
   RMS: 0.683
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.588
   RMS: 0.564
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 0.870
   RMS: 0.930
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.639
   RMS: 0.622
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.894
   RMS: 0.693
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.624
   RMS: 0.781
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.966
   RMS: 0.887
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.711
   RMS: 0.691
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 1.510
   RMS: 0.595
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.904
   RMS: 0.699
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 2.764
   RMS: 0.907
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 2.078
   RMS: 0.860
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.139
   RMS: 0.879
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.136
   RMS: 0.617
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.004
   RMS: 2.004
   RMS: 13.062
   RMS: 2.004
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.433
   RMS: 0.661
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.477
   RMS: 0.745
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.036
   RMS: 0.633
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 2.426
   RMS: 0.904
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.972
   RMS: 0.964
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.493
   RMS: 0.863
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.751
   RMS: 0.726
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.458
   RMS: 0.773
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.766
   RMS: 1.766
   RMS: 1.498
   RMS: 1.766
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.196
   RMS: 0.752
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.377
   RMS: 0.459
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.957
   RMS: 0.817
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.035
   RMS: 0.678
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 2.841
   RMS: 0.660
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.822
   RMS: 0.690
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.517
   RMS: 0.911
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.989
   RMS: 0.504
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 2.775
   RMS: 0.846
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.605
   RMS: 0.777
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.673
   RMS: 0.754
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.522
   RMS: 0.571
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.851
   RMS: 0.524
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 1.344
   RMS: 1.026
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.498
   RMS: 0.801
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.007
   RMS: 0.873
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.215
   RMS: 0.883
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.667
   RMS: 0.830
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 2.053
   RMS: 0.742
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 1.577
   RMS: 0.646
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.390
   RMS: 0.630
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.278
   RMS: 0.778
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.059
   RMS: 0.795
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.056
   RMS: 0.700
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.183
   RMS: 0.686
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.527
   RMS: 0.692
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.630
   RMS: 0.753
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.635
   RMS: 0.857
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.043
   RMS: 0.893
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.268
   RMS: 0.771
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.997
   RMS: 0.609
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.670
   RMS: 0.645
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.086
   RMS: 0.638
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.436
   RMS: 0.711
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.670
   RMS: 0.679
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.583
   RMS: 0.727
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.679
   RMS: 0.769
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 2.453
   RMS: 0.830
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.952
   RMS: 0.647
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.356
   RMS: 0.830
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.199
   RMS: 0.768
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.289
   RMS: 0.831
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.445
   RMS: 0.677
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.214
   RMS: 0.683
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 1.573
   RMS: 0.692
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.688
   RMS: 0.768
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.351
   RMS: 0.697
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.260
   RMS: 0.763
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.096
   RMS: 0.752
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.353
   RMS: 0.492
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.828
   RMS: 0.654
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 3.497
   RMS: 0.735
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.916
   RMS: 0.636
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.862
   RMS: 0.802
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.036
   RMS: 0.647
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.547
   RMS: 0.759
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 3.279
   RMS: 0.641
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 3.075
   RMS: 0.634
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.635
   RMS: 0.694
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.036
   RMS: 0.776
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.419
   RMS: 0.728
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.366
   RMS: 0.821
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.854
   RMS: 0.815
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.156
   RMS: 0.917
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.664
   RMS: 0.809
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.629
   RMS: 0.955
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.207
   RMS: 0.875
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.660
   RMS: 0.541
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.757
   RMS: 0.670
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 2.853
   RMS: 0.923
   Unrecognised keyword: pdb1dbb_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 3.228
   RMS: 0.864
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1dlf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.371
   RMS: 0.564
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 1.032
   RMS: 0.702
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.436
   RMS: 0.843
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.674
   RMS: 0.367
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.958
   RMS: 0.855
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.582
   RMS: 0.769
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 4.562
   RMS: 0.862
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.676
   RMS: 0.779
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.771
   RMS: 0.799
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 1.466
   RMS: 0.379
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.377
   RMS: 0.733
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.507
   RMS: 0.671
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.602
   RMS: 0.882
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.939
   RMS: 0.728
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 0.731
   RMS: 0.331
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.667
   RMS: 0.804
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 3.557
   RMS: 0.826
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.471
   RMS: 0.740
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.081
   RMS: 1.057
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.716
   RMS: 0.414
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.102
   RMS: 1.102
   RMS: 2.052
   RMS: 1.102
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.276
   RMS: 0.408
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.870
   RMS: 5.870
   RMS: 16.726
   RMS: 5.870
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.816
   RMS: 0.718
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.738
   RMS: 0.791
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.031
   RMS: 0.380
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 0.919
   RMS: 0.989
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.818
   RMS: 0.393
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 0.685
   RMS: 0.380
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.515
   RMS: 0.627
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.544
   RMS: 0.621
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.770
   RMS: 0.742
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 1.007
   RMS: 0.431
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 1.682
   RMS: 0.372
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.574
   RMS: 0.656
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.933
   RMS: 0.690
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 4.102
   RMS: 0.750
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.684
   RMS: 0.446
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.841
   RMS: 0.743
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.736
   RMS: 0.394
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.617
   RMS: 0.743
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.716
   RMS: 0.726
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.605
   RMS: 0.627
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.691
   RMS: 0.344
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.280
   RMS: 0.515
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.711
   RMS: 0.819
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.607
   RMS: 0.443
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.888
   RMS: 0.388
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 1.323
   RMS: 0.361
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 3.348
   RMS: 0.813
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 1.042
   RMS: 0.680
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.596
   RMS: 0.793
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.534
   RMS: 0.730
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.551
   RMS: 0.665
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.548
   RMS: 0.760
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.649
   RMS: 0.729
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.557
   RMS: 0.704
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.513
   RMS: 0.774
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.684
   RMS: 0.802
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.612
   RMS: 0.672
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.567
   RMS: 0.507
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 2.882
   RMS: 0.917
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 1.148
   RMS: 0.418
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.408
   RMS: 0.803
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 3.584
   RMS: 0.751
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.996
   RMS: 1.996
   RMS: 13.727
   RMS: 1.996
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.785
   RMS: 0.419
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 1.170
   RMS: 0.323
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.166
   RMS: 0.748
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 1.595
   RMS: 0.440
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.096
   RMS: 0.473
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.571
   RMS: 0.416
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.775
   RMS: 0.443
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.307
   RMS: 0.307
   RMS: 0.563
   RMS: 0.307
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.780
   RMS: 1.780
   RMS: 1.495
   RMS: 1.780
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.295
   RMS: 0.863
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.984
   RMS: 0.753
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 1.009
   RMS: 0.440
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 3.570
   RMS: 0.915
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.118
   RMS: 0.790
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.501
   RMS: 0.795
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.782
   RMS: 0.886
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.675
   RMS: 0.819
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 2.931
   RMS: 0.830
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.915
   RMS: 0.505
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 0.687
   RMS: 0.320
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.331
   RMS: 0.677
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.932
   RMS: 0.724
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.465
   RMS: 0.581
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 0.751
   RMS: 0.338
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.681
   RMS: 0.861
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.838
   RMS: 0.838
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.190
   RMS: 0.806
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 1.146
   RMS: 0.487
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.820
   RMS: 0.815
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.761
   RMS: 0.733
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 0.465
   RMS: 0.386
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.325
   RMS: 0.439
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 0.405
   RMS: 0.390
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.633
   RMS: 0.419
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.639
   RMS: 0.752
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.753
   RMS: 0.879
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.782
   RMS: 0.350
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 1.750
   RMS: 1.112
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.489
   RMS: 0.822
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.350
   RMS: 0.722
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.864
   RMS: 0.843
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.628
   RMS: 0.623
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.695
   RMS: 0.650
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.001
   RMS: 0.854
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.293
   RMS: 0.293
   RMS: 0.877
   RMS: 0.293
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 0.762
   RMS: 0.340
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 1.863
   RMS: 0.376
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.236
   RMS: 0.757
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.689
   RMS: 0.677
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.159
   RMS: 0.674
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.383
   RMS: 0.684
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.121
   RMS: 0.760
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.524
   RMS: 0.716
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.796
   RMS: 0.501
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.595
   RMS: 0.464
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.399
   RMS: 0.574
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.167
   RMS: 0.911
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.308
   RMS: 0.899
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.048
   RMS: 0.820
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.420
   RMS: 0.760
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 3.378
   RMS: 0.466
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.574
   RMS: 0.698
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.924
   RMS: 0.329
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.528
   RMS: 0.712
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.690
   RMS: 0.447
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.674
   RMS: 0.791
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.507
   RMS: 0.809
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.629
   RMS: 0.808
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.033
   RMS: 0.753
   Unrecognised keyword: pdb1dee_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.580
   RMS: 0.412
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.650
   RMS: 0.368
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.627
   RMS: 0.343
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.467
   RMS: 0.825
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 0.750
   RMS: 0.320
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.004
   RMS: 0.729
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.302
   RMS: 0.452
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.786
   RMS: 0.684
   Unrecognised keyword: pdb1dee_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.149
   RMS: 0.797
   Unrecognised keyword: pdb1dee_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 2.793
   RMS: 0.821
   Unrecognised keyword: pdb1dee_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.519
   RMS: 0.694
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1dn0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.587
   RMS: 0.827
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 3.831
   RMS: 0.994
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.867
   RMS: 0.625
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.835
   RMS: 1.004
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 1.304
   RMS: 1.024
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.148
   RMS: 1.148
   RMS: 4.620
   RMS: 1.148
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 1.223
   RMS: 1.024
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 1.186
   RMS: 1.041
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 1.205
   RMS: 0.495
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 3.809
   RMS: 0.975
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.132
   RMS: 0.903
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 0.997
   RMS: 1.050
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.753
   RMS: 0.943
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.090
   RMS: 0.531
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 1.313
   RMS: 1.026
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.028
   RMS: 1.028
   RMS: 4.199
   RMS: 1.028
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 0.994
   RMS: 1.013
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.290
   RMS: 1.290
   RMS: 1.045
   RMS: 1.290
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.423
   RMS: 0.633
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.337
   RMS: 1.337
   RMS: 1.216
   RMS: 1.337
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.215
   RMS: 0.650
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.837
   RMS: 5.837
   RMS: 15.878
   RMS: 5.837
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.384
   RMS: 0.872
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 1.328
   RMS: 1.036
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.955
   RMS: 0.526
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.240
   RMS: 1.240
   RMS: 0.701
   RMS: 1.240
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 1.052
   RMS: 0.511
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.898
   RMS: 0.554
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.334
   RMS: 0.878
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.268
   RMS: 0.879
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 1.631
   RMS: 1.000
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.343
   RMS: 0.614
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.422
   RMS: 0.450
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.697
   RMS: 0.872
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.214
   RMS: 0.941
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 4.552
   RMS: 1.023
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.969
   RMS: 0.521
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.249
   RMS: 0.991
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.096
   RMS: 0.555
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.980
   RMS: 0.955
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.409
   RMS: 0.978
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.553
   RMS: 0.882
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.588
   RMS: 0.552
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.444
   RMS: 0.574
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 0.894
   RMS: 1.021
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.095
   RMS: 0.515
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.168
   RMS: 0.598
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 1.347
   RMS: 0.500
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 4.087
   RMS: 1.063
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.604
   RMS: 0.942
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 0.920
   RMS: 1.054
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.251
   RMS: 1.023
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.163
   RMS: 0.654
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 1.228
   RMS: 0.999
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 0.866
   RMS: 0.990
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.369
   RMS: 0.861
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 0.988
   RMS: 0.998
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 1.505
   RMS: 1.037
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.474
   RMS: 0.902
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.568
   RMS: 0.734
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 3.425
   RMS: 1.054
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.775
   RMS: 0.549
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 1.534
   RMS: 1.025
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 4.038
   RMS: 0.969
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.901
   RMS: 1.901
   RMS: 13.216
   RMS: 1.901
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.973
   RMS: 0.604
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 1.195
   RMS: 0.491
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 0.639
   RMS: 1.002
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 1.703
   RMS: 0.584
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 1.465
   RMS: 0.485
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 1.356
   RMS: 0.409
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.247
   RMS: 0.674
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.253
   RMS: 0.510
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.837
   RMS: 1.837
   RMS: 0.665
   RMS: 1.837
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.117
   RMS: 1.117
   RMS: 3.896
   RMS: 1.117
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 1.482
   RMS: 1.013
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.726
   RMS: 0.498
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.165
   RMS: 1.165
   RMS: 3.886
   RMS: 1.165
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 3.583
   RMS: 0.979
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 1.432
   RMS: 1.075
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 1.004
   RMS: 1.062
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.053
   RMS: 1.053
   RMS: 1.140
   RMS: 1.053
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 3.339
   RMS: 0.993
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 1.325
   RMS: 0.694
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.705
   RMS: 0.564
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.693
   RMS: 0.947
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 1.112
   RMS: 0.963
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.262
   RMS: 0.541
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.208
   RMS: 0.471
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 0.926
   RMS: 1.031
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 0.911
   RMS: 0.986
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 0.973
   RMS: 0.976
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.630
   RMS: 0.665
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.071
   RMS: 1.071
   RMS: 1.288
   RMS: 1.071
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 1.206
   RMS: 1.019
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 1.404
   RMS: 0.489
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 1.471
   RMS: 0.424
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.552
   RMS: 0.617
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.121
   RMS: 0.660
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 4.371
   RMS: 1.020
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.134
   RMS: 1.134
   RMS: 1.081
   RMS: 1.134
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.330
   RMS: 0.473
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.293
   RMS: 1.293
   RMS: 1.003
   RMS: 1.293
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 1.113
   RMS: 1.075
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 1.101
   RMS: 1.008
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.094
   RMS: 1.094
   RMS: 0.904
   RMS: 1.094
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.859
   RMS: 0.877
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.389
   RMS: 0.904
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 1.465
   RMS: 1.081
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.002
   RMS: 0.467
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 1.386
   RMS: 0.461
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 1.656
   RMS: 0.493
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 1.207
   RMS: 1.003
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.972
   RMS: 0.852
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.707
   RMS: 0.965
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.366
   RMS: 0.915
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 0.944
   RMS: 1.031
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 1.132
   RMS: 0.928
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.287
   RMS: 0.666
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.080
   RMS: 0.588
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.563
   RMS: 0.814
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.165
   RMS: 1.165
   RMS: 2.204
   RMS: 1.165
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.173
   RMS: 1.173
   RMS: 3.746
   RMS: 1.173
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.066
   RMS: 1.066
   RMS: 1.556
   RMS: 1.066
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 1.147
   RMS: 1.008
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 4.074
   RMS: 0.747
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.904
   RMS: 0.974
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 1.481
   RMS: 0.486
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.033
   RMS: 0.945
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.374
   RMS: 0.608
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 4.192
   RMS: 1.052
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.069
   RMS: 1.069
   RMS: 3.933
   RMS: 1.069
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 1.046
   RMS: 1.011
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.622
   RMS: 0.921
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 1.156
   RMS: 0.628
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.991
   RMS: 0.491
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.121
   RMS: 0.510
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.044
   RMS: 1.044
   RMS: 1.111
   RMS: 1.044
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 1.350
   RMS: 0.521
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.217
   RMS: 0.933
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 1.317
   RMS: 0.632
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 0.904
   RMS: 0.959
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.066
   RMS: 1.066
   RMS: 2.175
   RMS: 1.066
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 3.324
   RMS: 0.976
   Unrecognised keyword: pdb1dlf_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 4.139
   RMS: 0.931
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1dqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 3.609
   RMS: 0.478
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.547
   RMS: 0.723
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 1.728
   RMS: 1.020
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.914
   RMS: 0.751
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 4.543
   RMS: 0.823
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.954
   RMS: 0.740
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.910
   RMS: 0.791
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.922
   RMS: 0.744
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 3.647
   RMS: 0.596
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.795
   RMS: 0.569
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.594
   RMS: 0.530
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.412
   RMS: 0.698
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.686
   RMS: 0.759
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.891
   RMS: 0.510
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 4.003
   RMS: 0.509
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.699
   RMS: 0.695
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 0.922
   RMS: 0.971
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.034
   RMS: 0.722
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 1.315
   RMS: 0.995
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.905
   RMS: 0.664
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.828
   RMS: 5.828
   RMS: 16.278
   RMS: 5.828
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 1.073
   RMS: 0.557
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.145
   RMS: 0.733
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.440
   RMS: 0.753
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.547
   RMS: 0.871
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.793
   RMS: 0.654
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.538
   RMS: 0.653
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.960
   RMS: 0.601
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.905
   RMS: 0.593
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.231
   RMS: 0.614
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.939
   RMS: 0.719
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.542
   RMS: 0.736
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.428
   RMS: 0.601
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.970
   RMS: 0.558
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 4.424
   RMS: 0.751
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.731
   RMS: 0.779
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.866
   RMS: 0.685
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.715
   RMS: 0.686
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.675
   RMS: 0.800
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.199
   RMS: 0.771
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 1.181
   RMS: 0.582
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 1.224
   RMS: 0.690
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.122
   RMS: 0.851
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.757
   RMS: 0.742
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.843
   RMS: 0.670
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.829
   RMS: 0.724
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.154
   RMS: 0.734
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.863
   RMS: 0.717
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.343
   RMS: 0.634
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.584
   RMS: 0.738
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.994
   RMS: 0.664
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.874
   RMS: 0.852
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.948
   RMS: 0.788
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.595
   RMS: 0.628
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.083
   RMS: 0.467
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.621
   RMS: 0.628
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.302
   RMS: 0.805
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.196
   RMS: 0.648
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 1.285
   RMS: 0.679
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.158
   RMS: 0.710
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.519
   RMS: 0.755
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.181
   RMS: 0.753
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.880
   RMS: 0.769
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.028
   RMS: 2.028
   RMS: 13.647
   RMS: 2.028
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.663
   RMS: 0.688
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.225
   RMS: 0.741
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.436
   RMS: 0.744
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.521
   RMS: 0.765
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.219
   RMS: 0.802
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.048
   RMS: 0.754
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.936
   RMS: 0.704
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.916
   RMS: 0.749
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.677
   RMS: 1.677
   RMS: 1.007
   RMS: 1.677
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.684
   RMS: 0.782
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.297
   RMS: 0.757
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.475
   RMS: 0.728
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.733
   RMS: 0.827
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.463
   RMS: 0.737
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.101
   RMS: 0.787
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.824
   RMS: 0.645
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.003
   RMS: 0.876
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 3.180
   RMS: 0.474
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.178
   RMS: 0.708
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.304
   RMS: 0.709
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.518
   RMS: 0.718
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.073
   RMS: 0.756
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.920
   RMS: 0.813
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.790
   RMS: 0.689
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.530
   RMS: 0.541
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.486
   RMS: 0.448
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.619
   RMS: 0.564
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 1.380
   RMS: 0.644
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.110
   RMS: 0.748
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.991
   RMS: 0.736
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.038
   RMS: 0.709
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.186
   RMS: 0.661
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 1.271
   RMS: 0.591
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.701
   RMS: 0.604
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 4.186
   RMS: 0.762
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.945
   RMS: 0.797
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.961
   RMS: 0.730
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.180
   RMS: 1.057
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.818
   RMS: 0.645
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.746
   RMS: 0.720
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.622
   RMS: 0.779
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.477
   RMS: 0.536
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.249
   RMS: 0.555
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.419
   RMS: 0.705
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.746
   RMS: 0.658
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.041
   RMS: 0.697
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.716
   RMS: 0.746
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.864
   RMS: 0.741
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.734
   RMS: 0.515
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.523
   RMS: 0.622
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.980
   RMS: 0.558
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.521
   RMS: 0.717
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.752
   RMS: 0.535
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.960
   RMS: 0.686
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.737
   RMS: 0.710
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.134
   RMS: 0.562
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 2.003
   RMS: 0.787
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 3.612
   RMS: 0.859
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.350
   RMS: 0.785
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.794
   RMS: 0.695
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.878
   RMS: 0.663
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.534
   RMS: 0.561
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 1.181
   RMS: 0.684
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.830
   RMS: 0.585
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.005
   RMS: 0.604
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 4.027
   RMS: 0.763
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 3.767
   RMS: 0.750
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.755
   RMS: 0.728
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.298
   RMS: 0.522
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.811
   RMS: 0.642
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.665
   RMS: 0.752
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.785
   RMS: 0.769
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.715
   RMS: 0.602
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.081
   RMS: 0.783
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.867
   RMS: 0.788
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.937
   RMS: 0.791
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.784
   RMS: 0.734
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.895
   RMS: 0.804
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.054
   RMS: 0.573
   Unrecognised keyword: pdb1dn0_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 3.948
   RMS: 0.651
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1dql_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 3.457
   RMS: 0.823
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 4.768
   RMS: 1.113
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 3.109
   RMS: 0.836
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 2.128
   RMS: 0.814
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 3.866
   RMS: 0.806
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.093
   RMS: 0.868
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 4.014
   RMS: 0.902
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 1.239
   RMS: 0.701
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.343
   RMS: 0.573
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 3.484
   RMS: 0.466
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 3.707
   RMS: 0.775
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 3.244
   RMS: 0.874
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 3.515
   RMS: 0.355
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.280
   RMS: 0.280
   RMS: 1.941
   RMS: 0.280
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 3.447
   RMS: 0.751
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 3.495
   RMS: 0.919
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 3.011
   RMS: 0.878
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 3.498
   RMS: 1.005
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.479
   RMS: 0.784
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.837
   RMS: 5.837
   RMS: 17.528
   RMS: 5.837
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 3.918
   RMS: 0.492
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.130
   RMS: 0.828
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 3.694
   RMS: 0.904
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 3.486
   RMS: 0.864
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.210
   RMS: 0.838
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.417
   RMS: 0.794
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 3.685
   RMS: 0.708
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.697
   RMS: 0.710
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 3.577
   RMS: 0.526
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.697
   RMS: 0.838
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 4.539
   RMS: 0.880
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 3.639
   RMS: 0.560
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 3.948
   RMS: 0.702
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.800
   RMS: 0.857
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 3.794
   RMS: 0.987
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.581
   RMS: 0.802
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 3.680
   RMS: 0.780
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 3.491
   RMS: 0.897
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 3.172
   RMS: 0.911
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.345
   RMS: 0.510
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 3.723
   RMS: 0.826
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 4.011
   RMS: 0.994
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 3.426
   RMS: 0.797
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 3.486
   RMS: 0.880
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.863
   RMS: 0.831
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 4.293
   RMS: 0.863
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 2.254
   RMS: 0.766
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.834
   RMS: 0.726
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.380
   RMS: 0.748
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.187
   RMS: 0.733
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.076
   RMS: 1.076
   RMS: 3.401
   RMS: 1.076
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 3.222
   RMS: 0.806
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 3.523
   RMS: 0.664
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.125
   RMS: 0.620
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 3.475
   RMS: 0.517
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 3.100
   RMS: 0.849
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 3.701
   RMS: 0.762
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 3.213
   RMS: 0.713
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.337
   RMS: 0.571
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 4.077
   RMS: 0.859
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.315
   RMS: 0.721
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.086
   RMS: 0.840
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.085
   RMS: 2.085
   RMS: 13.929
   RMS: 2.085
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 3.709
   RMS: 0.836
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.914
   RMS: 0.861
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.463
   RMS: 0.828
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 4.471
   RMS: 0.887
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 4.208
   RMS: 0.972
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.786
   RMS: 0.935
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.099
   RMS: 0.794
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.691
   RMS: 0.890
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.723
   RMS: 1.723
   RMS: 4.018
   RMS: 1.723
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.695
   RMS: 0.794
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 2.967
   RMS: 0.843
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 4.010
   RMS: 0.925
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.656
   RMS: 0.818
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 2.019
   RMS: 0.830
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.211
   RMS: 0.854
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 3.192
   RMS: 0.652
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 3.560
   RMS: 0.927
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 1.680
   RMS: 0.375
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.126
   RMS: 0.833
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 3.661
   RMS: 0.804
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 2.715
   RMS: 0.830
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 3.541
   RMS: 0.805
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 3.638
   RMS: 0.985
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 3.647
   RMS: 0.830
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 3.448
   RMS: 0.410
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.300
   RMS: 0.300
   RMS: 3.554
   RMS: 0.300
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 3.935
   RMS: 0.393
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 4.129
   RMS: 0.797
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 3.859
   RMS: 0.804
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 3.137
   RMS: 0.822
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 3.526
   RMS: 0.858
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.433
   RMS: 0.795
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.278
   RMS: 0.692
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.410
   RMS: 0.677
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 2.388
   RMS: 0.859
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.244
   RMS: 0.769
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 3.802
   RMS: 0.881
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 3.460
   RMS: 0.990
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 3.620
   RMS: 0.667
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 3.445
   RMS: 0.760
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.203
   RMS: 0.795
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 3.571
   RMS: 0.657
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 3.862
   RMS: 0.661
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.318
   RMS: 0.752
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.959
   RMS: 0.799
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.838
   RMS: 0.873
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 4.707
   RMS: 0.904
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 3.379
   RMS: 0.830
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 3.833
   RMS: 0.480
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 2.126
   RMS: 0.566
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.488
   RMS: 0.470
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.635
   RMS: 0.795
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.636
   RMS: 0.635
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.795
   RMS: 0.743
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 3.247
   RMS: 0.864
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.447
   RMS: 0.704
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.102
   RMS: 0.885
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.749
   RMS: 0.917
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 2.945
   RMS: 0.870
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.315
   RMS: 0.756
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 2.644
   RMS: 0.733
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.435
   RMS: 0.625
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.997
   RMS: 0.833
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 3.565
   RMS: 0.695
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.681
   RMS: 0.728
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.266
   RMS: 0.801
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.888
   RMS: 0.751
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 3.232
   RMS: 0.777
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 3.534
   RMS: 0.531
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.720
   RMS: 0.769
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 3.744
   RMS: 0.893
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.333
   RMS: 0.933
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 3.496
   RMS: 0.484
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 3.923
   RMS: 0.943
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 3.752
   RMS: 0.800
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.453
   RMS: 0.885
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.395
   RMS: 0.825
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.300
   RMS: 0.834
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.898
   RMS: 0.430
   Unrecognised keyword: pdb1dqd_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.417
   RMS: 0.641
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1dsf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.913
   RMS: 0.912
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.554
   RMS: 0.813
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 4.469
   RMS: 0.898
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.857
   RMS: 0.834
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.577
   RMS: 0.850
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 1.263
   RMS: 0.502
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.450
   RMS: 0.794
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.426
   RMS: 0.667
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.473
   RMS: 0.862
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.666
   RMS: 0.781
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.434
   RMS: 0.477
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.732
   RMS: 0.823
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 3.697
   RMS: 0.819
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.511
   RMS: 0.741
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 0.763
   RMS: 1.048
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.802
   RMS: 0.468
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.067
   RMS: 1.067
   RMS: 1.541
   RMS: 1.067
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.539
   RMS: 0.428
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.930
   RMS: 5.930
   RMS: 16.608
   RMS: 5.930
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.028
   RMS: 0.720
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.719
   RMS: 0.800
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 0.745
   RMS: 0.502
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 0.564
   RMS: 0.987
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.533
   RMS: 0.446
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.419
   RMS: 0.407
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.776
   RMS: 0.630
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.743
   RMS: 0.627
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.995
   RMS: 0.777
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.991
   RMS: 0.553
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 1.623
   RMS: 0.487
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.068
   RMS: 0.663
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.024
   RMS: 0.760
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 4.154
   RMS: 0.762
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.674
   RMS: 0.531
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.847
   RMS: 0.808
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.740
   RMS: 0.439
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.587
   RMS: 0.772
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.775
   RMS: 0.717
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.847
   RMS: 0.651
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 1.060
   RMS: 0.457
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 1.256
   RMS: 0.577
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.494
   RMS: 0.827
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.659
   RMS: 0.490
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.879
   RMS: 0.487
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 1.294
   RMS: 0.456
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.551
   RMS: 0.831
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.684
   RMS: 0.727
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.391
   RMS: 0.808
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.575
   RMS: 0.737
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.563
   RMS: 0.699
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.516
   RMS: 0.776
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.318
   RMS: 0.744
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.678
   RMS: 0.709
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.260
   RMS: 0.762
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.886
   RMS: 0.812
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.022
   RMS: 0.739
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.799
   RMS: 0.521
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 2.982
   RMS: 0.876
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.406
   RMS: 0.552
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.746
   RMS: 0.774
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.638
   RMS: 0.758
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.944
   RMS: 1.944
   RMS: 13.574
   RMS: 1.944
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.655
   RMS: 0.417
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.132
   RMS: 0.392
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.666
   RMS: 0.780
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.663
   RMS: 0.587
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 1.240
   RMS: 0.575
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.816
   RMS: 0.505
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.661
   RMS: 0.488
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.723
   RMS: 0.416
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.806
   RMS: 1.806
   RMS: 1.168
   RMS: 1.806
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.438
   RMS: 0.879
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.946
   RMS: 0.740
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 1.375
   RMS: 0.505
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.562
   RMS: 0.903
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.175
   RMS: 0.811
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.689
   RMS: 0.856
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.511
   RMS: 0.861
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.657
   RMS: 0.824
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 2.989
   RMS: 0.849
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.747
   RMS: 0.586
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 1.016
   RMS: 0.390
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.210
   RMS: 0.726
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.772
   RMS: 0.721
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.703
   RMS: 0.660
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.756
   RMS: 0.497
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.517
   RMS: 0.882
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.643
   RMS: 0.847
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.942
   RMS: 0.788
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.368
   RMS: 0.588
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.904
   RMS: 0.834
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.628
   RMS: 0.762
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.774
   RMS: 0.455
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.791
   RMS: 0.448
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.849
   RMS: 0.401
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.560
   RMS: 0.463
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.844
   RMS: 0.803
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.583
   RMS: 0.896
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.882
   RMS: 0.498
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 1.342
   RMS: 1.040
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.656
   RMS: 0.840
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.391
   RMS: 0.759
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.471
   RMS: 0.833
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.453
   RMS: 0.672
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.995
   RMS: 0.687
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.085
   RMS: 0.824
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.804
   RMS: 0.382
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.945
   RMS: 0.487
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 1.823
   RMS: 0.508
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.501
   RMS: 0.802
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.679
   RMS: 0.672
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.296
   RMS: 0.671
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.698
   RMS: 0.665
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.803
   RMS: 0.824
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.625
   RMS: 0.741
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.800
   RMS: 0.518
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.515
   RMS: 0.505
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.844
   RMS: 0.649
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.529
   RMS: 0.960
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 3.390
   RMS: 0.949
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.989
   RMS: 0.812
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.514
   RMS: 0.814
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 3.590
   RMS: 0.554
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.384
   RMS: 0.718
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.126
   RMS: 0.435
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.609
   RMS: 0.759
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.850
   RMS: 0.536
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.764
   RMS: 0.796
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.552
   RMS: 0.832
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.454
   RMS: 0.828
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.604
   RMS: 0.739
   Unrecognised keyword: pdb1dql_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.671
   RMS: 0.469
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.562
   RMS: 0.480
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.548
   RMS: 0.490
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.483
   RMS: 0.808
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.885
   RMS: 0.417
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.877
   RMS: 0.802
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.639
   RMS: 0.553
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.561
   RMS: 0.730
   Unrecognised keyword: pdb1dql_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.554
   RMS: 0.843
   Unrecognised keyword: pdb1dql_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 2.906
   RMS: 0.794
   Unrecognised keyword: pdb1dql_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 3.659
   RMS: 0.697
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1e6o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.032
   RMS: 1.032
   RMS: 2.263
   RMS: 1.032
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.115
   RMS: 1.115
   RMS: 5.850
   RMS: 1.115
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 1.333
   RMS: 1.096
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 2.427
   RMS: 1.052
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.158
   RMS: 0.829
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 4.620
   RMS: 0.964
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 1.980
   RMS: 1.031
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 1.830
   RMS: 1.082
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.051
   RMS: 1.051
   RMS: 1.544
   RMS: 1.051
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 2.022
   RMS: 0.791
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.032
   RMS: 1.032
   RMS: 1.677
   RMS: 1.032
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 4.935
   RMS: 1.062
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 1.875
   RMS: 1.041
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.223
   RMS: 1.223
   RMS: 2.165
   RMS: 1.223
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 2.313
   RMS: 0.835
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.177
   RMS: 1.177
   RMS: 2.739
   RMS: 1.177
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.927
   RMS: 0.869
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.999
   RMS: 5.999
   RMS: 16.244
   RMS: 5.999
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.137
   RMS: 1.137
   RMS: 1.225
   RMS: 1.137
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.104
   RMS: 1.104
   RMS: 2.481
   RMS: 1.104
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.492
   RMS: 0.877
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.163
   RMS: 1.163
   RMS: 1.941
   RMS: 1.163
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 2.332
   RMS: 0.901
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.976
   RMS: 0.871
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.670
   RMS: 0.944
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.662
   RMS: 0.942
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 1.686
   RMS: 1.111
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.340
   RMS: 0.742
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.617
   RMS: 0.875
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 1.875
   RMS: 1.040
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.204
   RMS: 0.990
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 5.619
   RMS: 0.961
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.508
   RMS: 0.925
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.043
   RMS: 1.043
   RMS: 1.564
   RMS: 1.043
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.424
   RMS: 0.824
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.097
   RMS: 1.097
   RMS: 1.861
   RMS: 1.097
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 2.529
   RMS: 0.993
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 1.968
   RMS: 1.033
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.541
   RMS: 0.864
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.988
   RMS: 0.879
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.143
   RMS: 1.143
   RMS: 2.014
   RMS: 1.143
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.746
   RMS: 0.882
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.149
   RMS: 0.879
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.810
   RMS: 0.842
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 4.671
   RMS: 1.058
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 1.508
   RMS: 0.975
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 1.861
   RMS: 1.086
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 2.307
   RMS: 1.009
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 2.122
   RMS: 1.096
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.054
   RMS: 1.054
   RMS: 2.271
   RMS: 1.054
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.913
   RMS: 0.998
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.078
   RMS: 1.078
   RMS: 2.384
   RMS: 1.078
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 1.846
   RMS: 1.038
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.093
   RMS: 1.093
   RMS: 2.503
   RMS: 1.093
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.671
   RMS: 0.964
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 2.409
   RMS: 0.914
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.151
   RMS: 1.151
   RMS: 4.030
   RMS: 1.151
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.294
   RMS: 0.796
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.157
   RMS: 1.157
   RMS: 2.092
   RMS: 1.157
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 5.039
   RMS: 1.074
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.165
   RMS: 2.165
   RMS: 14.499
   RMS: 2.165
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.370
   RMS: 0.815
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.930
   RMS: 0.850
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 1.998
   RMS: 1.089
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.525
   RMS: 0.901
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.042
   RMS: 0.955
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.585
   RMS: 0.901
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 2.266
   RMS: 0.825
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.469
   RMS: 0.873
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.968
   RMS: 1.968
   RMS: 1.889
   RMS: 1.968
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 4.472
   RMS: 1.120
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 2.754
   RMS: 1.038
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.435
   RMS: 0.828
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 4.953
   RMS: 1.146
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.088
   RMS: 1.088
   RMS: 4.447
   RMS: 1.088
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 2.323
   RMS: 1.074
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.275
   RMS: 1.275
   RMS: 2.300
   RMS: 1.275
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.084
   RMS: 1.084
   RMS: 2.058
   RMS: 1.084
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 4.031
   RMS: 1.050
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 2.525
   RMS: 0.821
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.691
   RMS: 0.850
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 3.052
   RMS: 1.033
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 2.307
   RMS: 1.086
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.053
   RMS: 1.053
   RMS: 1.632
   RMS: 1.053
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.401
   RMS: 0.868
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 1.802
   RMS: 1.063
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 1.644
   RMS: 1.063
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.085
   RMS: 1.085
   RMS: 1.243
   RMS: 1.085
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.090
   RMS: 0.915
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 1.529
   RMS: 1.112
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 2.458
   RMS: 1.099
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.819
   RMS: 0.846
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 2.139
   RMS: 0.873
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 2.198
   RMS: 0.915
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.720
   RMS: 0.824
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 5.024
   RMS: 1.089
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 2.284
   RMS: 1.089
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.340
   RMS: 0.862
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.267
   RMS: 1.267
   RMS: 2.724
   RMS: 1.267
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 1.579
   RMS: 0.981
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 1.848
   RMS: 1.007
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.109
   RMS: 1.109
   RMS: 2.180
   RMS: 1.109
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 1.681
   RMS: 0.962
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.818
   RMS: 0.933
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 2.678
   RMS: 1.081
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.208
   RMS: 0.858
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.307
   RMS: 0.809
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.343
   RMS: 0.794
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 1.971
   RMS: 1.063
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.110
   RMS: 1.110
   RMS: 1.468
   RMS: 1.110
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 4.131
   RMS: 0.989
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 1.734
   RMS: 1.041
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 1.575
   RMS: 1.034
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.700
   RMS: 1.005
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.440
   RMS: 0.771
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 2.159
   RMS: 0.823
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.865
   RMS: 0.915
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.209
   RMS: 1.209
   RMS: 3.010
   RMS: 1.209
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.087
   RMS: 1.087
   RMS: 4.485
   RMS: 1.087
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 2.850
   RMS: 1.074
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.041
   RMS: 1.041
   RMS: 2.033
   RMS: 1.041
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 4.409
   RMS: 0.883
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.841
   RMS: 0.990
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.165
   RMS: 0.875
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.835
   RMS: 0.991
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.473
   RMS: 0.948
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 5.137
   RMS: 1.089
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 4.907
   RMS: 1.077
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 2.188
   RMS: 1.037
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.160
   RMS: 1.160
   RMS: 1.882
   RMS: 1.160
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.438
   RMS: 0.837
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.425
   RMS: 0.887
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 2.085
   RMS: 0.860
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.091
   RMS: 1.091
   RMS: 1.689
   RMS: 1.091
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.341
   RMS: 0.897
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 1.313
   RMS: 1.003
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 1.788
   RMS: 0.937
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 2.189
   RMS: 1.048
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 2.449
   RMS: 1.017
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 3.685
   RMS: 1.096
   Unrecognised keyword: pdb1dsf_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 4.956
   RMS: 1.120
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1eap_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 4.203
   RMS: 0.415
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 1.088
   RMS: 0.325
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.291
   RMS: 0.291
   RMS: 0.350
   RMS: 0.291
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.535
   RMS: 0.871
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 3.135
   RMS: 0.496
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.496
   RMS: 0.873
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.678
   RMS: 0.727
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 0.988
   RMS: 0.292
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.480
   RMS: 0.872
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.770
   RMS: 0.762
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.346
   RMS: 0.781
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.617
   RMS: 0.439
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.017
   RMS: 0.552
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.482
   RMS: 0.793
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.698
   RMS: 0.812
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.588
   RMS: 0.627
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.902
   RMS: 5.902
   RMS: 16.908
   RMS: 5.902
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.209
   RMS: 0.801
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.536
   RMS: 0.441
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.009
   RMS: 0.897
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.797
   RMS: 0.504
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.500
   RMS: 0.810
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.602
   RMS: 0.847
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.893
   RMS: 0.540
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.900
   RMS: 0.547
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.950
   RMS: 0.732
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.117
   RMS: 0.817
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 2.018
   RMS: 0.900
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.028
   RMS: 0.723
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 1.273
   RMS: 0.530
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 3.807
   RMS: 0.515
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.999
   RMS: 0.917
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.299
   RMS: 0.299
   RMS: 0.950
   RMS: 0.299
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.954
   RMS: 0.754
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.724
   RMS: 0.452
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.573
   RMS: 0.642
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.710
   RMS: 0.762
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.122
   RMS: 0.825
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 1.477
   RMS: 0.989
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.694
   RMS: 0.553
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.795
   RMS: 0.833
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.129
   RMS: 0.838
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.642
   RMS: 0.858
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 3.216
   RMS: 0.607
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 1.096
   RMS: 0.517
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.525
   RMS: 0.356
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 0.394
   RMS: 0.365
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 0.618
   RMS: 1.046
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.369
   RMS: 0.431
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.646
   RMS: 0.416
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.406
   RMS: 0.708
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.530
   RMS: 0.789
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.610
   RMS: 0.339
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.086
   RMS: 0.417
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.530
   RMS: 0.676
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 2.671
   RMS: 0.909
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.561
   RMS: 0.835
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.551
   RMS: 0.845
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 3.309
   RMS: 0.330
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.101
   RMS: 2.101
   RMS: 13.723
   RMS: 2.101
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.943
   RMS: 0.740
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.429
   RMS: 0.810
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.300
   RMS: 0.300
   RMS: 0.905
   RMS: 0.300
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.938
   RMS: 0.859
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 1.519
   RMS: 0.996
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 0.999
   RMS: 0.902
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.461
   RMS: 0.801
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.887
   RMS: 0.837
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.645
   RMS: 1.645
   RMS: 1.572
   RMS: 1.645
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 3.114
   RMS: 0.400
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.666
   RMS: 0.476
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.506
   RMS: 0.820
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 3.245
   RMS: 0.378
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 2.892
   RMS: 0.346
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.321
   RMS: 0.321
   RMS: 0.445
   RMS: 0.321
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.503
   RMS: 0.829
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.855
   RMS: 0.643
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 2.744
   RMS: 0.724
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.642
   RMS: 0.803
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.007
   RMS: 0.781
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.945
   RMS: 0.335
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.984
   RMS: 0.620
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.116
   RMS: 1.116
   RMS: 0.840
   RMS: 1.116
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.913
   RMS: 0.813
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.663
   RMS: 0.777
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.836
   RMS: 0.786
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.264
   RMS: 0.814
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.560
   RMS: 0.647
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.146
   RMS: 0.363
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.513
   RMS: 0.335
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.825
   RMS: 0.851
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.715
   RMS: 0.830
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.651
   RMS: 0.670
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.607
   RMS: 0.660
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 3.511
   RMS: 0.369
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.589
   RMS: 0.449
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.082
   RMS: 0.859
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 1.481
   RMS: 0.988
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.795
   RMS: 0.629
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 0.502
   RMS: 0.292
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.490
   RMS: 0.367
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.724
   RMS: 0.487
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.154
   RMS: 0.546
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 1.022
   RMS: 0.628
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.164
   RMS: 0.767
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.118
   RMS: 0.788
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.203
   RMS: 0.855
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.193
   RMS: 0.193
   RMS: 0.448
   RMS: 0.193
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.004
   RMS: 0.830
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.043
   RMS: 0.674
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.671
   RMS: 0.793
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.060
   RMS: 0.439
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.791
   RMS: 0.504
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.079
   RMS: 0.729
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.469
   RMS: 0.828
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.707
   RMS: 0.504
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.209
   RMS: 0.683
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 3.110
   RMS: 0.567
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.741
   RMS: 0.537
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 0.456
   RMS: 0.292
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.316
   RMS: 0.710
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.567
   RMS: 0.569
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.324
   RMS: 0.844
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.801
   RMS: 0.512
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.963
   RMS: 0.694
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.321
   RMS: 0.321
   RMS: 3.423
   RMS: 0.321
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 3.221
   RMS: 0.333
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.403
   RMS: 0.440
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.886
   RMS: 0.759
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.891
   RMS: 0.734
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.895
   RMS: 0.860
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.517
   RMS: 0.847
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.596
   RMS: 0.780
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.146
   RMS: 0.910
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.085
   RMS: 0.894
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.625
   RMS: 0.868
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.677
   RMS: 0.332
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.303
   RMS: 0.402
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 2.658
   RMS: 0.884
   Unrecognised keyword: pdb1e6o_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 3.303
   RMS: 0.932
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1egj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 4.993
   RMS: 0.463
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 4.061
   RMS: 0.471
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 5.062
   RMS: 0.978
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 2.635
   RMS: 0.621
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 4.480
   RMS: 0.865
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 4.558
   RMS: 0.724
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 4.698
   RMS: 0.480
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 4.397
   RMS: 0.966
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 4.771
   RMS: 0.779
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.415
   RMS: 0.783
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 4.474
   RMS: 0.451
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 4.511
   RMS: 0.518
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 4.135
   RMS: 0.921
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.989
   RMS: 0.821
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 4.611
   RMS: 0.730
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.854
   RMS: 5.854
   RMS: 17.309
   RMS: 5.854
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 5.104
   RMS: 0.873
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 4.143
   RMS: 0.503
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 4.722
   RMS: 0.993
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 4.320
   RMS: 0.467
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 4.101
   RMS: 0.925
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 4.366
   RMS: 0.943
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 4.873
   RMS: 0.629
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 4.871
   RMS: 0.638
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 4.869
   RMS: 0.793
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 4.927
   RMS: 0.936
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 5.540
   RMS: 1.004
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 4.874
   RMS: 0.744
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 4.999
   RMS: 0.649
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 2.340
   RMS: 0.625
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 4.879
   RMS: 1.014
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 4.825
   RMS: 0.487
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 4.827
   RMS: 0.868
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 4.564
   RMS: 0.555
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 4.116
   RMS: 0.699
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 4.664
   RMS: 0.782
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 4.947
   RMS: 0.924
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 5.268
   RMS: 1.086
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 4.392
   RMS: 0.564
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 4.577
   RMS: 0.941
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 4.996
   RMS: 0.922
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 5.348
   RMS: 0.971
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.833
   RMS: 0.660
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 4.748
   RMS: 0.576
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 4.446
   RMS: 0.416
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 4.211
   RMS: 0.423
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.136
   RMS: 1.136
   RMS: 4.501
   RMS: 1.136
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 4.227
   RMS: 0.445
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 4.444
   RMS: 0.550
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 4.186
   RMS: 0.813
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 4.503
   RMS: 0.800
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 4.147
   RMS: 0.468
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 4.895
   RMS: 0.521
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 4.319
   RMS: 0.762
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 3.362
   RMS: 0.884
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 5.424
   RMS: 0.957
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 4.531
   RMS: 0.863
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 2.261
   RMS: 0.456
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.119
   RMS: 2.119
   RMS: 12.980
   RMS: 2.119
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 4.820
   RMS: 0.872
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 4.974
   RMS: 0.911
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 4.290
   RMS: 0.389
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 5.642
   RMS: 0.966
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 5.355
   RMS: 1.112
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 4.991
   RMS: 1.047
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 4.125
   RMS: 0.879
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 4.887
   RMS: 0.943
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.626
   RMS: 1.626
   RMS: 4.644
   RMS: 1.626
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 3.450
   RMS: 0.420
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 3.873
   RMS: 0.568
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 5.263
   RMS: 0.972
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.771
   RMS: 0.380
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 3.333
   RMS: 0.526
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 4.354
   RMS: 0.375
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 4.158
   RMS: 0.845
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 4.560
   RMS: 0.631
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.240
   RMS: 0.749
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 4.094
   RMS: 0.902
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 4.963
   RMS: 0.887
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 3.690
   RMS: 0.436
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 4.435
   RMS: 0.630
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.199
   RMS: 1.199
   RMS: 4.833
   RMS: 1.199
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 4.840
   RMS: 0.922
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 4.483
   RMS: 0.775
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 4.560
   RMS: 0.815
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 4.947
   RMS: 0.812
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 5.348
   RMS: 0.756
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 5.081
   RMS: 0.394
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 4.131
   RMS: 0.434
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 4.741
   RMS: 0.978
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 4.574
   RMS: 0.938
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 4.465
   RMS: 0.790
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 4.548
   RMS: 0.770
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 3.789
   RMS: 0.418
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 4.246
   RMS: 0.407
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 5.048
   RMS: 0.988
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 3.989
   RMS: 0.989
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 4.734
   RMS: 0.690
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 4.548
   RMS: 0.440
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 4.160
   RMS: 0.430
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 4.586
   RMS: 0.620
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 4.949
   RMS: 0.638
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 4.181
   RMS: 0.643
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 4.994
   RMS: 0.885
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 5.078
   RMS: 0.933
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 5.822
   RMS: 0.979
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 4.503
   RMS: 0.469
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 4.895
   RMS: 0.869
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.666
   RMS: 0.728
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 4.695
   RMS: 0.821
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 4.755
   RMS: 0.469
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 4.746
   RMS: 0.620
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 5.033
   RMS: 0.849
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 4.299
   RMS: 0.936
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 4.708
   RMS: 0.678
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 4.225
   RMS: 0.651
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 2.911
   RMS: 0.489
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 3.893
   RMS: 0.594
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 4.361
   RMS: 0.422
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 4.164
   RMS: 0.797
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 4.439
   RMS: 0.624
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 5.247
   RMS: 0.948
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 4.573
   RMS: 0.577
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 4.938
   RMS: 0.831
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 2.433
   RMS: 0.426
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 2.218
   RMS: 0.397
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 4.263
   RMS: 0.539
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 4.389
   RMS: 0.827
   Unrecognised keyword: pdb1eap_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 4.879
   RMS: 0.831
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 4.851
   RMS: 0.964
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 4.246
   RMS: 0.960
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 4.615
   RMS: 0.812
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 5.111
   RMS: 1.007
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 4.862
   RMS: 0.957
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 4.662
   RMS: 0.945
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 4.222
   RMS: 0.409
   Unrecognised keyword: pdb1eap_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 4.771
   RMS: 0.467
   Unrecognised keyword: pdb1eap_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.812
   RMS: 0.916
   Unrecognised keyword: pdb1eap_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 2.928
   RMS: 0.911
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ehl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 1.253
   RMS: 0.405
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.027
   RMS: 0.885
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.790
   RMS: 0.535
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.823
   RMS: 0.868
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.683
   RMS: 0.765
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.299
   RMS: 0.299
   RMS: 0.703
   RMS: 0.299
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.973
   RMS: 0.893
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.679
   RMS: 0.768
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 4.036
   RMS: 0.780
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.674
   RMS: 0.433
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 1.190
   RMS: 0.602
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.126
   RMS: 0.821
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 2.155
   RMS: 0.806
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.674
   RMS: 0.654
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.856
   RMS: 5.856
   RMS: 16.493
   RMS: 5.856
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.211
   RMS: 0.763
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.264
   RMS: 0.468
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.821
   RMS: 0.900
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.009
   RMS: 0.606
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.193
   RMS: 0.820
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.871
   RMS: 0.850
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.473
   RMS: 0.575
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.477
   RMS: 0.575
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.776
   RMS: 0.726
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.721
   RMS: 0.850
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.277
   RMS: 0.893
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.751
   RMS: 0.743
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.371
   RMS: 0.540
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 4.630
   RMS: 0.596
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.359
   RMS: 0.898
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 0.710
   RMS: 0.312
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.392
   RMS: 0.778
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.698
   RMS: 0.429
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.286
   RMS: 0.705
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.884
   RMS: 0.747
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.443
   RMS: 0.835
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 0.797
   RMS: 1.003
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.934
   RMS: 0.555
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.593
   RMS: 0.830
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.391
   RMS: 0.835
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.696
   RMS: 0.870
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 3.790
   RMS: 0.665
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.787
   RMS: 0.526
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.772
   RMS: 0.369
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.066
   RMS: 0.395
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 0.899
   RMS: 1.033
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.046
   RMS: 0.498
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.836
   RMS: 0.453
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.127
   RMS: 0.718
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.723
   RMS: 0.810
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 1.240
   RMS: 0.383
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.450
   RMS: 0.427
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 1.199
   RMS: 0.731
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.210
   RMS: 0.889
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.724
   RMS: 0.836
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.903
   RMS: 0.870
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 4.064
   RMS: 0.403
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.088
   RMS: 2.088
   RMS: 13.888
   RMS: 2.088
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.473
   RMS: 0.754
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.063
   RMS: 0.821
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 1.213
   RMS: 0.310
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.949
   RMS: 0.857
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.487
   RMS: 0.999
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 0.421
   RMS: 0.904
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.146
   RMS: 0.808
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.375
   RMS: 0.848
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.632
   RMS: 1.632
   RMS: 1.375
   RMS: 1.632
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 3.675
   RMS: 0.443
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 1.526
   RMS: 0.522
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.602
   RMS: 0.845
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 4.017
   RMS: 0.449
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 3.563
   RMS: 0.397
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.084
   RMS: 0.402
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.191
   RMS: 0.788
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.878
   RMS: 0.634
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 3.269
   RMS: 0.712
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.398
   RMS: 0.816
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.717
   RMS: 0.812
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 1.855
   RMS: 0.361
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.188
   RMS: 0.601
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.088
   RMS: 1.088
   RMS: 0.389
   RMS: 1.088
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.499
   RMS: 0.796
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.771
   RMS: 0.783
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.732
   RMS: 0.783
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.775
   RMS: 0.807
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.552
   RMS: 0.695
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.366
   RMS: 0.366
   RMS: 0.619
   RMS: 0.366
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.358
   RMS: 0.358
   RMS: 1.248
   RMS: 0.358
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.581
   RMS: 0.839
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.836
   RMS: 0.860
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.931
   RMS: 0.677
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.703
   RMS: 0.662
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 4.108
   RMS: 0.438
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 1.164
   RMS: 0.481
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.381
   RMS: 0.873
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 1.890
   RMS: 0.975
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.398
   RMS: 0.639
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 0.625
   RMS: 0.352
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.156
   RMS: 0.408
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.595
   RMS: 0.493
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.737
   RMS: 0.568
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.469
   RMS: 0.638
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.364
   RMS: 0.785
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.326
   RMS: 0.813
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.378
   RMS: 0.863
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.280
   RMS: 0.280
   RMS: 0.703
   RMS: 0.280
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.375
   RMS: 0.786
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.471
   RMS: 0.724
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.550
   RMS: 0.788
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.935
   RMS: 0.507
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.539
   RMS: 0.524
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.469
   RMS: 0.777
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.945
   RMS: 0.862
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.681
   RMS: 0.582
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.772
   RMS: 0.693
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 3.699
   RMS: 0.577
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 1.601
   RMS: 0.603
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.798
   RMS: 0.309
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.715
   RMS: 0.743
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.729
   RMS: 0.582
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.410
   RMS: 0.851
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.619
   RMS: 0.514
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.455
   RMS: 0.678
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 4.165
   RMS: 0.367
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 3.971
   RMS: 0.341
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 1.033
   RMS: 0.447
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.044
   RMS: 0.698
   Unrecognised keyword: pdb1egj_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.305
   RMS: 0.764
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.376
   RMS: 0.861
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.954
   RMS: 0.870
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.554
   RMS: 0.796
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 0.375
   RMS: 0.918
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 0.698
   RMS: 0.904
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.556
   RMS: 0.859
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 1.074
   RMS: 0.314
   Unrecognised keyword: pdb1egj_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.445
   RMS: 0.445
   Unrecognised keyword: pdb1egj_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.017
   RMS: 0.862
   Unrecognised keyword: pdb1egj_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 4.013
   RMS: 0.903
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ejo_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.673
   RMS: 0.895
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 3.133
   RMS: 0.566
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.605
   RMS: 0.896
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.752
   RMS: 0.757
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 1.048
   RMS: 0.354
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.604
   RMS: 0.906
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.006
   RMS: 0.830
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.376
   RMS: 0.834
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.671
   RMS: 0.455
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.952
   RMS: 0.554
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.613
   RMS: 0.849
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.516
   RMS: 0.851
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.728
   RMS: 0.696
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.861
   RMS: 5.861
   RMS: 16.723
   RMS: 5.861
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.399
   RMS: 0.834
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.401
   RMS: 0.508
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.136
   RMS: 0.924
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.724
   RMS: 0.516
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.298
   RMS: 0.839
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.581
   RMS: 0.863
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.064
   RMS: 0.604
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.051
   RMS: 0.617
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.229
   RMS: 0.799
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.356
   RMS: 0.852
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 2.008
   RMS: 0.930
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.231
   RMS: 0.774
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.406
   RMS: 0.598
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.733
   RMS: 0.553
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.088
   RMS: 0.945
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.151
   RMS: 0.392
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.127
   RMS: 0.794
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.782
   RMS: 0.460
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.431
   RMS: 0.654
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.972
   RMS: 0.791
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.346
   RMS: 0.857
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.694
   RMS: 1.035
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.630
   RMS: 0.589
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.908
   RMS: 0.841
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.321
   RMS: 0.880
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.783
   RMS: 0.904
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.276
   RMS: 0.680
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.111
   RMS: 0.571
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 0.613
   RMS: 0.435
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.345
   RMS: 0.441
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.102
   RMS: 1.102
   RMS: 0.641
   RMS: 1.102
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.351
   RMS: 0.492
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.624
   RMS: 0.481
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.400
   RMS: 0.723
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.619
   RMS: 0.818
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.591
   RMS: 0.411
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 1.255
   RMS: 0.500
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.627
   RMS: 0.727
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 2.746
   RMS: 0.951
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.779
   RMS: 0.883
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 0.796
   RMS: 0.914
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 3.253
   RMS: 0.359
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.063
   RMS: 2.063
   RMS: 13.397
   RMS: 2.063
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.106
   RMS: 0.774
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.394
   RMS: 0.842
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 0.835
   RMS: 0.378
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 2.120
   RMS: 0.898
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 1.680
   RMS: 1.036
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.177
   RMS: 0.938
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.510
   RMS: 0.835
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.105
   RMS: 0.854
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.672
   RMS: 1.672
   RMS: 1.434
   RMS: 1.672
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.180
   RMS: 0.458
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.445
   RMS: 0.525
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.694
   RMS: 0.860
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 3.172
   RMS: 0.402
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 2.876
   RMS: 0.386
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 0.544
   RMS: 0.390
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.312
   RMS: 0.866
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.831
   RMS: 0.681
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 2.768
   RMS: 0.761
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.492
   RMS: 0.820
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.298
   RMS: 0.804
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.736
   RMS: 0.404
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.827
   RMS: 0.669
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.144
   RMS: 1.144
   RMS: 1.027
   RMS: 1.144
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.145
   RMS: 0.854
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.733
   RMS: 0.809
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.931
   RMS: 0.836
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.368
   RMS: 0.855
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.755
   RMS: 0.655
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.292
   RMS: 0.407
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.284
   RMS: 0.393
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.005
   RMS: 0.889
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.822
   RMS: 0.854
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.806
   RMS: 0.744
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.825
   RMS: 0.703
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 3.543
   RMS: 0.450
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.460
   RMS: 0.464
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.301
   RMS: 0.902
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 1.216
   RMS: 0.979
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.954
   RMS: 0.672
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.661
   RMS: 0.381
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.396
   RMS: 0.428
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.797
   RMS: 0.571
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 1.221
   RMS: 0.642
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.812
   RMS: 0.638
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.282
   RMS: 0.793
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.340
   RMS: 0.832
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 2.262
   RMS: 0.870
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.334
   RMS: 0.334
   RMS: 0.620
   RMS: 0.334
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.083
   RMS: 0.854
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 3.122
   RMS: 0.725
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.924
   RMS: 0.846
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 1.167
   RMS: 0.448
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.913
   RMS: 0.579
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.268
   RMS: 0.774
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.457
   RMS: 0.854
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 0.995
   RMS: 0.599
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 1.228
   RMS: 0.721
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 3.111
   RMS: 0.593
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.510
   RMS: 0.578
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 0.547
   RMS: 0.341
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 3.411
   RMS: 0.763
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.625
   RMS: 0.627
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.537
   RMS: 0.871
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.827
   RMS: 0.560
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.200
   RMS: 0.734
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 3.383
   RMS: 0.418
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 3.178
   RMS: 0.414
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.345
   RMS: 0.471
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.831
   RMS: 0.782
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.086
   RMS: 0.762
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.042
   RMS: 0.895
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.553
   RMS: 0.873
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.794
   RMS: 0.829
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.336
   RMS: 0.945
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 1.277
   RMS: 0.929
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.871
   RMS: 0.888
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.509
   RMS: 0.383
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 1.523
   RMS: 0.447
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 2.772
   RMS: 0.934
   Unrecognised keyword: pdb1ehl_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 3.304
   RMS: 0.963
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1eo8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 4.095
   RMS: 0.792
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.327
   RMS: 0.787
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.099
   RMS: 0.924
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.724
   RMS: 0.831
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.256
   RMS: 0.395
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.166
   RMS: 0.886
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 4.485
   RMS: 0.889
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.214
   RMS: 0.857
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.154
   RMS: 1.154
   RMS: 1.443
   RMS: 1.154
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 1.485
   RMS: 0.501
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.180
   RMS: 1.180
   RMS: 1.842
   RMS: 1.180
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.443
   RMS: 0.483
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.929
   RMS: 5.929
   RMS: 16.420
   RMS: 5.929
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.984
   RMS: 0.772
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.826
   RMS: 0.885
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.616
   RMS: 0.372
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.083
   RMS: 1.083
   RMS: 1.168
   RMS: 1.083
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.531
   RMS: 0.467
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 1.211
   RMS: 0.447
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 1.275
   RMS: 0.692
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.250
   RMS: 0.682
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.284
   RMS: 0.830
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.725
   RMS: 0.350
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 1.619
   RMS: 0.354
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.650
   RMS: 0.747
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.818
   RMS: 0.773
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 5.031
   RMS: 0.847
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 1.049
   RMS: 0.404
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.968
   RMS: 0.828
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.787
   RMS: 0.370
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.223
   RMS: 0.848
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.876
   RMS: 0.822
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.489
   RMS: 0.742
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 1.203
   RMS: 0.403
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.718
   RMS: 0.440
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.394
   RMS: 0.887
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 1.111
   RMS: 0.433
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.711
   RMS: 0.405
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.765
   RMS: 0.353
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 4.333
   RMS: 0.881
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.792
   RMS: 0.771
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.150
   RMS: 0.910
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.636
   RMS: 0.860
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.562
   RMS: 0.624
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.589
   RMS: 0.860
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.231
   RMS: 0.817
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.706
   RMS: 0.762
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.172
   RMS: 0.889
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.883
   RMS: 0.902
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.309
   RMS: 0.762
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.889
   RMS: 0.588
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 3.451
   RMS: 0.968
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 1.341
   RMS: 0.394
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.594
   RMS: 0.903
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 4.430
   RMS: 0.856
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.008
   RMS: 2.008
   RMS: 14.238
   RMS: 2.008
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.798
   RMS: 0.426
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 1.591
   RMS: 0.318
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.115
   RMS: 0.861
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.975
   RMS: 0.337
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 1.102
   RMS: 0.406
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 1.328
   RMS: 0.385
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 1.448
   RMS: 0.517
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 1.114
   RMS: 0.324
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.823
   RMS: 1.823
   RMS: 1.394
   RMS: 1.823
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 4.040
   RMS: 0.948
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 2.004
   RMS: 0.877
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 1.386
   RMS: 0.370
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 4.242
   RMS: 1.023
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 4.023
   RMS: 0.880
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.750
   RMS: 0.918
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 1.563
   RMS: 0.939
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.502
   RMS: 0.931
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 3.609
   RMS: 0.872
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.861
   RMS: 0.608
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 1.406
   RMS: 0.379
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 2.226
   RMS: 0.808
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.701
   RMS: 0.818
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 1.219
   RMS: 0.544
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.827
   RMS: 0.329
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.017
   RMS: 0.894
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.756
   RMS: 0.867
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.423
   RMS: 0.877
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 1.085
   RMS: 0.524
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.348
   RMS: 0.927
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.740
   RMS: 0.876
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 1.294
   RMS: 0.369
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.691
   RMS: 0.407
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.697
   RMS: 0.504
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 1.004
   RMS: 0.463
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 4.693
   RMS: 0.874
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 1.663
   RMS: 0.980
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 0.959
   RMS: 0.340
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.151
   RMS: 1.151
   RMS: 1.871
   RMS: 1.151
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.102
   RMS: 0.888
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.230
   RMS: 0.856
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.372
   RMS: 0.948
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.969
   RMS: 0.731
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.673
   RMS: 0.719
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 2.141
   RMS: 0.935
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.860
   RMS: 0.330
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 1.048
   RMS: 0.354
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 1.609
   RMS: 0.292
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.383
   RMS: 0.863
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.061
   RMS: 0.756
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 3.854
   RMS: 0.742
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.232
   RMS: 0.792
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.810
   RMS: 0.854
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.209
   RMS: 0.799
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.046
   RMS: 0.515
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.403
   RMS: 0.458
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.398
   RMS: 0.620
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 2.552
   RMS: 1.011
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 4.087
   RMS: 0.975
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 2.089
   RMS: 0.943
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.319
   RMS: 0.870
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 4.238
   RMS: 0.522
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.090
   RMS: 0.802
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.266
   RMS: 0.266
   RMS: 1.089
   RMS: 0.266
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.261
   RMS: 0.808
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.040
   RMS: 0.462
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 4.564
   RMS: 0.917
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 4.283
   RMS: 0.924
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.502
   RMS: 0.886
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.995
   RMS: 0.825
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 1.005
   RMS: 0.436
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.967
   RMS: 0.344
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 1.357
   RMS: 0.339
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.067
   RMS: 0.921
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 1.169
   RMS: 0.396
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.703
   RMS: 0.775
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 1.260
   RMS: 0.418
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.492
   RMS: 0.821
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 2.123
   RMS: 0.872
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 3.242
   RMS: 0.866
   Unrecognised keyword: pdb1ejo_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 4.414
   RMS: 0.806
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1etz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.337
   RMS: 0.782
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 3.545
   RMS: 0.599
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 3.759
   RMS: 0.493
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.270
   RMS: 0.803
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.429
   RMS: 0.625
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.136
   RMS: 0.631
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 3.444
   RMS: 0.571
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 3.559
   RMS: 0.779
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.168
   RMS: 0.720
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.660
   RMS: 0.828
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 3.396
   RMS: 0.642
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.840
   RMS: 5.840
   RMS: 17.374
   RMS: 5.840
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.848
   RMS: 0.680
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.112
   RMS: 0.619
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.763
   RMS: 0.776
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.526
   RMS: 0.679
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 3.313
   RMS: 0.744
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 3.489
   RMS: 0.766
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 3.632
   RMS: 0.482
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 3.647
   RMS: 0.471
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.491
   RMS: 0.625
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.679
   RMS: 0.706
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 4.431
   RMS: 0.805
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 3.481
   RMS: 0.642
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.328
   RMS: 0.328
   RMS: 3.930
   RMS: 0.328
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.394
   RMS: 0.611
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.762
   RMS: 0.861
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 3.526
   RMS: 0.454
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.699
   RMS: 0.682
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.489
   RMS: 0.620
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.181
   RMS: 0.688
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 3.240
   RMS: 0.683
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.711
   RMS: 0.737
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.947
   RMS: 0.908
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.374
   RMS: 0.660
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.510
   RMS: 0.781
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.811
   RMS: 0.776
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 4.262
   RMS: 0.767
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 1.415
   RMS: 0.582
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 3.858
   RMS: 0.432
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 3.360
   RMS: 0.499
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 3.201
   RMS: 0.473
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 3.371
   RMS: 1.005
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 3.258
   RMS: 0.639
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.390
   RMS: 0.390
   RMS: 3.540
   RMS: 0.390
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 3.163
   RMS: 0.571
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 3.483
   RMS: 0.715
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 3.083
   RMS: 0.597
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 3.657
   RMS: 0.487
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 3.113
   RMS: 0.689
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.374
   RMS: 0.824
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.932
   RMS: 0.724
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 3.247
   RMS: 0.826
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.883
   RMS: 0.585
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.091
   RMS: 2.091
   RMS: 13.880
   RMS: 2.091
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.664
   RMS: 0.687
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.820
   RMS: 0.749
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.536
   RMS: 0.601
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 4.363
   RMS: 0.750
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 4.116
   RMS: 0.883
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.678
   RMS: 0.840
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.209
   RMS: 0.720
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.580
   RMS: 0.784
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.721
   RMS: 1.721
   RMS: 4.005
   RMS: 1.721
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.926
   RMS: 0.613
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.052
   RMS: 0.612
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.928
   RMS: 0.748
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 1.113
   RMS: 0.628
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.089
   RMS: 0.529
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.153
   RMS: 0.635
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.187
   RMS: 0.694
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 3.562
   RMS: 0.761
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.840
   RMS: 0.565
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.094
   RMS: 0.749
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 3.574
   RMS: 0.755
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 2.881
   RMS: 0.559
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.576
   RMS: 0.685
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 3.577
   RMS: 1.034
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.620
   RMS: 0.726
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.477
   RMS: 0.636
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.632
   RMS: 0.628
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.987
   RMS: 0.716
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 4.058
   RMS: 0.656
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 3.669
   RMS: 0.591
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 3.169
   RMS: 0.532
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 3.540
   RMS: 0.793
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.373
   RMS: 0.783
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 3.229
   RMS: 0.632
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 3.410
   RMS: 0.607
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.519
   RMS: 0.674
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.152
   RMS: 0.583
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.753
   RMS: 0.758
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 3.581
   RMS: 0.995
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 3.526
   RMS: 0.481
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 3.424
   RMS: 0.532
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.234
   RMS: 0.611
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 3.592
   RMS: 0.383
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 3.645
   RMS: 0.438
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.251
   RMS: 0.635
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.908
   RMS: 0.703
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 3.744
   RMS: 0.723
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 4.517
   RMS: 0.761
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 3.340
   RMS: 0.482
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 3.763
   RMS: 0.658
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.144
   RMS: 0.624
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 3.435
   RMS: 0.714
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 3.642
   RMS: 0.616
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 3.582
   RMS: 0.406
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.770
   RMS: 0.681
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 3.314
   RMS: 0.701
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 3.396
   RMS: 0.404
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 2.968
   RMS: 0.769
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.583
   RMS: 0.754
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 3.054
   RMS: 0.665
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 3.366
   RMS: 0.518
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 1.627
   RMS: 0.668
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 3.465
   RMS: 0.404
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 3.880
   RMS: 0.774
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.366
   RMS: 0.366
   RMS: 3.562
   RMS: 0.366
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.626
   RMS: 0.660
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.869
   RMS: 0.525
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.682
   RMS: 0.501
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 3.199
   RMS: 0.592
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 3.622
   RMS: 0.572
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.644
   RMS: 0.647
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 3.679
   RMS: 0.785
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.402
   RMS: 0.796
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 3.467
   RMS: 0.670
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.811
   RMS: 0.870
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.744
   RMS: 0.845
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 3.413
   RMS: 0.858
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.410
   RMS: 0.552
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 3.082
   RMS: 0.595
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.676
   RMS: 0.749
   Unrecognised keyword: pdb1eo8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.919
   RMS: 0.841
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ezv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.416
   RMS: 0.680
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.796
   RMS: 0.849
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.325
   RMS: 0.691
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.582
   RMS: 0.522
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 3.536
   RMS: 0.544
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.422
   RMS: 0.771
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 0.698
   RMS: 1.021
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.628
   RMS: 0.771
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.072
   RMS: 1.072
   RMS: 1.707
   RMS: 1.072
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.426
   RMS: 0.705
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.824
   RMS: 5.824
   RMS: 16.638
   RMS: 5.824
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.930
   RMS: 0.601
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.617
   RMS: 0.874
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.859
   RMS: 0.790
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 0.742
   RMS: 0.953
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.658
   RMS: 0.748
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.538
   RMS: 0.686
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.648
   RMS: 0.705
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.636
   RMS: 0.724
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.773
   RMS: 0.563
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.903
   RMS: 0.726
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.604
   RMS: 0.719
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.855
   RMS: 0.484
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.020
   RMS: 0.748
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 4.075
   RMS: 0.864
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.678
   RMS: 0.847
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.665
   RMS: 0.840
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.695
   RMS: 0.674
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.602
   RMS: 0.922
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.716
   RMS: 0.870
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.551
   RMS: 0.465
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.895
   RMS: 0.696
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.191
   RMS: 0.835
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.500
   RMS: 0.838
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.560
   RMS: 0.766
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.892
   RMS: 0.713
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.343
   RMS: 0.744
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.371
   RMS: 0.812
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.896
   RMS: 0.822
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.361
   RMS: 0.820
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.481
   RMS: 0.764
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 0.515
   RMS: 1.010
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.487
   RMS: 0.841
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.503
   RMS: 0.737
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.586
   RMS: 0.633
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.328
   RMS: 0.414
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.749
   RMS: 0.899
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.862
   RMS: 0.801
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.686
   RMS: 0.629
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 2.787
   RMS: 0.667
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.228
   RMS: 0.765
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.520
   RMS: 0.667
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.536
   RMS: 0.842
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.029
   RMS: 2.029
   RMS: 13.657
   RMS: 2.029
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.691
   RMS: 0.767
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.015
   RMS: 0.726
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.900
   RMS: 0.855
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.637
   RMS: 0.787
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.208
   RMS: 0.827
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.720
   RMS: 0.788
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.593
   RMS: 0.666
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.631
   RMS: 0.722
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.702
   RMS: 1.702
   RMS: 1.338
   RMS: 1.702
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 3.253
   RMS: 0.852
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 0.932
   RMS: 0.884
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.241
   RMS: 0.833
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.477
   RMS: 0.916
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 3.066
   RMS: 0.905
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.550
   RMS: 0.868
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.567
   RMS: 0.765
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 0.580
   RMS: 0.978
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 2.872
   RMS: 0.606
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.710
   RMS: 0.723
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.861
   RMS: 0.665
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.116
   RMS: 0.815
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.784
   RMS: 0.860
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.588
   RMS: 0.835
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.702
   RMS: 0.723
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.450
   RMS: 0.648
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.694
   RMS: 0.575
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.046
   RMS: 0.518
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.272
   RMS: 0.671
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.807
   RMS: 0.842
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.566
   RMS: 0.829
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.492
   RMS: 0.737
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.636
   RMS: 0.694
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.632
   RMS: 0.621
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.486
   RMS: 0.571
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.682
   RMS: 0.829
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.536
   RMS: 0.854
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.779
   RMS: 0.764
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.142
   RMS: 1.142
   RMS: 1.486
   RMS: 1.142
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.564
   RMS: 0.764
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.272
   RMS: 0.774
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.579
   RMS: 0.833
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.536
   RMS: 0.719
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.914
   RMS: 0.706
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.006
   RMS: 0.817
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.907
   RMS: 0.692
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.843
   RMS: 0.747
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.787
   RMS: 0.757
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.368
   RMS: 0.888
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.691
   RMS: 0.505
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.153
   RMS: 0.524
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.336
   RMS: 0.336
   RMS: 0.486
   RMS: 0.336
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.852
   RMS: 0.831
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.589
   RMS: 0.721
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.708
   RMS: 0.703
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.459
   RMS: 0.777
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.642
   RMS: 0.713
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 1.333
   RMS: 0.957
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.303
   RMS: 0.951
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.920
   RMS: 0.892
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.406
   RMS: 0.827
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 3.430
   RMS: 0.577
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.430
   RMS: 0.700
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 1.017
   RMS: 0.694
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.583
   RMS: 0.771
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.673
   RMS: 0.633
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 3.647
   RMS: 0.848
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.445
   RMS: 0.844
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.411
   RMS: 0.852
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.840
   RMS: 0.685
   Unrecognised keyword: pdb1etz_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.598
   RMS: 0.665
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.586
   RMS: 0.761
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.672
   RMS: 0.795
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.388
   RMS: 0.497
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.811
   RMS: 0.749
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.879
   RMS: 0.707
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.417
   RMS: 0.763
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.692
   RMS: 0.839
   Unrecognised keyword: pdb1etz_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.292
   RMS: 0.873
   Unrecognised keyword: pdb1etz_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 2.689
   RMS: 0.577
   Unrecognised keyword: pdb1etz_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 3.486
   RMS: 0.496
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1f11_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.522
   RMS: 0.733
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.529
   RMS: 0.916
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.674
   RMS: 0.449
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 3.827
   RMS: 0.417
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.349
   RMS: 0.665
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.773
   RMS: 0.772
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.667
   RMS: 0.853
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 1.686
   RMS: 1.009
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.543
   RMS: 0.755
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.848
   RMS: 5.848
   RMS: 16.442
   RMS: 5.848
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.797
   RMS: 0.638
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.876
   RMS: 0.772
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.628
   RMS: 0.955
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.654
   RMS: 0.705
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.661
   RMS: 0.864
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.340
   RMS: 0.881
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.551
   RMS: 0.628
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.515
   RMS: 0.634
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.932
   RMS: 0.672
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.870
   RMS: 0.848
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 1.460
   RMS: 0.959
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 1.019
   RMS: 0.643
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.789
   RMS: 0.660
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 4.301
   RMS: 0.720
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 0.465
   RMS: 0.968
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.705
   RMS: 0.731
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.482
   RMS: 0.813
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.427
   RMS: 0.871
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.897
   RMS: 0.788
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.840
   RMS: 0.629
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.795
   RMS: 0.880
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.051
   RMS: 1.051
   RMS: 1.110
   RMS: 1.051
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.617
   RMS: 0.785
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.497
   RMS: 0.903
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.757
   RMS: 0.866
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.119
   RMS: 0.910
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 3.643
   RMS: 0.652
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.625
   RMS: 0.661
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.436
   RMS: 0.682
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.664
   RMS: 0.659
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.073
   RMS: 1.073
   RMS: 0.544
   RMS: 1.073
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.632
   RMS: 0.724
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.458
   RMS: 0.620
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.731
   RMS: 0.619
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.347
   RMS: 0.607
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.960
   RMS: 0.782
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.762
   RMS: 0.676
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.972
   RMS: 0.681
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 2.962
   RMS: 0.648
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.233
   RMS: 0.897
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.796
   RMS: 0.747
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 3.730
   RMS: 0.750
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.123
   RMS: 2.123
   RMS: 13.650
   RMS: 2.123
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.621
   RMS: 0.886
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.014
   RMS: 0.894
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.815
   RMS: 0.762
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.485
   RMS: 0.947
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 1.023
   RMS: 1.047
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 0.703
   RMS: 0.989
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.711
   RMS: 0.829
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 0.674
   RMS: 0.934
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.781
   RMS: 1.781
   RMS: 1.213
   RMS: 1.781
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.505
   RMS: 0.717
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.074
   RMS: 0.757
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.118
   RMS: 0.900
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 3.631
   RMS: 0.714
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.349
   RMS: 0.769
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.763
   RMS: 0.750
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.744
   RMS: 0.698
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.645
   RMS: 0.851
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.080
   RMS: 0.422
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.004
   RMS: 0.898
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.968
   RMS: 0.827
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.317
   RMS: 0.748
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.821
   RMS: 0.768
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.087
   RMS: 1.087
   RMS: 0.541
   RMS: 1.087
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.642
   RMS: 0.877
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.338
   RMS: 0.469
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.437
   RMS: 0.415
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.763
   RMS: 0.518
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.130
   RMS: 0.786
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.904
   RMS: 0.722
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.744
   RMS: 0.747
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 0.490
   RMS: 0.936
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.722
   RMS: 0.813
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.827
   RMS: 0.752
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.533
   RMS: 0.735
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.958
   RMS: 0.772
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.806
   RMS: 0.680
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.710
   RMS: 0.935
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.413
   RMS: 0.941
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.558
   RMS: 0.612
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.369
   RMS: 0.694
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.670
   RMS: 0.705
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.296
   RMS: 0.645
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.958
   RMS: 0.642
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.136
   RMS: 0.700
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.686
   RMS: 0.840
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.790
   RMS: 0.891
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.702
   RMS: 0.925
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.479
   RMS: 0.749
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.519
   RMS: 0.641
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.396
   RMS: 0.578
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.599
   RMS: 0.582
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.726
   RMS: 0.707
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.443
   RMS: 0.574
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.662
   RMS: 0.750
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.405
   RMS: 0.830
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.728
   RMS: 0.652
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.601
   RMS: 0.860
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.521
   RMS: 0.817
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.082
   RMS: 0.722
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.369
   RMS: 0.698
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.696
   RMS: 0.758
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.310
   RMS: 0.587
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.947
   RMS: 0.873
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.469
   RMS: 0.627
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.705
   RMS: 0.813
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.861
   RMS: 0.720
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 3.639
   RMS: 0.686
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.583
   RMS: 0.709
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.622
   RMS: 0.628
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.559
   RMS: 0.756
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.507
   RMS: 0.935
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 0.596
   RMS: 0.961
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.428
   RMS: 0.577
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.819
   RMS: 0.983
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.826
   RMS: 0.894
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 0.523
   RMS: 0.981
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.696
   RMS: 0.758
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.541
   RMS: 0.733
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 2.867
   RMS: 0.606
   Unrecognised keyword: pdb1ezv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.742
   RMS: 0.736
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1f4w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.765
   RMS: 0.842
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.828
   RMS: 0.766
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 4.122
   RMS: 0.756
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.611
   RMS: 0.436
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 0.931
   RMS: 0.599
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.998
   RMS: 0.759
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.565
   RMS: 0.778
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.864
   RMS: 0.609
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.810
   RMS: 5.810
   RMS: 16.367
   RMS: 5.810
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.799
   RMS: 0.747
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.198
   RMS: 0.435
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.428
   RMS: 0.853
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.617
   RMS: 0.570
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.897
   RMS: 0.762
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.595
   RMS: 0.792
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.832
   RMS: 0.555
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.784
   RMS: 0.552
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.101
   RMS: 0.723
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.783
   RMS: 0.796
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.387
   RMS: 0.835
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.272
   RMS: 0.718
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.626
   RMS: 0.516
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 4.582
   RMS: 0.562
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.520
   RMS: 0.868
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.334
   RMS: 0.334
   RMS: 0.773
   RMS: 0.334
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.445
   RMS: 0.712
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.568
   RMS: 0.411
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 1.248
   RMS: 0.649
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.128
   RMS: 0.745
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.957
   RMS: 0.775
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 0.952
   RMS: 0.949
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.828
   RMS: 0.550
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.627
   RMS: 0.776
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.591
   RMS: 0.800
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.899
   RMS: 0.813
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 3.958
   RMS: 0.657
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.274
   RMS: 0.496
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.590
   RMS: 0.383
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 1.015
   RMS: 0.411
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 0.908
   RMS: 0.986
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.977
   RMS: 0.441
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.627
   RMS: 0.452
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.087
   RMS: 0.688
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.610
   RMS: 0.801
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 1.279
   RMS: 0.400
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.916
   RMS: 0.401
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 1.335
   RMS: 0.677
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.195
   RMS: 0.868
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.275
   RMS: 0.795
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.138
   RMS: 0.865
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 4.001
   RMS: 0.343
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.057
   RMS: 2.057
   RMS: 13.752
   RMS: 2.057
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.494
   RMS: 0.698
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.131
   RMS: 0.764
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 0.651
   RMS: 0.310
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.260
   RMS: 0.821
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.999
   RMS: 0.951
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.915
   RMS: 0.860
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.942
   RMS: 0.752
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.785
   RMS: 0.799
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.604
   RMS: 1.604
   RMS: 1.045
   RMS: 1.604
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 3.755
   RMS: 0.472
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.367
   RMS: 0.471
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.188
   RMS: 0.774
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 3.856
   RMS: 0.445
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 3.608
   RMS: 0.314
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 1.156
   RMS: 0.425
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.945
   RMS: 0.813
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.898
   RMS: 0.629
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 3.290
   RMS: 0.697
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.301
   RMS: 0.776
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.172
   RMS: 0.753
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 1.629
   RMS: 0.352
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 1.058
   RMS: 0.593
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 0.758
   RMS: 1.052
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.630
   RMS: 0.758
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.517
   RMS: 0.749
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.299
   RMS: 0.759
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.423
   RMS: 0.774
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 1.055
   RMS: 0.630
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.001
   RMS: 0.402
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 1.087
   RMS: 0.361
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.874
   RMS: 0.796
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.117
   RMS: 0.806
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.165
   RMS: 0.625
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.629
   RMS: 0.623
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 4.277
   RMS: 0.451
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.059
   RMS: 0.497
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.744
   RMS: 0.803
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.369
   RMS: 0.951
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.660
   RMS: 0.650
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.334
   RMS: 0.334
   RMS: 0.677
   RMS: 0.334
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.804
   RMS: 0.403
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.324
   RMS: 0.448
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.175
   RMS: 0.552
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.482
   RMS: 0.618
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.549
   RMS: 0.709
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.830
   RMS: 0.760
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.567
   RMS: 0.805
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.251
   RMS: 0.251
   RMS: 0.807
   RMS: 0.251
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.562
   RMS: 0.777
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 3.602
   RMS: 0.708
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.843
   RMS: 0.786
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.590
   RMS: 0.482
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.679
   RMS: 0.506
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.790
   RMS: 0.725
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.749
   RMS: 0.803
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.013
   RMS: 0.529
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.994
   RMS: 0.693
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.732
   RMS: 0.617
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 1.452
   RMS: 0.565
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 0.728
   RMS: 0.295
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 3.944
   RMS: 0.717
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.480
   RMS: 0.556
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.979
   RMS: 0.812
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.648
   RMS: 0.494
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.802
   RMS: 0.643
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 4.144
   RMS: 0.356
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 3.891
   RMS: 0.367
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 0.886
   RMS: 0.420
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.443
   RMS: 0.666
   Unrecognised keyword: pdb1f11_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.657
   RMS: 0.729
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.561
   RMS: 0.803
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.788
   RMS: 0.810
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.608
   RMS: 0.785
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.914
   RMS: 0.870
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.704
   RMS: 0.872
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.820
   RMS: 0.823
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 0.839
   RMS: 0.331
   Unrecognised keyword: pdb1f11_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.779
   RMS: 0.439
   Unrecognised keyword: pdb1f11_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 3.071
   RMS: 0.848
   Unrecognised keyword: pdb1f11_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 4.046
   RMS: 0.899
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1f58_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.589
   RMS: 0.816
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 3.505
   RMS: 0.855
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.590
   RMS: 0.848
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.154
   RMS: 1.154
   RMS: 0.728
   RMS: 1.154
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.669
   RMS: 0.486
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.192
   RMS: 1.192
   RMS: 1.539
   RMS: 1.192
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.621
   RMS: 0.522
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.913
   RMS: 5.913
   RMS: 16.745
   RMS: 5.913
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.071
   RMS: 0.784
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.732
   RMS: 0.911
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 0.778
   RMS: 0.377
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 0.745
   RMS: 1.099
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.670
   RMS: 0.448
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.601
   RMS: 0.421
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.828
   RMS: 0.726
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.806
   RMS: 0.726
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.871
   RMS: 0.762
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.871
   RMS: 0.408
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 1.748
   RMS: 0.342
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.091
   RMS: 0.693
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.137
   RMS: 0.778
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 4.034
   RMS: 0.859
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.822
   RMS: 0.483
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.657
   RMS: 0.855
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.757
   RMS: 0.407
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.656
   RMS: 0.861
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.856
   RMS: 0.817
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.653
   RMS: 0.660
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 1.078
   RMS: 0.361
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 1.182
   RMS: 0.501
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.641
   RMS: 0.905
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.708
   RMS: 0.495
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 0.934
   RMS: 0.378
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 1.429
   RMS: 0.341
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.370
   RMS: 0.870
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.875
   RMS: 0.772
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.361
   RMS: 0.886
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.628
   RMS: 0.829
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.652
   RMS: 0.726
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.624
   RMS: 0.869
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.598
   RMS: 0.798
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.698
   RMS: 0.768
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.441
   RMS: 0.774
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.902
   RMS: 0.913
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.051
   RMS: 0.765
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.828
   RMS: 0.564
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 2.708
   RMS: 0.950
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 1.365
   RMS: 0.352
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.698
   RMS: 0.859
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.493
   RMS: 0.863
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.973
   RMS: 1.973
   RMS: 13.776
   RMS: 1.973
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.716
   RMS: 0.495
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.182
   RMS: 0.380
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.760
   RMS: 0.877
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 1.707
   RMS: 0.422
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.358
   RMS: 0.430
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 0.902
   RMS: 0.362
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.597
   RMS: 0.488
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 0.754
   RMS: 0.331
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.810
   RMS: 1.810
   RMS: 1.404
   RMS: 1.810
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 3.207
   RMS: 0.961
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.974
   RMS: 0.871
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.416
   RMS: 0.462
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 3.402
   RMS: 1.023
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 3.026
   RMS: 0.888
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.671
   RMS: 0.898
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 0.527
   RMS: 0.960
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 0.804
   RMS: 0.932
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 2.809
   RMS: 0.876
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.767
   RMS: 0.487
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.987
   RMS: 0.398
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.106
   RMS: 0.793
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.939
   RMS: 0.819
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.745
   RMS: 0.536
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.714
   RMS: 0.337
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.483
   RMS: 0.887
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.671
   RMS: 0.868
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.016
   RMS: 0.830
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 1.401
   RMS: 0.503
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 0.928
   RMS: 0.934
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.639
   RMS: 0.859
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.739
   RMS: 0.372
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 0.883
   RMS: 0.418
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.839
   RMS: 0.490
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.463
   RMS: 0.497
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 3.694
   RMS: 0.869
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 0.602
   RMS: 0.954
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.860
   RMS: 0.324
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.156
   RMS: 1.156
   RMS: 1.409
   RMS: 1.156
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.707
   RMS: 0.892
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.456
   RMS: 0.822
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.451
   RMS: 0.947
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.586
   RMS: 0.713
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 1.154
   RMS: 0.738
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 1.205
   RMS: 0.965
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.358
   RMS: 0.358
   RMS: 1.003
   RMS: 0.358
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.303
   RMS: 0.303
   RMS: 0.949
   RMS: 0.303
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 1.882
   RMS: 0.372
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.538
   RMS: 0.871
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.838
   RMS: 0.715
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.119
   RMS: 0.724
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.649
   RMS: 0.699
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.702
   RMS: 0.855
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.716
   RMS: 0.785
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.826
   RMS: 0.519
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.520
   RMS: 0.474
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.784
   RMS: 0.644
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.518
   RMS: 0.997
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 3.262
   RMS: 0.999
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.984
   RMS: 0.924
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.564
   RMS: 0.871
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 3.433
   RMS: 0.459
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.481
   RMS: 0.782
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 1.145
   RMS: 0.367
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.773
   RMS: 0.781
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.771
   RMS: 0.495
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.616
   RMS: 0.902
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 3.385
   RMS: 0.900
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.457
   RMS: 0.891
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.747
   RMS: 0.818
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.722
   RMS: 0.443
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.692
   RMS: 0.389
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.738
   RMS: 0.369
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.488
   RMS: 0.853
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.977
   RMS: 0.404
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.886
   RMS: 0.705
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.595
   RMS: 0.462
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.783
   RMS: 0.813
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.368
   RMS: 0.889
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 2.624
   RMS: 0.823
   Unrecognised keyword: pdb1f4w_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.457
   RMS: 0.704
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1f8t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.226
   RMS: 0.226
   RMS: 3.615
   RMS: 0.226
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.720
   RMS: 0.716
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.076
   RMS: 0.904
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.972
   RMS: 0.854
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.992
   RMS: 1.023
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.560
   RMS: 0.753
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.894
   RMS: 5.894
   RMS: 16.702
   RMS: 5.894
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.696
   RMS: 0.531
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.073
   RMS: 0.810
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.803
   RMS: 0.885
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.055
   RMS: 0.834
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.101
   RMS: 0.839
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.893
   RMS: 0.802
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.530
   RMS: 0.635
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.536
   RMS: 0.640
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.544
   RMS: 0.413
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.611
   RMS: 0.786
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.640
   RMS: 0.867
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.836
   RMS: 0.495
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.935
   RMS: 0.627
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 4.283
   RMS: 0.794
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 0.708
   RMS: 0.985
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.396
   RMS: 0.745
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.602
   RMS: 0.769
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.680
   RMS: 0.892
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.182
   RMS: 0.857
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.453
   RMS: 0.460
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.791
   RMS: 0.788
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 0.815
   RMS: 0.987
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.903
   RMS: 0.825
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.791
   RMS: 0.909
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.640
   RMS: 0.797
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.182
   RMS: 0.831
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.386
   RMS: 0.662
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.950
   RMS: 0.695
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.589
   RMS: 0.693
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.939
   RMS: 0.675
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.108
   RMS: 1.108
   RMS: 0.763
   RMS: 1.108
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.935
   RMS: 0.785
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.864
   RMS: 0.605
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.971
   RMS: 0.558
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.648
   RMS: 0.413
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.140
   RMS: 0.828
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.801
   RMS: 0.716
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.962
   RMS: 0.646
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 2.815
   RMS: 0.595
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.927
   RMS: 0.807
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.680
   RMS: 0.686
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 3.727
   RMS: 0.822
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.134
   RMS: 2.134
   RMS: 14.116
   RMS: 2.134
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.584
   RMS: 0.842
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.211
   RMS: 0.853
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.118
   RMS: 0.806
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.326
   RMS: 0.856
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 0.992
   RMS: 0.956
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.564
   RMS: 0.911
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.998
   RMS: 0.786
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.381
   RMS: 0.859
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.763
   RMS: 1.763
   RMS: 1.626
   RMS: 1.763
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 3.278
   RMS: 0.750
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.372
   RMS: 0.802
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.052
   RMS: 0.905
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 3.696
   RMS: 0.801
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.159
   RMS: 0.827
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.779
   RMS: 0.770
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.975
   RMS: 0.664
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.001
   RMS: 0.914
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 2.895
   RMS: 0.326
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.184
   RMS: 0.766
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.614
   RMS: 0.777
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.577
   RMS: 0.791
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.248
   RMS: 0.805
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 0.479
   RMS: 0.985
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.438
   RMS: 0.800
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.676
   RMS: 0.389
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.789
   RMS: 0.296
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.937
   RMS: 0.407
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.024
   RMS: 0.728
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.592
   RMS: 0.769
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.040
   RMS: 0.784
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.647
   RMS: 0.852
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.864
   RMS: 0.790
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.869
   RMS: 0.665
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.498
   RMS: 0.646
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.738
   RMS: 0.796
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.935
   RMS: 0.726
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.474
   RMS: 0.855
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 1.842
   RMS: 1.042
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 0.503
   RMS: 0.588
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.525
   RMS: 0.697
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.901
   RMS: 0.764
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.675
   RMS: 0.585
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.928
   RMS: 0.597
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.451
   RMS: 0.739
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.812
   RMS: 0.793
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.498
   RMS: 0.819
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.641
   RMS: 0.876
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.559
   RMS: 0.782
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.681
   RMS: 0.481
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 3.118
   RMS: 0.468
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.425
   RMS: 0.393
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.685
   RMS: 0.731
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.525
   RMS: 0.545
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.588
   RMS: 0.707
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.823
   RMS: 0.836
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.488
   RMS: 0.601
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.630
   RMS: 0.848
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.369
   RMS: 0.854
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.403
   RMS: 0.823
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.762
   RMS: 0.724
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.366
   RMS: 0.623
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.700
   RMS: 0.538
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.686
   RMS: 0.808
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.856
   RMS: 0.625
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.404
   RMS: 0.695
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 3.825
   RMS: 0.766
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 3.619
   RMS: 0.707
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.769
   RMS: 0.765
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.038
   RMS: 0.587
   Unrecognised keyword: pdb1f58_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.429
   RMS: 0.725
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.523
   RMS: 0.886
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.994
   RMS: 0.920
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 0.438
   RMS: 0.384
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 0.654
   RMS: 0.923
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.754
   RMS: 0.717
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.434
   RMS: 0.891
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.105
   RMS: 0.792
   Unrecognised keyword: pdb1f58_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.158
   RMS: 0.770
   Unrecognised keyword: pdb1f58_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 2.636
   RMS: 0.436
   Unrecognised keyword: pdb1f58_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.642
   RMS: 0.590
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 3.725
   RMS: 0.700
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.831
   RMS: 0.879
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.435
   RMS: 0.843
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 4.137
   RMS: 0.985
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 3.578
   RMS: 0.751
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.893
   RMS: 5.893
   RMS: 17.936
   RMS: 5.893
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 4.085
   RMS: 0.518
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.295
   RMS: 0.799
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 4.101
   RMS: 0.906
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.882
   RMS: 0.814
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 3.608
   RMS: 0.846
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.796
   RMS: 0.811
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 3.825
   RMS: 0.644
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 3.853
   RMS: 0.646
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 3.612
   RMS: 0.452
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.936
   RMS: 0.798
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 4.724
   RMS: 0.886
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 3.564
   RMS: 0.499
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 4.253
   RMS: 0.646
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.444
   RMS: 0.791
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 4.035
   RMS: 0.994
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.755
   RMS: 0.754
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.991
   RMS: 0.754
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.788
   RMS: 0.906
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 3.368
   RMS: 0.858
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 3.337
   RMS: 0.488
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 3.928
   RMS: 0.801
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 4.202
   RMS: 1.000
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.627
   RMS: 0.811
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 3.789
   RMS: 0.904
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 4.090
   RMS: 0.823
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 4.579
   RMS: 0.846
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.728
   RMS: 0.687
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 4.225
   RMS: 0.702
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.632
   RMS: 0.706
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.414
   RMS: 0.688
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 3.580
   RMS: 1.112
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 3.476
   RMS: 0.774
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.821
   RMS: 0.611
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 3.367
   RMS: 0.589
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 3.729
   RMS: 0.450
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.259
   RMS: 0.834
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.893
   RMS: 0.733
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 3.196
   RMS: 0.654
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 1.761
   RMS: 0.544
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 4.081
   RMS: 0.840
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.350
   RMS: 0.692
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.361
   RMS: 0.812
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.126
   RMS: 2.126
   RMS: 14.130
   RMS: 2.126
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.938
   RMS: 0.838
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 4.063
   RMS: 0.852
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.923
   RMS: 0.809
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 4.653
   RMS: 0.873
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 4.357
   RMS: 0.985
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 3.842
   RMS: 0.936
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 3.479
   RMS: 0.765
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 3.771
   RMS: 0.885
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.762
   RMS: 1.762
   RMS: 4.415
   RMS: 1.762
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.878
   RMS: 0.754
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.286
   RMS: 0.802
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 4.148
   RMS: 0.917
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.884
   RMS: 0.786
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.851
   RMS: 0.819
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.293
   RMS: 0.809
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.449
   RMS: 0.674
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.794
   RMS: 0.908
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 1.345
   RMS: 0.310
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 3.253
   RMS: 0.806
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 3.673
   RMS: 0.775
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.101
   RMS: 0.802
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.831
   RMS: 0.799
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 3.778
   RMS: 1.024
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.867
   RMS: 0.825
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.364
   RMS: 0.364
   RMS: 3.779
   RMS: 0.364
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.243
   RMS: 0.243
   RMS: 3.982
   RMS: 0.243
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 4.345
   RMS: 0.368
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 4.311
   RMS: 0.763
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.821
   RMS: 0.782
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 3.395
   RMS: 0.801
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 3.728
   RMS: 0.871
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.519
   RMS: 0.798
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 3.367
   RMS: 0.659
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.663
   RMS: 0.636
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.727
   RMS: 0.822
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.362
   RMS: 0.736
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 3.970
   RMS: 0.875
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 4.042
   RMS: 1.005
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 3.765
   RMS: 0.578
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.647
   RMS: 0.711
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 3.536
   RMS: 0.760
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.903
   RMS: 0.611
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.794
   RMS: 0.622
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.433
   RMS: 0.718
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 4.201
   RMS: 0.794
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 3.947
   RMS: 0.857
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 4.776
   RMS: 0.888
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.547
   RMS: 0.787
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 4.026
   RMS: 0.507
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.252
   RMS: 0.482
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.612
   RMS: 0.422
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 3.965
   RMS: 0.767
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.820
   RMS: 0.569
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.963
   RMS: 0.706
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.597
   RMS: 0.844
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.545
   RMS: 0.620
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 2.918
   RMS: 0.864
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.135
   RMS: 0.883
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.252
   RMS: 0.817
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 3.629
   RMS: 0.715
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.212
   RMS: 0.673
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 3.766
   RMS: 0.555
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 4.073
   RMS: 0.823
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.846
   RMS: 0.647
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.816
   RMS: 0.711
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.154
   RMS: 0.764
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.346
   RMS: 0.710
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.439
   RMS: 0.749
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 4.011
   RMS: 0.547
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 3.866
   RMS: 0.739
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 3.920
   RMS: 0.883
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 3.700
   RMS: 0.932
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 3.700
   RMS: 0.415
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 3.980
   RMS: 0.944
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 4.011
   RMS: 0.769
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 3.599
   RMS: 0.901
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 3.719
   RMS: 0.810
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 3.067
   RMS: 0.774
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 1.999
   RMS: 0.393
   Unrecognised keyword: pdb1f8t_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.746
   RMS: 0.632
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fbi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.851
   RMS: 0.577
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.627
   RMS: 0.745
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.674
   RMS: 0.792
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.472
   RMS: 0.600
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.822
   RMS: 5.822
   RMS: 16.461
   RMS: 5.822
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.823
   RMS: 0.753
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.723
   RMS: 0.466
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.786
   RMS: 0.882
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.522
   RMS: 0.560
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.608
   RMS: 0.770
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.365
   RMS: 0.803
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.643
   RMS: 0.521
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 0.623
   RMS: 0.502
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.912
   RMS: 0.708
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.917
   RMS: 0.819
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.504
   RMS: 0.888
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.894
   RMS: 0.675
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.793
   RMS: 0.531
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 4.189
   RMS: 0.514
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.534
   RMS: 0.870
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.738
   RMS: 0.436
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.575
   RMS: 0.742
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.432
   RMS: 0.531
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.747
   RMS: 0.537
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.800
   RMS: 0.676
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.824
   RMS: 0.786
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 1.193
   RMS: 0.975
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.421
   RMS: 0.533
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.384
   RMS: 0.778
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.793
   RMS: 0.807
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.205
   RMS: 0.835
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.561
   RMS: 0.611
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.712
   RMS: 0.520
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.312
   RMS: 0.415
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.517
   RMS: 0.375
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 0.565
   RMS: 1.009
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.529
   RMS: 0.492
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.406
   RMS: 0.448
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.635
   RMS: 0.692
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.360
   RMS: 0.729
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.759
   RMS: 0.488
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.727
   RMS: 0.444
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.845
   RMS: 0.672
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 2.952
   RMS: 0.812
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.248
   RMS: 0.839
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.716
   RMS: 0.812
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 3.653
   RMS: 0.440
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.073
   RMS: 2.073
   RMS: 13.548
   RMS: 2.073
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.614
   RMS: 0.705
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.004
   RMS: 0.798
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.798
   RMS: 0.402
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.521
   RMS: 0.877
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.099
   RMS: 0.998
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.748
   RMS: 0.909
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.608
   RMS: 0.742
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.645
   RMS: 0.827
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.645
   RMS: 1.645
   RMS: 1.144
   RMS: 1.645
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 3.418
   RMS: 0.459
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.944
   RMS: 0.444
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.130
   RMS: 0.829
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 3.566
   RMS: 0.439
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 3.233
   RMS: 0.497
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.714
   RMS: 0.475
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.612
   RMS: 0.766
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.570
   RMS: 0.532
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.008
   RMS: 0.680
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.866
   RMS: 0.793
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.988
   RMS: 0.756
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.255
   RMS: 0.445
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.787
   RMS: 0.564
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 0.577
   RMS: 1.081
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.688
   RMS: 0.804
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.313
   RMS: 0.733
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.494
   RMS: 0.735
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.919
   RMS: 0.780
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 1.161
   RMS: 0.668
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.886
   RMS: 0.445
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.671
   RMS: 0.463
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.560
   RMS: 0.830
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.636
   RMS: 0.804
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.682
   RMS: 0.649
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.495
   RMS: 0.616
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 3.852
   RMS: 0.484
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.636
   RMS: 0.483
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.809
   RMS: 0.870
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.343
   RMS: 0.857
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.412
   RMS: 0.560
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.309
   RMS: 0.404
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 0.593
   RMS: 0.442
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.320
   RMS: 0.489
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.843
   RMS: 0.543
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.961
   RMS: 0.556
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.748
   RMS: 0.750
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.832
   RMS: 0.797
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.743
   RMS: 0.848
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.377
   RMS: 0.437
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.546
   RMS: 0.752
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.299
   RMS: 0.660
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.551
   RMS: 0.719
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.878
   RMS: 0.500
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.515
   RMS: 0.479
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.813
   RMS: 0.714
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.403
   RMS: 0.808
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.718
   RMS: 0.556
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 1.430
   RMS: 0.681
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 3.401
   RMS: 0.587
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 1.017
   RMS: 0.459
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.262
   RMS: 0.403
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.585
   RMS: 0.706
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.227
   RMS: 0.489
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.989
   RMS: 0.815
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.331
   RMS: 0.470
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.736
   RMS: 0.699
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 3.772
   RMS: 0.448
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 3.562
   RMS: 0.389
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.475
   RMS: 0.448
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.657
   RMS: 0.659
   Unrecognised keyword: pdb1fai_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.575
   RMS: 0.708
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.552
   RMS: 0.853
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.493
   RMS: 0.841
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.388
   RMS: 0.756
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.851
   RMS: 0.872
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.852
   RMS: 0.900
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.476
   RMS: 0.863
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.505
   RMS: 0.398
   Unrecognised keyword: pdb1fai_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 1.425
   RMS: 0.440
   Unrecognised keyword: pdb1fai_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 2.861
   RMS: 0.799
   Unrecognised keyword: pdb1fai_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.644
   RMS: 0.833
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fgv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.069
   RMS: 1.069
   RMS: 1.057
   RMS: 1.069
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.483
   RMS: 0.942
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.966
   RMS: 0.895
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.844
   RMS: 5.844
   RMS: 16.572
   RMS: 5.844
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 1.287
   RMS: 0.999
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.912
   RMS: 0.674
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.188
   RMS: 1.188
   RMS: 1.088
   RMS: 1.188
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.911
   RMS: 0.422
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.098
   RMS: 1.098
   RMS: 0.867
   RMS: 1.098
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.130
   RMS: 1.130
   RMS: 0.847
   RMS: 1.130
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.112
   RMS: 0.776
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.066
   RMS: 0.782
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.250
   RMS: 0.961
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.088
   RMS: 1.088
   RMS: 1.291
   RMS: 1.088
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.193
   RMS: 1.193
   RMS: 1.435
   RMS: 1.193
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.350
   RMS: 0.892
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.234
   RMS: 0.835
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 4.266
   RMS: 0.676
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.182
   RMS: 1.182
   RMS: 0.961
   RMS: 1.182
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.047
   RMS: 0.671
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 1.068
   RMS: 1.019
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.959
   RMS: 0.721
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.998
   RMS: 0.819
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.143
   RMS: 0.943
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.110
   RMS: 1.110
   RMS: 1.326
   RMS: 1.110
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.276
   RMS: 1.276
   RMS: 1.505
   RMS: 1.276
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.868
   RMS: 0.745
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 0.926
   RMS: 1.089
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.105
   RMS: 1.105
   RMS: 1.235
   RMS: 1.105
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 1.505
   RMS: 1.146
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.700
   RMS: 0.783
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.957
   RMS: 0.753
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.809
   RMS: 0.531
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.908
   RMS: 0.600
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.307
   RMS: 1.307
   RMS: 0.916
   RMS: 1.307
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.904
   RMS: 0.561
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.727
   RMS: 0.676
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 1.021
   RMS: 0.958
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.739
   RMS: 0.911
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.135
   RMS: 0.546
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 1.230
   RMS: 0.684
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.190
   RMS: 0.902
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 3.001
   RMS: 0.932
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.130
   RMS: 1.130
   RMS: 1.564
   RMS: 1.130
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.121
   RMS: 0.987
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.701
   RMS: 0.573
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.192
   RMS: 2.192
   RMS: 13.380
   RMS: 2.192
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 1.060
   RMS: 1.033
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 0.834
   RMS: 1.081
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.963
   RMS: 0.582
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.171
   RMS: 1.171
   RMS: 1.850
   RMS: 1.171
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.315
   RMS: 1.315
   RMS: 1.516
   RMS: 1.315
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.218
   RMS: 1.218
   RMS: 1.187
   RMS: 1.218
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 0.929
   RMS: 1.035
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.124
   RMS: 1.124
   RMS: 1.150
   RMS: 1.124
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.755
   RMS: 1.755
   RMS: 1.269
   RMS: 1.755
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 3.511
   RMS: 0.492
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.164
   RMS: 0.662
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.109
   RMS: 1.109
   RMS: 1.605
   RMS: 1.109
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 3.586
   RMS: 0.376
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 3.321
   RMS: 0.643
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 1.065
   RMS: 0.525
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 0.784
   RMS: 0.973
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.612
   RMS: 0.759
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 3.113
   RMS: 0.846
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.071
   RMS: 1.071
   RMS: 0.960
   RMS: 1.071
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 1.409
   RMS: 1.020
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.191
   RMS: 0.647
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.603
   RMS: 0.785
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.398
   RMS: 1.398
   RMS: 1.095
   RMS: 1.398
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 1.168
   RMS: 1.113
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.793
   RMS: 0.872
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.927
   RMS: 0.901
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.153
   RMS: 0.918
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.528
   RMS: 0.932
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 1.108
   RMS: 0.559
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.813
   RMS: 0.630
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.140
   RMS: 1.140
   RMS: 0.969
   RMS: 1.140
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.065
   RMS: 1.065
   RMS: 1.166
   RMS: 1.065
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.143
   RMS: 0.978
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.994
   RMS: 0.915
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.977
   RMS: 0.614
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.843
   RMS: 0.493
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.174
   RMS: 1.174
   RMS: 1.165
   RMS: 1.174
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 1.257
   RMS: 1.007
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.039
   RMS: 0.791
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.830
   RMS: 0.594
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.853
   RMS: 0.467
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.839
   RMS: 0.798
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.297
   RMS: 0.803
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.251
   RMS: 0.720
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 1.185
   RMS: 1.049
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 1.274
   RMS: 1.113
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.136
   RMS: 1.136
   RMS: 1.703
   RMS: 1.136
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.944
   RMS: 0.613
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 0.962
   RMS: 1.037
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 3.440
   RMS: 0.835
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.066
   RMS: 0.942
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.014
   RMS: 0.625
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.023
   RMS: 0.770
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.058
   RMS: 0.945
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 0.818
   RMS: 1.077
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.232
   RMS: 0.849
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.723
   RMS: 0.872
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 3.548
   RMS: 0.639
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 1.091
   RMS: 0.679
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.884
   RMS: 0.577
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.775
   RMS: 0.966
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.797
   RMS: 0.797
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.109
   RMS: 1.109
   RMS: 1.435
   RMS: 1.109
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.866
   RMS: 0.771
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.100
   RMS: 1.005
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 3.849
   RMS: 0.568
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 3.619
   RMS: 0.541
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.855
   RMS: 0.584
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.930
   RMS: 0.967
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 1.059
   RMS: 0.989
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.137
   RMS: 1.137
   RMS: 0.991
   RMS: 1.137
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.148
   RMS: 1.148
   RMS: 1.037
   RMS: 1.148
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.896
   RMS: 0.917
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.187
   RMS: 1.187
   RMS: 1.190
   RMS: 1.187
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.103
   RMS: 1.103
   RMS: 1.166
   RMS: 1.103
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.124
   RMS: 1.124
   RMS: 1.044
   RMS: 1.124
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.881
   RMS: 0.602
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.723
   RMS: 0.596
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.051
   RMS: 1.051
   RMS: 2.903
   RMS: 1.051
   Unrecognised keyword: pdb1fbi_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.084
   RMS: 1.084
   RMS: 3.715
   RMS: 1.084
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.044
   RMS: 1.044
   RMS: 1.731
   RMS: 1.044
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.819
   RMS: 0.412
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.902
   RMS: 5.902
   RMS: 16.845
   RMS: 5.902
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.237
   RMS: 0.803
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.719
   RMS: 0.790
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 1.051
   RMS: 0.526
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 0.835
   RMS: 0.997
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.597
   RMS: 0.398
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.632
   RMS: 0.477
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.001
   RMS: 0.662
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.010
   RMS: 0.645
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.055
   RMS: 0.852
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.133
   RMS: 0.468
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 2.042
   RMS: 0.522
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.130
   RMS: 0.765
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.233
   RMS: 0.712
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.869
   RMS: 0.720
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 1.053
   RMS: 0.423
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.005
   RMS: 0.780
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 0.926
   RMS: 0.435
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.811
   RMS: 0.787
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.720
   RMS: 0.714
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.882
   RMS: 0.738
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.059
   RMS: 0.483
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.517
   RMS: 0.621
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.792
   RMS: 0.840
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.704
   RMS: 0.501
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 1.194
   RMS: 0.495
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.640
   RMS: 0.445
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.333
   RMS: 0.825
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.162
   RMS: 0.666
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.658
   RMS: 0.842
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.527
   RMS: 0.746
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.834
   RMS: 0.636
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.522
   RMS: 0.773
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.770
   RMS: 0.748
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.531
   RMS: 0.763
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.685
   RMS: 0.864
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.679
   RMS: 0.828
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.041
   RMS: 0.648
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.839
   RMS: 0.586
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 2.609
   RMS: 0.923
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 1.585
   RMS: 0.477
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.746
   RMS: 0.873
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.324
   RMS: 0.783
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.028
   RMS: 2.028
   RMS: 13.700
   RMS: 2.028
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 1.018
   RMS: 0.433
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.473
   RMS: 0.426
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.994
   RMS: 0.798
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 1.948
   RMS: 0.591
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 1.561
   RMS: 0.616
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.150
   RMS: 0.529
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.366
   RMS: 0.360
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 1.035
   RMS: 0.486
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.831
   RMS: 1.831
   RMS: 1.554
   RMS: 1.831
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 3.143
   RMS: 0.926
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.751
   RMS: 0.750
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 1.466
   RMS: 0.428
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.202
   RMS: 0.941
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.039
   RMS: 0.821
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.754
   RMS: 0.867
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 0.725
   RMS: 0.949
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.894
   RMS: 0.790
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 2.819
   RMS: 0.848
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.836
   RMS: 0.630
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 1.130
   RMS: 0.486
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.969
   RMS: 0.697
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.040
   RMS: 0.747
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.955
   RMS: 0.738
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.972
   RMS: 0.468
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.670
   RMS: 0.901
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.789
   RMS: 0.862
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.285
   RMS: 0.848
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.539
   RMS: 0.658
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.326
   RMS: 0.847
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.684
   RMS: 0.777
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.776
   RMS: 0.491
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.830
   RMS: 0.540
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.717
   RMS: 0.491
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.683
   RMS: 0.490
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.627
   RMS: 0.838
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.840
   RMS: 0.947
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.149
   RMS: 0.468
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.498
   RMS: 1.035
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.889
   RMS: 0.784
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.641
   RMS: 0.749
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.685
   RMS: 0.874
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.781
   RMS: 0.664
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.334
   RMS: 0.659
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.097
   RMS: 0.813
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.244
   RMS: 0.426
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 1.209
   RMS: 0.443
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 2.277
   RMS: 0.492
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.637
   RMS: 0.771
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.110
   RMS: 0.789
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 3.134
   RMS: 0.746
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.778
   RMS: 0.758
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.162
   RMS: 0.853
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.943
   RMS: 0.738
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.122
   RMS: 0.450
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.528
   RMS: 0.412
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.828
   RMS: 0.629
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 1.290
   RMS: 0.983
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 3.203
   RMS: 0.939
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.816
   RMS: 0.763
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.429
   RMS: 0.777
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.452
   RMS: 0.628
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.616
   RMS: 0.696
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.388
   RMS: 0.483
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.795
   RMS: 0.740
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.031
   RMS: 0.600
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.443
   RMS: 0.794
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 3.224
   RMS: 0.816
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.665
   RMS: 0.812
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.924
   RMS: 0.780
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.994
   RMS: 0.440
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.020
   RMS: 0.467
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.578
   RMS: 0.449
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.727
   RMS: 0.898
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.259
   RMS: 0.445
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.129
   RMS: 0.841
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.709
   RMS: 0.579
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.787
   RMS: 0.727
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.391
   RMS: 0.814
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 2.623
   RMS: 0.858
   Unrecognised keyword: pdb1fgv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.299
   RMS: 0.834
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fl5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.971
   RMS: 0.994
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.860
   RMS: 5.860
   RMS: 16.311
   RMS: 5.860
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 2.269
   RMS: 1.089
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.713
   RMS: 0.756
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.175
   RMS: 1.175
   RMS: 1.576
   RMS: 1.175
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.248
   RMS: 0.852
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.095
   RMS: 1.095
   RMS: 1.392
   RMS: 1.095
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.098
   RMS: 1.098
   RMS: 1.486
   RMS: 1.098
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 2.173
   RMS: 0.915
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 2.127
   RMS: 0.904
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 2.200
   RMS: 1.023
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.126
   RMS: 1.126
   RMS: 1.984
   RMS: 1.126
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.174
   RMS: 1.174
   RMS: 2.406
   RMS: 1.174
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.053
   RMS: 1.053
   RMS: 2.448
   RMS: 1.053
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 2.085
   RMS: 0.883
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 4.262
   RMS: 0.878
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.204
   RMS: 1.204
   RMS: 1.944
   RMS: 1.204
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.892
   RMS: 0.821
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 1.911
   RMS: 1.031
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.804
   RMS: 0.847
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 1.761
   RMS: 0.971
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 2.124
   RMS: 1.040
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 2.365
   RMS: 1.120
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.234
   RMS: 1.234
   RMS: 2.232
   RMS: 1.234
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.515
   RMS: 0.849
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 1.814
   RMS: 1.082
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.156
   RMS: 1.156
   RMS: 2.009
   RMS: 1.156
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.168
   RMS: 1.168
   RMS: 2.266
   RMS: 1.168
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 4.202
   RMS: 1.035
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.500
   RMS: 0.860
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.553
   RMS: 0.821
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.722
   RMS: 0.785
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.285
   RMS: 1.285
   RMS: 1.877
   RMS: 1.285
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.697
   RMS: 0.844
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.490
   RMS: 0.808
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 1.846
   RMS: 1.006
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 1.615
   RMS: 1.038
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.938
   RMS: 0.834
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 2.326
   RMS: 0.806
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.080
   RMS: 1.080
   RMS: 2.042
   RMS: 1.080
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.091
   RMS: 1.091
   RMS: 3.411
   RMS: 1.091
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.136
   RMS: 1.136
   RMS: 2.658
   RMS: 1.136
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.101
   RMS: 1.101
   RMS: 2.095
   RMS: 1.101
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 3.831
   RMS: 0.820
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.218
   RMS: 2.218
   RMS: 13.190
   RMS: 2.218
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.809
   RMS: 0.994
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.118
   RMS: 1.118
   RMS: 2.020
   RMS: 1.118
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.001
   RMS: 0.803
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.171
   RMS: 1.171
   RMS: 2.612
   RMS: 1.171
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.263
   RMS: 1.263
   RMS: 2.463
   RMS: 1.263
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.241
   RMS: 1.241
   RMS: 2.275
   RMS: 1.241
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.503
   RMS: 0.994
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.175
   RMS: 1.175
   RMS: 2.087
   RMS: 1.175
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.733
   RMS: 1.733
   RMS: 1.370
   RMS: 1.733
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.878
   RMS: 0.879
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.693
   RMS: 0.866
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.149
   RMS: 1.149
   RMS: 2.686
   RMS: 1.149
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 3.533
   RMS: 0.823
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 3.573
   RMS: 0.837
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.979
   RMS: 0.913
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.105
   RMS: 1.105
   RMS: 1.417
   RMS: 1.105
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.795
   RMS: 0.948
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.390
   RMS: 0.965
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.110
   RMS: 1.110
   RMS: 1.575
   RMS: 1.110
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.130
   RMS: 1.130
   RMS: 2.424
   RMS: 1.130
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.667
   RMS: 0.820
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.689
   RMS: 0.960
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.379
   RMS: 1.379
   RMS: 2.135
   RMS: 1.379
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.141
   RMS: 1.141
   RMS: 1.942
   RMS: 1.141
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 1.495
   RMS: 1.008
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 1.524
   RMS: 1.023
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 1.720
   RMS: 1.050
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.091
   RMS: 1.091
   RMS: 2.546
   RMS: 1.091
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 2.215
   RMS: 0.823
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.603
   RMS: 0.806
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.163
   RMS: 1.163
   RMS: 2.103
   RMS: 1.163
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.189
   RMS: 1.189
   RMS: 2.197
   RMS: 1.189
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 2.165
   RMS: 0.998
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 1.702
   RMS: 0.959
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 4.464
   RMS: 0.931
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.561
   RMS: 0.853
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.170
   RMS: 1.170
   RMS: 2.172
   RMS: 1.170
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 0.744
   RMS: 1.025
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.915
   RMS: 0.860
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.783
   RMS: 0.779
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.259
   RMS: 0.818
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.623
   RMS: 0.862
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 2.315
   RMS: 0.879
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.942
   RMS: 0.862
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 1.979
   RMS: 1.096
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.144
   RMS: 1.144
   RMS: 2.259
   RMS: 1.144
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.168
   RMS: 1.168
   RMS: 2.634
   RMS: 1.168
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.891
   RMS: 0.791
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 1.928
   RMS: 1.081
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 3.806
   RMS: 1.005
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.061
   RMS: 1.061
   RMS: 2.044
   RMS: 1.061
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.593
   RMS: 0.902
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.954
   RMS: 0.896
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 2.134
   RMS: 1.021
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.102
   RMS: 1.102
   RMS: 1.633
   RMS: 1.102
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 2.224
   RMS: 0.936
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 2.581
   RMS: 0.990
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.705
   RMS: 0.941
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.722
   RMS: 0.880
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.722
   RMS: 0.783
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 4.278
   RMS: 1.099
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.539
   RMS: 0.853
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.177
   RMS: 1.177
   RMS: 2.409
   RMS: 1.177
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.822
   RMS: 0.846
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 2.128
   RMS: 1.074
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 4.016
   RMS: 0.758
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 3.696
   RMS: 0.765
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.547
   RMS: 0.846
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.205
   RMS: 0.987
   Unrecognised keyword: pdb1fig_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 1.997
   RMS: 1.062
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.154
   RMS: 1.154
   RMS: 1.871
   RMS: 1.154
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.174
   RMS: 1.174
   RMS: 1.600
   RMS: 1.174
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 1.783
   RMS: 1.007
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.184
   RMS: 1.184
   RMS: 2.247
   RMS: 1.184
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.197
   RMS: 1.197
   RMS: 1.842
   RMS: 1.197
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.153
   RMS: 1.153
   RMS: 2.021
   RMS: 1.153
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.417
   RMS: 0.825
   Unrecognised keyword: pdb1fig_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 2.737
   RMS: 0.891
   Unrecognised keyword: pdb1fig_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 3.408
   RMS: 1.050
   Unrecognised keyword: pdb1fig_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.167
   RMS: 1.167
   RMS: 3.998
   RMS: 1.167
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1fn4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.889
   RMS: 5.889
   RMS: 16.614
   RMS: 5.889
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.829
   RMS: 0.688
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.718
   RMS: 0.641
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.981
   RMS: 0.554
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.894
   RMS: 0.833
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.789
   RMS: 0.463
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.647
   RMS: 0.515
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 0.445
   RMS: 0.499
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.440
   RMS: 0.491
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.825
   RMS: 0.745
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 1.012
   RMS: 0.528
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.557
   RMS: 0.541
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.687
   RMS: 0.613
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.955
   RMS: 0.605
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 4.126
   RMS: 0.614
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.586
   RMS: 0.491
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.783
   RMS: 0.635
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.725
   RMS: 0.389
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.493
   RMS: 0.641
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.746
   RMS: 0.614
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.603
   RMS: 0.631
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.810
   RMS: 0.476
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 1.247
   RMS: 0.640
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.661
   RMS: 0.744
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.657
   RMS: 0.490
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.870
   RMS: 0.467
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 1.312
   RMS: 0.457
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.354
   RMS: 0.681
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.936
   RMS: 0.579
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.518
   RMS: 0.660
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.559
   RMS: 0.604
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.355
   RMS: 0.664
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.579
   RMS: 0.589
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.603
   RMS: 0.613
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.588
   RMS: 0.656
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.458
   RMS: 0.769
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.762
   RMS: 0.664
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.680
   RMS: 0.557
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 0.597
   RMS: 0.378
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 2.898
   RMS: 0.811
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.150
   RMS: 0.529
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.501
   RMS: 0.773
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 3.604
   RMS: 0.591
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.010
   RMS: 2.010
   RMS: 13.671
   RMS: 2.010
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.742
   RMS: 0.428
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.028
   RMS: 0.402
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.091
   RMS: 0.606
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.587
   RMS: 0.538
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.076
   RMS: 0.641
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.489
   RMS: 0.540
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.838
   RMS: 0.449
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.528
   RMS: 0.458
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.767
   RMS: 1.767
   RMS: 1.454
   RMS: 1.767
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 3.317
   RMS: 0.731
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 1.003
   RMS: 0.592
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 1.058
   RMS: 0.442
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.597
   RMS: 0.754
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.093
   RMS: 0.687
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.427
   RMS: 0.682
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.689
   RMS: 0.815
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.645
   RMS: 0.650
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 2.910
   RMS: 0.744
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 0.885
   RMS: 0.590
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.766
   RMS: 0.391
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 1.314
   RMS: 0.548
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.851
   RMS: 0.585
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.397
   RMS: 0.738
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.746
   RMS: 0.466
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.642
   RMS: 0.789
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.826
   RMS: 0.768
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.124
   RMS: 0.755
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.168
   RMS: 0.499
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.668
   RMS: 0.637
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.690
   RMS: 0.631
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.529
   RMS: 0.486
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.378
   RMS: 0.461
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.316
   RMS: 0.316
   RMS: 0.534
   RMS: 0.316
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.640
   RMS: 0.354
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.652
   RMS: 0.619
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.647
   RMS: 0.747
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.742
   RMS: 0.503
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 1.659
   RMS: 0.992
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.468
   RMS: 0.737
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.317
   RMS: 0.618
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.786
   RMS: 0.678
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.563
   RMS: 0.539
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.608
   RMS: 0.574
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.995
   RMS: 0.760
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 0.822
   RMS: 0.380
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.735
   RMS: 0.449
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.733
   RMS: 0.510
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.201
   RMS: 0.609
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.569
   RMS: 0.674
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 3.168
   RMS: 0.621
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.452
   RMS: 0.670
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.979
   RMS: 0.700
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.384
   RMS: 0.597
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.744
   RMS: 0.472
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.526
   RMS: 0.478
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.498
   RMS: 0.527
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.274
   RMS: 0.843
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.317
   RMS: 0.776
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.042
   RMS: 0.648
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.484
   RMS: 0.630
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 3.387
   RMS: 0.507
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.542
   RMS: 0.610
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.908
   RMS: 0.452
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.529
   RMS: 0.621
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.685
   RMS: 0.459
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 3.705
   RMS: 0.654
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.530
   RMS: 0.666
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.521
   RMS: 0.688
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.954
   RMS: 0.695
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.540
   RMS: 0.447
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.570
   RMS: 0.494
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.697
   RMS: 0.501
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.448
   RMS: 0.801
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.724
   RMS: 0.477
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.010
   RMS: 0.769
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.370
   RMS: 0.555
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.764
   RMS: 0.567
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.194
   RMS: 0.647
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 2.796
   RMS: 0.765
   Unrecognised keyword: pdb1fl5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 3.557
   RMS: 0.762
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1fns_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.866
   RMS: 5.866
   RMS: 16.482
   RMS: 5.866
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.879
   RMS: 5.879
   RMS: 16.745
   RMS: 5.879
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.935
   RMS: 5.935
   RMS: 16.564
   RMS: 5.935
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.839
   RMS: 5.839
   RMS: 16.386
   RMS: 5.839
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.868
   RMS: 5.868
   RMS: 16.603
   RMS: 5.868
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.890
   RMS: 5.890
   RMS: 16.440
   RMS: 5.890
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.895
   RMS: 5.895
   RMS: 16.570
   RMS: 5.895
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.878
   RMS: 5.878
   RMS: 16.518
   RMS: 5.878
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.930
   RMS: 5.930
   RMS: 17.070
   RMS: 5.930
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.931
   RMS: 5.931
   RMS: 16.767
   RMS: 5.931
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.869
   RMS: 5.869
   RMS: 15.599
   RMS: 5.869
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.855
   RMS: 5.855
   RMS: 16.822
   RMS: 5.855
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.827
   RMS: 5.827
   RMS: 16.376
   RMS: 5.827
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.921
   RMS: 5.921
   RMS: 17.832
   RMS: 5.921
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.898
   RMS: 5.898
   RMS: 16.307
   RMS: 5.898
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.881
   RMS: 5.881
   RMS: 16.721
   RMS: 5.881
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.884
   RMS: 5.884
   RMS: 16.474
   RMS: 5.884
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.848
   RMS: 5.848
   RMS: 16.379
   RMS: 5.848
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.904
   RMS: 5.904
   RMS: 16.790
   RMS: 5.904
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.846
   RMS: 5.846
   RMS: 16.953
   RMS: 5.846
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.916
   RMS: 5.916
   RMS: 16.746
   RMS: 5.916
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.966
   RMS: 5.966
   RMS: 16.605
   RMS: 5.966
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.824
   RMS: 5.824
   RMS: 16.408
   RMS: 5.824
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.861
   RMS: 5.861
   RMS: 16.497
   RMS: 5.861
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.926
   RMS: 5.926
   RMS: 16.516
   RMS: 5.926
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.923
   RMS: 5.923
   RMS: 16.321
   RMS: 5.923
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.888
   RMS: 5.888
   RMS: 17.805
   RMS: 5.888
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.873
   RMS: 5.873
   RMS: 16.247
   RMS: 5.873
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.848
   RMS: 5.848
   RMS: 16.557
   RMS: 5.848
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.865
   RMS: 5.865
   RMS: 16.718
   RMS: 5.865
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.883
   RMS: 5.883
   RMS: 16.433
   RMS: 5.883
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.854
   RMS: 5.854
   RMS: 16.760
   RMS: 5.854
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.852
   RMS: 5.852
   RMS: 16.564
   RMS: 5.852
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.842
   RMS: 5.842
   RMS: 16.722
   RMS: 5.842
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.859
   RMS: 5.859
   RMS: 16.612
   RMS: 5.859
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.853
   RMS: 5.853
   RMS: 16.754
   RMS: 5.853
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.831
   RMS: 5.831
   RMS: 16.497
   RMS: 5.831
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.932
   RMS: 5.932
   RMS: 16.944
   RMS: 5.932
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.879
   RMS: 5.879
   RMS: 17.381
   RMS: 5.879
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.911
   RMS: 5.911
   RMS: 16.639
   RMS: 5.911
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.956
   RMS: 5.956
   RMS: 16.960
   RMS: 5.956
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.846
   RMS: 5.846
   RMS: 17.538
   RMS: 5.846
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.750
   RMS: 5.750
   RMS: 12.961
   RMS: 5.750
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.906
   RMS: 5.906
   RMS: 16.542
   RMS: 5.906
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.876
   RMS: 5.876
   RMS: 16.018
   RMS: 5.876
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.877
   RMS: 5.877
   RMS: 16.448
   RMS: 5.877
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.916
   RMS: 5.916
   RMS: 16.315
   RMS: 5.916
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.935
   RMS: 5.935
   RMS: 16.320
   RMS: 5.935
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.955
   RMS: 5.955
   RMS: 16.552
   RMS: 5.955
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.889
   RMS: 5.889
   RMS: 16.807
   RMS: 5.889
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.899
   RMS: 5.899
   RMS: 16.663
   RMS: 5.899
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.901
   RMS: 5.901
   RMS: 15.812
   RMS: 5.901
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.876
   RMS: 5.876
   RMS: 17.747
   RMS: 5.876
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.893
   RMS: 5.893
   RMS: 16.779
   RMS: 5.893
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.894
   RMS: 5.894
   RMS: 16.387
   RMS: 5.894
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.848
   RMS: 5.848
   RMS: 17.411
   RMS: 5.848
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.856
   RMS: 5.856
   RMS: 17.375
   RMS: 5.856
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.906
   RMS: 5.906
   RMS: 16.815
   RMS: 5.906
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.805
   RMS: 5.805
   RMS: 16.515
   RMS: 5.805
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.911
   RMS: 5.911
   RMS: 16.618
   RMS: 5.911
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.821
   RMS: 5.821
   RMS: 16.996
   RMS: 5.821
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.909
   RMS: 5.909
   RMS: 16.785
   RMS: 5.909
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.921
   RMS: 5.921
   RMS: 17.093
   RMS: 5.921
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.890
   RMS: 5.890
   RMS: 16.892
   RMS: 5.890
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.888
   RMS: 5.888
   RMS: 16.440
   RMS: 5.888
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.924
   RMS: 5.924
   RMS: 16.523
   RMS: 5.924
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.909
   RMS: 5.909
   RMS: 16.695
   RMS: 5.909
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.891
   RMS: 5.891
   RMS: 16.406
   RMS: 5.891
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.844
   RMS: 5.844
   RMS: 16.392
   RMS: 5.844
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.871
   RMS: 5.871
   RMS: 16.322
   RMS: 5.871
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.908
   RMS: 5.908
   RMS: 16.499
   RMS: 5.908
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.863
   RMS: 5.863
   RMS: 16.552
   RMS: 5.863
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.856
   RMS: 5.856
   RMS: 16.660
   RMS: 5.856
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.911
   RMS: 5.911
   RMS: 16.692
   RMS: 5.911
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.885
   RMS: 5.885
   RMS: 16.595
   RMS: 5.885
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.873
   RMS: 5.873
   RMS: 16.805
   RMS: 5.873
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.872
   RMS: 5.872
   RMS: 16.723
   RMS: 5.872
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.909
   RMS: 5.909
   RMS: 17.912
   RMS: 5.909
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.828
   RMS: 5.828
   RMS: 16.545
   RMS: 5.828
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.954
   RMS: 5.954
   RMS: 16.651
   RMS: 5.954
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.919
   RMS: 5.919
   RMS: 15.834
   RMS: 5.919
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.835
   RMS: 5.835
   RMS: 16.510
   RMS: 5.835
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.872
   RMS: 5.872
   RMS: 16.699
   RMS: 5.872
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.829
   RMS: 5.829
   RMS: 16.582
   RMS: 5.829
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.840
   RMS: 5.840
   RMS: 16.459
   RMS: 5.840
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.793
   RMS: 5.793
   RMS: 16.267
   RMS: 5.793
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.755
   RMS: 5.755
   RMS: 16.295
   RMS: 5.755
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.922
   RMS: 5.922
   RMS: 16.323
   RMS: 5.922
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.915
   RMS: 5.915
   RMS: 16.621
   RMS: 5.915
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.875
   RMS: 5.875
   RMS: 15.787
   RMS: 5.875
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.891
   RMS: 5.891
   RMS: 16.706
   RMS: 5.891
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.825
   RMS: 5.825
   RMS: 16.255
   RMS: 5.825
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.926
   RMS: 5.926
   RMS: 17.442
   RMS: 5.926
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.905
   RMS: 5.905
   RMS: 16.768
   RMS: 5.905
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.872
   RMS: 5.872
   RMS: 16.486
   RMS: 5.872
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.841
   RMS: 5.841
   RMS: 16.472
   RMS: 5.841
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.909
   RMS: 5.909
   RMS: 16.651
   RMS: 5.909
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.900
   RMS: 5.900
   RMS: 16.470
   RMS: 5.900
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.922
   RMS: 5.922
   RMS: 16.939
   RMS: 5.922
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.901
   RMS: 5.901
   RMS: 17.118
   RMS: 5.901
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.894
   RMS: 5.894
   RMS: 17.305
   RMS: 5.894
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.877
   RMS: 5.877
   RMS: 16.818
   RMS: 5.877
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.835
   RMS: 5.835
   RMS: 16.658
   RMS: 5.835
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.939
   RMS: 5.939
   RMS: 17.671
   RMS: 5.939
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.834
   RMS: 5.834
   RMS: 16.550
   RMS: 5.834
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.938
   RMS: 5.938
   RMS: 16.526
   RMS: 5.938
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.841
   RMS: 5.841
   RMS: 16.419
   RMS: 5.841
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.883
   RMS: 5.883
   RMS: 16.772
   RMS: 5.883
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.852
   RMS: 5.852
   RMS: 17.677
   RMS: 5.852
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.837
   RMS: 5.837
   RMS: 17.524
   RMS: 5.837
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.837
   RMS: 5.837
   RMS: 16.549
   RMS: 5.837
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.812
   RMS: 5.812
   RMS: 16.318
   RMS: 5.812
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.893
   RMS: 5.893
   RMS: 16.572
   RMS: 5.893
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.931
   RMS: 5.931
   RMS: 16.507
   RMS: 5.931
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.928
   RMS: 5.928
   RMS: 16.687
   RMS: 5.928
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.865
   RMS: 5.865
   RMS: 16.635
   RMS: 5.865
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.946
   RMS: 5.946
   RMS: 16.667
   RMS: 5.946
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.913
   RMS: 5.913
   RMS: 16.711
   RMS: 5.913
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.915
   RMS: 5.915
   RMS: 16.739
   RMS: 5.915
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.841
   RMS: 5.841
   RMS: 16.452
   RMS: 5.841
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.846
   RMS: 5.846
   RMS: 17.164
   RMS: 5.846
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.906
   RMS: 5.906
   RMS: 17.308
   RMS: 5.906
   Unrecognised keyword: pdb1fn4_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 5.912
   RMS: 5.912
   RMS: 17.815
   RMS: 5.912
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1for_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.420
   RMS: 0.837
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.871
   RMS: 0.785
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 1.170
   RMS: 0.946
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.367
   RMS: 0.735
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.040
   RMS: 0.697
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.546
   RMS: 0.644
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.563
   RMS: 0.643
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.741
   RMS: 0.494
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.651
   RMS: 0.761
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 1.320
   RMS: 0.761
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.808
   RMS: 0.494
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.397
   RMS: 0.634
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 4.732
   RMS: 0.868
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.541
   RMS: 0.865
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.684
   RMS: 0.716
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.455
   RMS: 0.693
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.839
   RMS: 0.824
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.453
   RMS: 0.911
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.916
   RMS: 0.481
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.406
   RMS: 0.726
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.654
   RMS: 0.875
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.092
   RMS: 0.803
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.741
   RMS: 0.793
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.381
   RMS: 0.719
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.638
   RMS: 0.741
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.826
   RMS: 0.736
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.904
   RMS: 0.697
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.899
   RMS: 0.746
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.221
   RMS: 0.765
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 1.073
   RMS: 0.993
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.205
   RMS: 0.807
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.992
   RMS: 0.619
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 1.269
   RMS: 0.569
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.848
   RMS: 0.581
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.393
   RMS: 0.797
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.496
   RMS: 0.745
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.333
   RMS: 0.633
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 3.219
   RMS: 0.698
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.578
   RMS: 0.724
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.995
   RMS: 0.727
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 4.149
   RMS: 0.808
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.092
   RMS: 2.092
   RMS: 14.071
   RMS: 2.092
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.566
   RMS: 0.727
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.166
   RMS: 0.727
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.343
   RMS: 0.801
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.799
   RMS: 0.735
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.413
   RMS: 0.813
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.511
   RMS: 0.776
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.278
   RMS: 0.756
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.444
   RMS: 0.735
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.773
   RMS: 1.773
   RMS: 1.502
   RMS: 1.773
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 3.700
   RMS: 0.788
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.693
   RMS: 0.837
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.526
   RMS: 0.788
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 4.100
   RMS: 0.878
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 3.641
   RMS: 0.788
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.206
   RMS: 0.862
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.346
   RMS: 0.518
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.043
   RMS: 0.938
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 3.313
   RMS: 0.513
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.546
   RMS: 0.804
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.687
   RMS: 0.685
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.989
   RMS: 0.803
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.355
   RMS: 0.788
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.509
   RMS: 0.846
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.503
   RMS: 0.697
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.868
   RMS: 0.543
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.816
   RMS: 0.472
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.787
   RMS: 0.515
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.402
   RMS: 0.688
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.663
   RMS: 0.784
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.398
   RMS: 0.779
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.645
   RMS: 0.709
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.989
   RMS: 0.696
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 1.056
   RMS: 0.577
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.781
   RMS: 0.580
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 4.166
   RMS: 0.843
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.313
   RMS: 0.811
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.317
   RMS: 0.750
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.068
   RMS: 1.068
   RMS: 2.046
   RMS: 1.068
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.517
   RMS: 0.704
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.758
   RMS: 0.763
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.292
   RMS: 0.821
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.738
   RMS: 0.609
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.871
   RMS: 0.657
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.643
   RMS: 0.820
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.486
   RMS: 0.673
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.252
   RMS: 0.739
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.344
   RMS: 0.765
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.839
   RMS: 0.772
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.304
   RMS: 0.304
   RMS: 0.526
   RMS: 0.304
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.494
   RMS: 0.552
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.613
   RMS: 0.457
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.961
   RMS: 0.846
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.651
   RMS: 0.593
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.472
   RMS: 0.722
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.100
   RMS: 0.780
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.716
   RMS: 0.636
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 1.886
   RMS: 0.934
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.767
   RMS: 0.966
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.754
   RMS: 0.890
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.931
   RMS: 0.759
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 3.739
   RMS: 0.631
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.863
   RMS: 0.645
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.251
   RMS: 0.696
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.789
   RMS: 0.688
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 0.421
   RMS: 0.566
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 4.243
   RMS: 0.803
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 4.045
   RMS: 0.778
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.173
   RMS: 0.808
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 1.170
   RMS: 0.403
   Unrecognised keyword: pdb1fns_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.389
   RMS: 0.678
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.513
   RMS: 0.770
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.130
   RMS: 0.808
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.652
   RMS: 0.521
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.399
   RMS: 0.792
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.694
   RMS: 0.757
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.650
   RMS: 0.790
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.260
   RMS: 0.792
   Unrecognised keyword: pdb1fns_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.450
   RMS: 0.840
   Unrecognised keyword: pdb1fns_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 2.998
   RMS: 0.558
   Unrecognised keyword: pdb1fns_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 4.069
   RMS: 0.619
   Unrecognised keyword: pdb1for_chothia.pdb pdb1frg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.348
   RMS: 0.910
   Unrecognised keyword: pdb1for_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.878
   RMS: 0.603
   Unrecognised keyword: pdb1for_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.553
   RMS: 0.780
   Unrecognised keyword: pdb1for_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.791
   RMS: 0.833
   Unrecognised keyword: pdb1for_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.105
   RMS: 0.605
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.099
   RMS: 0.600
   Unrecognised keyword: pdb1for_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.208
   RMS: 0.821
   Unrecognised keyword: pdb1for_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.436
   RMS: 0.885
   Unrecognised keyword: pdb1for_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.956
   RMS: 0.924
   Unrecognised keyword: pdb1for_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.076
   RMS: 0.806
   Unrecognised keyword: pdb1for_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.438
   RMS: 0.610
   Unrecognised keyword: pdb1for_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.699
   RMS: 0.553
   Unrecognised keyword: pdb1for_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.123
   RMS: 0.888
   Unrecognised keyword: pdb1for_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.214
   RMS: 0.468
   Unrecognised keyword: pdb1for_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.208
   RMS: 0.799
   Unrecognised keyword: pdb1for_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.890
   RMS: 0.557
   Unrecognised keyword: pdb1for_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.268
   RMS: 0.579
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.919
   RMS: 0.805
   Unrecognised keyword: pdb1for_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.330
   RMS: 0.840
   Unrecognised keyword: pdb1for_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 1.760
   RMS: 1.011
   Unrecognised keyword: pdb1for_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.654
   RMS: 0.571
   Unrecognised keyword: pdb1for_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.883
   RMS: 0.814
   Unrecognised keyword: pdb1for_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.396
   RMS: 0.854
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.846
   RMS: 0.875
   Unrecognised keyword: pdb1for_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 3.192
   RMS: 0.634
   Unrecognised keyword: pdb1for_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.276
   RMS: 0.542
   Unrecognised keyword: pdb1for_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.710
   RMS: 0.465
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 0.274
   RMS: 0.442
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 0.713
   RMS: 0.979
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.370
   RMS: 0.535
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.725
   RMS: 0.554
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.372
   RMS: 0.715
   Unrecognised keyword: pdb1for_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.711
   RMS: 0.869
   Unrecognised keyword: pdb1for_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.335
   RMS: 0.488
   Unrecognised keyword: pdb1for_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.197
   RMS: 0.510
   Unrecognised keyword: pdb1for_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.512
   RMS: 0.732
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 2.734
   RMS: 0.916
   Unrecognised keyword: pdb1for_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.702
   RMS: 0.895
   Unrecognised keyword: pdb1for_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.703
   RMS: 0.852
   Unrecognised keyword: pdb1for_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 3.225
   RMS: 0.423
   Unrecognised keyword: pdb1for_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.086
   RMS: 2.086
   RMS: 13.315
   RMS: 2.086
   Unrecognised keyword: pdb1for_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.173
   RMS: 0.739
   Unrecognised keyword: pdb1for_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.281
   RMS: 0.838
   Unrecognised keyword: pdb1for_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 1.070
   RMS: 0.399
   Unrecognised keyword: pdb1for_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 2.151
   RMS: 0.906
   Unrecognised keyword: pdb1for_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 1.711
   RMS: 0.995
   Unrecognised keyword: pdb1for_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.170
   RMS: 0.943
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.589
   RMS: 0.773
   Unrecognised keyword: pdb1for_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.116
   RMS: 0.873
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.660
   RMS: 1.660
   RMS: 1.491
   RMS: 1.660
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 3.103
   RMS: 0.532
   Unrecognised keyword: pdb1for_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.415
   RMS: 0.524
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.643
   RMS: 0.853
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 3.187
   RMS: 0.484
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 2.797
   RMS: 0.479
   Unrecognised keyword: pdb1for_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.554
   RMS: 0.475
   Unrecognised keyword: pdb1for_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.385
   RMS: 0.844
   Unrecognised keyword: pdb1for_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.680
   RMS: 0.629
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 2.747
   RMS: 0.766
   Unrecognised keyword: pdb1for_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.347
   RMS: 0.853
   Unrecognised keyword: pdb1for_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.279
   RMS: 0.819
   Unrecognised keyword: pdb1for_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.689
   RMS: 0.399
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 0.701
   RMS: 0.586
   Unrecognised keyword: pdb1for_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 1.040
   RMS: 1.075
   Unrecognised keyword: pdb1for_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.233
   RMS: 0.844
   Unrecognised keyword: pdb1for_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.874
   RMS: 0.842
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.096
   RMS: 0.834
   Unrecognised keyword: pdb1for_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.538
   RMS: 0.838
   Unrecognised keyword: pdb1for_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.735
   RMS: 0.730
   Unrecognised keyword: pdb1for_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 1.220
   RMS: 0.442
   Unrecognised keyword: pdb1for_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.293
   RMS: 0.401
   Unrecognised keyword: pdb1for_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.976
   RMS: 0.870
   Unrecognised keyword: pdb1for_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.745
   RMS: 0.856
   Unrecognised keyword: pdb1for_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.631
   RMS: 0.698
   Unrecognised keyword: pdb1for_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.927
   RMS: 0.675
   Unrecognised keyword: pdb1for_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 3.428
   RMS: 0.478
   Unrecognised keyword: pdb1for_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.369
   RMS: 0.574
   Unrecognised keyword: pdb1for_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.327
   RMS: 0.896
   Unrecognised keyword: pdb1for_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.364
   RMS: 0.944
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.956
   RMS: 0.658
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.694
   RMS: 0.449
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.644
   RMS: 0.464
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.922
   RMS: 0.585
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 1.130
   RMS: 0.616
   Unrecognised keyword: pdb1for_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.657
   RMS: 0.621
   Unrecognised keyword: pdb1for_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.369
   RMS: 0.798
   Unrecognised keyword: pdb1for_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.354
   RMS: 0.839
   Unrecognised keyword: pdb1for_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 2.218
   RMS: 0.903
   Unrecognised keyword: pdb1for_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 0.639
   RMS: 0.409
   Unrecognised keyword: pdb1for_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.125
   RMS: 0.847
   Unrecognised keyword: pdb1for_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 3.058
   RMS: 0.765
   Unrecognised keyword: pdb1for_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.920
   RMS: 0.849
   Unrecognised keyword: pdb1for_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 1.351
   RMS: 0.477
   Unrecognised keyword: pdb1for_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 1.014
   RMS: 0.595
   Unrecognised keyword: pdb1for_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.271
   RMS: 0.776
   Unrecognised keyword: pdb1for_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.613
   RMS: 0.839
   Unrecognised keyword: pdb1for_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.997
   RMS: 0.627
   Unrecognised keyword: pdb1for_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.956
   RMS: 0.564
   Unrecognised keyword: pdb1for_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 3.073
   RMS: 0.496
   Unrecognised keyword: pdb1for_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.476
   RMS: 0.537
   Unrecognised keyword: pdb1for_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.631
   RMS: 0.424
   Unrecognised keyword: pdb1for_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 3.313
   RMS: 0.766
   Unrecognised keyword: pdb1for_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.753
   RMS: 0.565
   Unrecognised keyword: pdb1for_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.548
   RMS: 0.866
   Unrecognised keyword: pdb1for_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.792
   RMS: 0.540
   Unrecognised keyword: pdb1for_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.199
   RMS: 0.743
   Unrecognised keyword: pdb1for_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 3.340
   RMS: 0.420
   Unrecognised keyword: pdb1for_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.165
   RMS: 0.458
   Unrecognised keyword: pdb1for_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.511
   RMS: 0.522
   Unrecognised keyword: pdb1for_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.069
   RMS: 0.750
   Unrecognised keyword: pdb1for_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.118
   RMS: 0.773
   Unrecognised keyword: pdb1for_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.106
   RMS: 0.864
   Unrecognised keyword: pdb1for_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.736
   RMS: 0.872
   Unrecognised keyword: pdb1for_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.851
   RMS: 0.863
   Unrecognised keyword: pdb1for_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.305
   RMS: 0.910
   Unrecognised keyword: pdb1for_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.353
   RMS: 0.977
   Unrecognised keyword: pdb1for_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.870
   RMS: 0.870
   Unrecognised keyword: pdb1for_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.592
   RMS: 0.389
   Unrecognised keyword: pdb1for_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 1.334
   RMS: 0.503
   Unrecognised keyword: pdb1for_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 2.750
   RMS: 0.889
   Unrecognised keyword: pdb1for_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 3.222
   RMS: 0.914
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1fsk_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.126
   RMS: 1.126
   RMS: 0.762
   RMS: 1.126
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 1.017
   RMS: 0.447
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.692
   RMS: 0.399
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.895
   RMS: 0.743
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.864
   RMS: 0.734
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.036
   RMS: 0.807
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.653
   RMS: 0.438
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 1.603
   RMS: 0.320
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.363
   RMS: 0.735
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.791
   RMS: 0.766
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 4.597
   RMS: 0.868
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.748
   RMS: 0.487
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.706
   RMS: 0.852
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.545
   RMS: 0.428
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.817
   RMS: 0.839
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.372
   RMS: 0.832
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.120
   RMS: 0.713
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 1.025
   RMS: 0.394
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.852
   RMS: 0.459
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.954
   RMS: 0.906
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.835
   RMS: 0.432
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.599
   RMS: 0.461
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 0.913
   RMS: 0.348
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 3.947
   RMS: 0.911
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.461
   RMS: 0.777
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 0.704
   RMS: 0.907
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.148
   RMS: 0.852
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.048
   RMS: 0.638
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.090
   RMS: 0.893
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.742
   RMS: 0.821
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.219
   RMS: 0.756
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.677
   RMS: 0.878
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.445
   RMS: 0.913
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.103
   RMS: 0.792
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.381
   RMS: 0.648
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 3.189
   RMS: 1.016
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 1.335
   RMS: 0.370
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.170
   RMS: 0.908
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 4.037
   RMS: 0.895
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.998
   RMS: 1.998
   RMS: 13.998
   RMS: 1.998
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.555
   RMS: 0.455
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 1.362
   RMS: 0.365
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.718
   RMS: 0.885
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.269
   RMS: 0.402
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 1.043
   RMS: 0.340
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.996
   RMS: 0.353
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.019
   RMS: 0.546
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 0.810
   RMS: 0.312
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.820
   RMS: 1.820
   RMS: 1.229
   RMS: 1.820
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 3.744
   RMS: 0.990
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.511
   RMS: 0.889
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 1.320
   RMS: 0.405
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 3.884
   RMS: 1.048
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 3.629
   RMS: 0.866
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 1.224
   RMS: 0.949
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.078
   RMS: 0.941
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.129
   RMS: 0.933
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.290
   RMS: 0.891
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.370
   RMS: 0.542
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 1.119
   RMS: 0.432
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.748
   RMS: 0.829
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.294
   RMS: 0.815
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.875
   RMS: 0.526
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.305
   RMS: 0.305
   RMS: 0.563
   RMS: 0.305
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 0.553
   RMS: 0.916
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.369
   RMS: 0.892
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.349
   RMS: 0.886
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.164
   RMS: 0.562
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.099
   RMS: 0.942
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.228
   RMS: 0.875
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.943
   RMS: 0.401
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 1.247
   RMS: 0.429
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.306
   RMS: 0.541
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.611
   RMS: 0.549
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 4.295
   RMS: 0.910
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.190
   RMS: 0.990
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.288
   RMS: 0.288
   RMS: 0.776
   RMS: 0.288
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.172
   RMS: 1.172
   RMS: 1.537
   RMS: 1.172
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 0.782
   RMS: 0.908
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.772
   RMS: 0.865
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 0.872
   RMS: 0.985
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.536
   RMS: 0.711
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.323
   RMS: 0.742
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.665
   RMS: 0.978
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 0.641
   RMS: 0.349
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 0.870
   RMS: 0.326
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 1.695
   RMS: 0.354
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.920
   RMS: 0.882
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.748
   RMS: 0.726
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.575
   RMS: 0.771
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.874
   RMS: 0.794
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.477
   RMS: 0.881
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.766
   RMS: 0.805
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.813
   RMS: 0.575
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.911
   RMS: 0.465
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.026
   RMS: 0.636
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.989
   RMS: 0.989
   RMS: 2.104
   RMS: 0.989
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 3.741
   RMS: 1.026
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.567
   RMS: 0.955
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.851
   RMS: 0.905
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 3.930
   RMS: 0.562
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.624
   RMS: 0.784
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.983
   RMS: 0.354
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.919
   RMS: 0.783
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.823
   RMS: 0.523
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 4.168
   RMS: 0.933
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 3.909
   RMS: 0.931
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 0.973
   RMS: 0.932
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.571
   RMS: 0.795
   Unrecognised keyword: pdb1frg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.686
   RMS: 0.479
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.603
   RMS: 0.368
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 0.865
   RMS: 0.341
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 0.655
   RMS: 0.919
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.946
   RMS: 0.408
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.604
   RMS: 0.776
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.865
   RMS: 0.479
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.035
   RMS: 0.819
   Unrecognised keyword: pdb1frg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.860
   RMS: 0.905
   Unrecognised keyword: pdb1frg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.040
   RMS: 0.870
   Unrecognised keyword: pdb1frg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 4.043
   RMS: 0.786
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1fvc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.040
   RMS: 1.040
   RMS: 0.543
   RMS: 1.040
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 0.422
   RMS: 1.052
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.075
   RMS: 0.717
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.044
   RMS: 0.734
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 1.224
   RMS: 0.909
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 1.089
   RMS: 1.022
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.131
   RMS: 1.131
   RMS: 1.675
   RMS: 1.131
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.311
   RMS: 0.832
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.995
   RMS: 0.755
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 4.226
   RMS: 0.591
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.119
   RMS: 1.119
   RMS: 0.851
   RMS: 1.119
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 1.015
   RMS: 0.583
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 0.845
   RMS: 0.963
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.753
   RMS: 0.704
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.900
   RMS: 0.704
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.176
   RMS: 0.884
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 1.217
   RMS: 1.036
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.191
   RMS: 1.191
   RMS: 1.368
   RMS: 1.191
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.468
   RMS: 0.705
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 0.667
   RMS: 1.020
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 0.984
   RMS: 1.037
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.093
   RMS: 1.093
   RMS: 1.320
   RMS: 1.093
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.790
   RMS: 0.771
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.627
   RMS: 0.690
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.510
   RMS: 0.496
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.736
   RMS: 0.536
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.266
   RMS: 1.266
   RMS: 0.923
   RMS: 1.266
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.696
   RMS: 0.508
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.406
   RMS: 0.658
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.890
   RMS: 0.872
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.549
   RMS: 0.891
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.987
   RMS: 0.543
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 1.174
   RMS: 0.640
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.122
   RMS: 0.849
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 3.134
   RMS: 0.926
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.082
   RMS: 1.082
   RMS: 1.617
   RMS: 1.082
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.066
   RMS: 0.913
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.723
   RMS: 0.535
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.159
   RMS: 2.159
   RMS: 13.408
   RMS: 2.159
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 0.761
   RMS: 0.961
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.027
   RMS: 1.027
   RMS: 1.257
   RMS: 1.027
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.400
   RMS: 0.533
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.085
   RMS: 1.085
   RMS: 1.696
   RMS: 1.085
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.243
   RMS: 1.243
   RMS: 1.384
   RMS: 1.243
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.162
   RMS: 1.162
   RMS: 1.161
   RMS: 1.162
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.632
   RMS: 0.972
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 0.993
   RMS: 1.059
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.743
   RMS: 1.743
   RMS: 0.818
   RMS: 1.743
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 3.587
   RMS: 0.480
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.990
   RMS: 0.589
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.055
   RMS: 1.055
   RMS: 1.541
   RMS: 1.055
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 3.570
   RMS: 0.349
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 3.346
   RMS: 0.589
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.048
   RMS: 0.518
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.644
   RMS: 0.922
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.796
   RMS: 0.705
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.142
   RMS: 0.782
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 0.894
   RMS: 1.006
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 1.354
   RMS: 0.968
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 1.285
   RMS: 0.595
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.888
   RMS: 0.753
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.334
   RMS: 1.334
   RMS: 1.011
   RMS: 1.334
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.056
   RMS: 1.056
   RMS: 0.926
   RMS: 1.056
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.499
   RMS: 0.786
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.525
   RMS: 0.833
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.920
   RMS: 0.856
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.474
   RMS: 0.856
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 1.231
   RMS: 0.508
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.815
   RMS: 0.560
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.091
   RMS: 1.091
   RMS: 1.015
   RMS: 1.091
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 1.082
   RMS: 1.016
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.079
   RMS: 0.893
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.684
   RMS: 0.853
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 4.062
   RMS: 0.575
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.750
   RMS: 0.459
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.114
   RMS: 1.114
   RMS: 1.137
   RMS: 1.114
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 0.998
   RMS: 1.017
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.780
   RMS: 0.738
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.674
   RMS: 0.550
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.484
   RMS: 0.429
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.513
   RMS: 0.720
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.223
   RMS: 0.753
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.118
   RMS: 0.693
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.907
   RMS: 0.983
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 1.181
   RMS: 1.033
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.070
   RMS: 1.070
   RMS: 1.935
   RMS: 1.070
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.792
   RMS: 0.564
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 0.848
   RMS: 0.977
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.463
   RMS: 0.764
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.953
   RMS: 0.891
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.946
   RMS: 0.559
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.894
   RMS: 0.703
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.115
   RMS: 0.911
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 0.677
   RMS: 1.011
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.135
   RMS: 0.762
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.710
   RMS: 0.798
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 3.486
   RMS: 0.613
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.106
   RMS: 0.576
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.608
   RMS: 0.520
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 3.808
   RMS: 0.898
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.412
   RMS: 0.710
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 1.339
   RMS: 1.052
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.652
   RMS: 0.669
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 1.085
   RMS: 0.936
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.862
   RMS: 0.535
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 3.621
   RMS: 0.490
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.651
   RMS: 0.597
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.371
   RMS: 0.889
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 0.905
   RMS: 0.928
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 0.797
   RMS: 1.077
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 0.517
   RMS: 1.077
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.696
   RMS: 0.854
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.139
   RMS: 1.139
   RMS: 1.165
   RMS: 1.139
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.065
   RMS: 1.065
   RMS: 0.908
   RMS: 1.065
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 0.918
   RMS: 1.086
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.388
   RMS: 0.577
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 1.821
   RMS: 0.553
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 3.072
   RMS: 0.998
   Unrecognised keyword: pdb1fsk_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 3.791
   RMS: 1.023
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1fvd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.420
   RMS: 0.318
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 1.087
   RMS: 0.664
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.062
   RMS: 0.654
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.307
   RMS: 0.810
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 1.322
   RMS: 0.509
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 1.912
   RMS: 0.437
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.308
   RMS: 0.733
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 1.296
   RMS: 0.694
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.919
   RMS: 0.798
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.999
   RMS: 0.423
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.175
   RMS: 0.785
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.034
   RMS: 0.439
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.746
   RMS: 0.758
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.529
   RMS: 0.762
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.113
   RMS: 0.667
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 1.307
   RMS: 0.418
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.653
   RMS: 0.596
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.606
   RMS: 0.792
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.813
   RMS: 0.419
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 1.258
   RMS: 0.490
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 1.649
   RMS: 0.397
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.523
   RMS: 0.840
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.952
   RMS: 0.676
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.613
   RMS: 0.835
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.429
   RMS: 0.765
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.691
   RMS: 0.579
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.363
   RMS: 0.818
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.479
   RMS: 0.737
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.517
   RMS: 0.656
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.570
   RMS: 0.829
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.703
   RMS: 0.817
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 1.224
   RMS: 0.699
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.818
   RMS: 0.592
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 2.908
   RMS: 0.921
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 1.783
   RMS: 0.489
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.916
   RMS: 0.872
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 3.421
   RMS: 0.788
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.954
   RMS: 1.954
   RMS: 13.348
   RMS: 1.954
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.035
   RMS: 0.408
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 1.353
   RMS: 0.405
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.681
   RMS: 0.795
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 2.044
   RMS: 0.528
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 1.610
   RMS: 0.480
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 1.192
   RMS: 0.428
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 0.459
   RMS: 0.442
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 1.120
   RMS: 0.422
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.737
   RMS: 1.737
   RMS: 1.216
   RMS: 1.737
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 3.386
   RMS: 0.924
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.548
   RMS: 0.799
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.646
   RMS: 0.414
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.298
   RMS: 0.951
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 3.112
   RMS: 0.788
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.736
   RMS: 0.850
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.410
   RMS: 0.869
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.743
   RMS: 0.869
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 2.958
   RMS: 0.821
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.633
   RMS: 0.585
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 1.339
   RMS: 0.444
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.855
   RMS: 0.720
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.724
   RMS: 0.766
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 1.034
   RMS: 0.581
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.111
   RMS: 0.412
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.672
   RMS: 0.892
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.801
   RMS: 0.841
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.249
   RMS: 0.842
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.698
   RMS: 0.574
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.330
   RMS: 0.838
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.413
   RMS: 0.760
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 0.987
   RMS: 0.420
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.887
   RMS: 0.424
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.905
   RMS: 0.477
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.816
   RMS: 0.490
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.784
   RMS: 0.811
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 0.608
   RMS: 0.939
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.273
   RMS: 0.417
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.088
   RMS: 1.088
   RMS: 1.098
   RMS: 1.088
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.961
   RMS: 0.792
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.657
   RMS: 0.762
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.405
   RMS: 0.888
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.695
   RMS: 0.645
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.273
   RMS: 0.660
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.884
   RMS: 0.802
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.176
   RMS: 0.392
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 1.339
   RMS: 0.384
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 2.204
   RMS: 0.458
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.674
   RMS: 0.785
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 1.036
   RMS: 0.690
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.320
   RMS: 0.768
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.971
   RMS: 0.747
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.134
   RMS: 0.813
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.929
   RMS: 0.702
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 1.214
   RMS: 0.475
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 0.436
   RMS: 0.352
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.072
   RMS: 0.624
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.407
   RMS: 0.911
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 3.300
   RMS: 0.931
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.626
   RMS: 0.840
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.487
   RMS: 0.782
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 3.646
   RMS: 0.596
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.533
   RMS: 0.689
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 1.518
   RMS: 0.401
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.738
   RMS: 0.706
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 1.211
   RMS: 0.507
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.560
   RMS: 0.812
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.341
   RMS: 0.840
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.473
   RMS: 0.821
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.651
   RMS: 0.711
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 1.059
   RMS: 0.365
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.989
   RMS: 0.413
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.404
   RMS: 0.421
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.800
   RMS: 0.867
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.305
   RMS: 0.417
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.222
   RMS: 0.788
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.893
   RMS: 0.515
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.362
   RMS: 0.716
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.698
   RMS: 0.847
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 2.937
   RMS: 0.823
   Unrecognised keyword: pdb1fvc_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 3.499
   RMS: 0.786
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1g9m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.800
   RMS: 0.705
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.769
   RMS: 0.701
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.128
   RMS: 0.756
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 1.044
   RMS: 0.478
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 1.628
   RMS: 0.381
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.175
   RMS: 0.683
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.962
   RMS: 0.733
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 4.185
   RMS: 0.819
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.671
   RMS: 0.514
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.903
   RMS: 0.812
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.700
   RMS: 0.411
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.536
   RMS: 0.808
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.769
   RMS: 0.785
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 1.007
   RMS: 0.602
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.033
   RMS: 0.417
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 1.327
   RMS: 0.537
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.497
   RMS: 0.819
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.605
   RMS: 0.415
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.935
   RMS: 0.500
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 1.284
   RMS: 0.384
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 3.661
   RMS: 0.871
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.635
   RMS: 0.726
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.447
   RMS: 0.868
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.574
   RMS: 0.779
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.599
   RMS: 0.642
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.519
   RMS: 0.841
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.320
   RMS: 0.754
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.676
   RMS: 0.689
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.382
   RMS: 0.783
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.890
   RMS: 0.850
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.981
   RMS: 0.754
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.929
   RMS: 0.573
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.013
   RMS: 0.916
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.500
   RMS: 0.482
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.885
   RMS: 0.830
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.658
   RMS: 0.829
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.932
   RMS: 1.932
   RMS: 13.481
   RMS: 1.932
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.743
   RMS: 0.417
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 1.167
   RMS: 0.373
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.627
   RMS: 0.824
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.687
   RMS: 0.473
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 1.246
   RMS: 0.443
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.929
   RMS: 0.416
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.595
   RMS: 0.450
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.856
   RMS: 0.371
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.773
   RMS: 1.773
   RMS: 1.064
   RMS: 1.773
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.521
   RMS: 0.935
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.907
   RMS: 0.823
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 1.354
   RMS: 0.461
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 3.537
   RMS: 0.967
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.302
   RMS: 0.815
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.780
   RMS: 0.886
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.599
   RMS: 0.865
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.698
   RMS: 0.913
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.072
   RMS: 0.798
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.863
   RMS: 0.540
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 1.151
   RMS: 0.413
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.203
   RMS: 0.770
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.791
   RMS: 0.804
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.781
   RMS: 0.533
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.816
   RMS: 0.399
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.374
   RMS: 0.864
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.492
   RMS: 0.803
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.902
   RMS: 0.792
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.381
   RMS: 0.555
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.106
   RMS: 0.861
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.645
   RMS: 0.817
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.746
   RMS: 0.376
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.802
   RMS: 0.417
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.904
   RMS: 0.479
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.612
   RMS: 0.466
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 3.954
   RMS: 0.853
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.715
   RMS: 0.948
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.978
   RMS: 0.394
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.081
   RMS: 1.081
   RMS: 1.197
   RMS: 1.081
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.700
   RMS: 0.829
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.473
   RMS: 0.793
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.493
   RMS: 0.917
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.381
   RMS: 0.673
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.068
   RMS: 0.674
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.014
   RMS: 0.853
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.821
   RMS: 0.371
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 1.038
   RMS: 0.409
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.898
   RMS: 0.402
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.555
   RMS: 0.832
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.713
   RMS: 0.645
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 3.408
   RMS: 0.701
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.782
   RMS: 0.692
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.859
   RMS: 0.824
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.634
   RMS: 0.750
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.928
   RMS: 0.481
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.384
   RMS: 0.423
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.911
   RMS: 0.633
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.577
   RMS: 0.915
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 3.464
   RMS: 0.961
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.953
   RMS: 0.878
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.352
   RMS: 0.817
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 3.729
   RMS: 0.540
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.283
   RMS: 0.718
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 1.187
   RMS: 0.373
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.546
   RMS: 0.754
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.955
   RMS: 0.479
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.790
   RMS: 0.854
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 3.565
   RMS: 0.878
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.486
   RMS: 0.859
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.462
   RMS: 0.707
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.759
   RMS: 0.405
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.667
   RMS: 0.404
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.374
   RMS: 0.417
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.578
   RMS: 0.812
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.026
   RMS: 0.426
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.966
   RMS: 0.736
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.692
   RMS: 0.491
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.459
   RMS: 0.759
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.687
   RMS: 0.877
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 2.966
   RMS: 0.770
   Unrecognised keyword: pdb1fvd_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 3.700
   RMS: 0.747
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rzj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.144
   RMS: 0.144
   RMS: 0.088
   RMS: 0.144
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 0.789
   RMS: 0.640
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.888
   RMS: 0.673
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.407
   RMS: 0.743
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.751
   RMS: 0.604
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.770
   RMS: 0.421
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 4.425
   RMS: 0.542
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.458
   RMS: 0.730
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.705
   RMS: 0.522
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 0.563
   RMS: 0.615
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.577
   RMS: 0.614
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.124
   RMS: 0.633
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.718
   RMS: 0.673
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.567
   RMS: 0.687
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.015
   RMS: 0.816
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.916
   RMS: 0.684
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.741
   RMS: 0.725
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.697
   RMS: 0.683
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.048
   RMS: 0.717
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.552
   RMS: 0.563
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.911
   RMS: 0.490
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.732
   RMS: 0.551
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.912
   RMS: 0.460
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.598
   RMS: 0.912
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.905
   RMS: 0.618
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.818
   RMS: 0.444
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.930
   RMS: 0.579
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.654
   RMS: 0.674
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 1.119
   RMS: 0.637
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.527
   RMS: 0.511
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.976
   RMS: 0.568
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.023
   RMS: 0.730
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.896
   RMS: 0.691
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.747
   RMS: 0.772
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 3.858
   RMS: 0.591
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.034
   RMS: 2.034
   RMS: 13.870
   RMS: 2.034
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.716
   RMS: 0.620
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.049
   RMS: 0.655
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.256
   RMS: 0.598
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.303
   RMS: 0.735
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.724
   RMS: 0.833
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.247
   RMS: 0.763
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 1.105
   RMS: 0.688
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.454
   RMS: 0.689
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.726
   RMS: 1.726
   RMS: 1.563
   RMS: 1.726
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 3.512
   RMS: 0.633
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 1.364
   RMS: 0.519
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.765
   RMS: 0.687
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 3.840
   RMS: 0.653
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 3.370
   RMS: 0.626
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.765
   RMS: 0.581
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 1.060
   RMS: 0.668
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.860
   RMS: 0.666
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 3.102
   RMS: 0.626
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 1.275
   RMS: 0.684
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.665
   RMS: 0.631
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 1.646
   RMS: 0.528
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.093
   RMS: 0.536
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 0.240
   RMS: 0.954
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.629
   RMS: 0.678
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.726
   RMS: 0.677
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.823
   RMS: 0.656
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.948
   RMS: 0.704
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.878
   RMS: 0.616
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 0.633
   RMS: 0.589
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.034
   RMS: 0.555
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.419
   RMS: 0.687
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.592
   RMS: 0.683
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.801
   RMS: 0.524
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.733
   RMS: 0.497
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.884
   RMS: 0.583
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 1.028
   RMS: 0.651
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.495
   RMS: 0.720
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 1.880
   RMS: 1.012
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.516
   RMS: 0.544
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.530
   RMS: 0.550
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.061
   RMS: 0.600
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.623
   RMS: 0.355
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.649
   RMS: 0.402
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.303
   RMS: 0.552
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.647
   RMS: 0.609
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.477
   RMS: 0.659
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.540
   RMS: 0.710
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.519
   RMS: 0.532
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.452
   RMS: 0.622
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 3.347
   RMS: 0.572
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.493
   RMS: 0.657
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.906
   RMS: 0.592
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.265
   RMS: 0.394
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.534
   RMS: 0.606
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.763
   RMS: 0.660
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 0.503
   RMS: 0.409
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.583
   RMS: 0.800
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.560
   RMS: 0.721
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.374
   RMS: 0.617
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.682
   RMS: 0.550
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.559
   RMS: 0.598
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.713
   RMS: 0.445
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.594
   RMS: 0.668
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.672
   RMS: 0.451
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.543
   RMS: 0.584
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.959
   RMS: 0.569
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.778
   RMS: 0.563
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.843
   RMS: 0.610
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.071
   RMS: 0.621
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.421
   RMS: 0.592
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.495
   RMS: 0.713
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.927
   RMS: 0.735
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.550
   RMS: 0.688
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.551
   RMS: 0.739
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.942
   RMS: 0.802
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.439
   RMS: 0.786
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.056
   RMS: 0.561
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.332
   RMS: 0.619
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 2.866
   RMS: 0.716
   Unrecognised keyword: pdb1g9m_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 3.803
   RMS: 0.729
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1gig_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.837
   RMS: 0.648
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.898
   RMS: 0.670
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.349
   RMS: 0.734
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.807
   RMS: 0.611
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.758
   RMS: 0.405
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 4.440
   RMS: 0.531
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.402
   RMS: 0.721
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.699
   RMS: 0.530
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.550
   RMS: 0.609
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.532
   RMS: 0.611
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.120
   RMS: 0.619
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.755
   RMS: 0.680
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.618
   RMS: 0.675
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.015
   RMS: 0.813
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.896
   RMS: 0.688
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.736
   RMS: 0.710
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.693
   RMS: 0.672
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.034
   RMS: 0.704
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 3.583
   RMS: 0.550
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.853
   RMS: 0.473
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.708
   RMS: 0.546
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.910
   RMS: 0.469
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.561
   RMS: 0.885
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 0.906
   RMS: 0.615
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.788
   RMS: 0.431
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.931
   RMS: 0.570
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.635
   RMS: 0.701
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.132
   RMS: 0.627
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.549
   RMS: 0.500
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.997
   RMS: 0.583
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.042
   RMS: 0.743
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.924
   RMS: 0.682
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.789
   RMS: 0.804
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 3.872
   RMS: 0.589
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.029
   RMS: 2.029
   RMS: 13.829
   RMS: 2.029
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 0.701
   RMS: 0.599
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.991
   RMS: 0.649
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.217
   RMS: 0.601
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.302
   RMS: 0.733
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.725
   RMS: 0.822
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.271
   RMS: 0.760
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 1.104
   RMS: 0.675
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.474
   RMS: 0.683
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.726
   RMS: 1.726
   RMS: 1.517
   RMS: 1.726
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 3.538
   RMS: 0.633
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 1.356
   RMS: 0.509
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.794
   RMS: 0.672
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 3.847
   RMS: 0.656
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.386
   RMS: 0.623
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.773
   RMS: 0.598
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 1.027
   RMS: 0.652
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.835
   RMS: 0.658
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.113
   RMS: 0.612
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.266
   RMS: 0.686
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.732
   RMS: 0.630
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 1.635
   RMS: 0.537
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 1.053
   RMS: 0.535
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.249
   RMS: 0.943
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.639
   RMS: 0.665
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.698
   RMS: 0.686
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.794
   RMS: 0.658
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.910
   RMS: 0.735
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.890
   RMS: 0.622
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.618
   RMS: 0.600
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 1.014
   RMS: 0.567
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.448
   RMS: 0.685
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.616
   RMS: 0.687
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.832
   RMS: 0.514
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.736
   RMS: 0.491
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 3.913
   RMS: 0.595
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.007
   RMS: 0.650
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.503
   RMS: 0.706
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 1.824
   RMS: 0.993
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.514
   RMS: 0.531
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.528
   RMS: 0.560
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.033
   RMS: 0.607
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.347
   RMS: 0.347
   RMS: 0.582
   RMS: 0.347
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.646
   RMS: 0.372
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 1.291
   RMS: 0.547
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.618
   RMS: 0.603
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.499
   RMS: 0.653
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.495
   RMS: 0.707
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.525
   RMS: 0.537
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.394
   RMS: 0.618
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 3.372
   RMS: 0.594
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.534
   RMS: 0.677
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.858
   RMS: 0.598
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.212
   RMS: 0.388
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.539
   RMS: 0.596
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.732
   RMS: 0.639
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 0.563
   RMS: 0.387
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.618
   RMS: 0.789
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 3.576
   RMS: 0.719
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.364
   RMS: 0.606
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.680
   RMS: 0.554
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.592
   RMS: 0.601
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.685
   RMS: 0.423
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.619
   RMS: 0.658
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.646
   RMS: 0.432
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.566
   RMS: 0.584
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 3.977
   RMS: 0.567
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 3.791
   RMS: 0.555
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.821
   RMS: 0.601
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.022
   RMS: 0.605
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.424
   RMS: 0.579
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.473
   RMS: 0.701
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.920
   RMS: 0.719
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.551
   RMS: 0.705
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.570
   RMS: 0.727
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.946
   RMS: 0.803
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.473
   RMS: 0.774
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.030
   RMS: 0.558
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.373
   RMS: 0.625
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 2.887
   RMS: 0.723
   Unrecognised keyword: pdb1rzj_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.826
   RMS: 0.749
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1h0d_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.609
   RMS: 0.756
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.840
   RMS: 0.795
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.664
   RMS: 0.459
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.997
   RMS: 0.592
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 4.339
   RMS: 0.847
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 0.976
   RMS: 0.969
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.595
   RMS: 0.686
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.787
   RMS: 0.718
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.062
   RMS: 0.824
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.284
   RMS: 0.884
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.447
   RMS: 0.412
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.706
   RMS: 0.714
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 0.868
   RMS: 0.926
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.054
   RMS: 0.790
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.853
   RMS: 0.869
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.754
   RMS: 0.749
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.224
   RMS: 0.768
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 3.409
   RMS: 0.725
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.238
   RMS: 0.710
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.845
   RMS: 0.675
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 1.074
   RMS: 0.675
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.108
   RMS: 1.108
   RMS: 1.121
   RMS: 1.108
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.054
   RMS: 0.803
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 1.030
   RMS: 0.564
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.134
   RMS: 0.579
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.826
   RMS: 0.446
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.192
   RMS: 0.802
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.873
   RMS: 0.750
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.036
   RMS: 0.663
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 2.867
   RMS: 0.727
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.838
   RMS: 0.755
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.633
   RMS: 0.710
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.806
   RMS: 0.817
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.137
   RMS: 2.137
   RMS: 14.292
   RMS: 2.137
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.736
   RMS: 0.776
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.426
   RMS: 0.796
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.359
   RMS: 0.768
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.319
   RMS: 0.748
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.084
   RMS: 0.870
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.772
   RMS: 0.843
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.055
   RMS: 0.781
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.523
   RMS: 0.772
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.664
   RMS: 1.664
   RMS: 1.778
   RMS: 1.664
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 3.268
   RMS: 0.739
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.517
   RMS: 0.814
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.075
   RMS: 0.889
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.781
   RMS: 0.829
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 3.234
   RMS: 0.780
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.021
   RMS: 0.786
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.217
   RMS: 0.660
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 1.088
   RMS: 0.936
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 2.997
   RMS: 0.526
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.266
   RMS: 0.725
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.399
   RMS: 0.726
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.729
   RMS: 0.774
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.423
   RMS: 0.797
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.742
   RMS: 0.942
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.566
   RMS: 0.737
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.897
   RMS: 0.544
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.975
   RMS: 0.501
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.144
   RMS: 0.536
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.005
   RMS: 0.660
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.785
   RMS: 0.779
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.270
   RMS: 0.754
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.694
   RMS: 0.772
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.003
   RMS: 0.798
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.883
   RMS: 0.619
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.623
   RMS: 0.612
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.752
   RMS: 0.781
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.147
   RMS: 0.753
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.617
   RMS: 0.788
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 2.103
   RMS: 1.111
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.661
   RMS: 0.662
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.701
   RMS: 0.686
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.160
   RMS: 0.764
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.945
   RMS: 0.543
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 1.099
   RMS: 0.623
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.607
   RMS: 0.804
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.998
   RMS: 0.730
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.623
   RMS: 0.772
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.808
   RMS: 0.818
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.780
   RMS: 0.738
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.953
   RMS: 0.437
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 3.113
   RMS: 0.451
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.430
   RMS: 0.431
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.067
   RMS: 0.753
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.894
   RMS: 0.559
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.657
   RMS: 0.740
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.122
   RMS: 0.855
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.524
   RMS: 0.557
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.567
   RMS: 0.851
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 3.423
   RMS: 0.929
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.557
   RMS: 0.889
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.916
   RMS: 0.708
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 3.347
   RMS: 0.548
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.923
   RMS: 0.570
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.741
   RMS: 0.750
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.014
   RMS: 0.650
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.414
   RMS: 0.578
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.877
   RMS: 0.771
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.694
   RMS: 0.706
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.049
   RMS: 0.792
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 1.325
   RMS: 0.532
   Unrecognised keyword: pdb1gig_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.588
   RMS: 0.713
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.732
   RMS: 0.823
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.121
   RMS: 0.855
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 0.590
   RMS: 0.435
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 0.640
   RMS: 0.858
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.679
   RMS: 0.644
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.534
   RMS: 0.815
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.282
   RMS: 0.769
   Unrecognised keyword: pdb1gig_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.076
   RMS: 0.773
   Unrecognised keyword: pdb1gig_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 2.660
   RMS: 0.501
   Unrecognised keyword: pdb1gig_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 3.644
   RMS: 0.570
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1hil_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 1.699
   RMS: 0.424
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 1.079
   RMS: 0.672
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.757
   RMS: 0.723
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 4.603
   RMS: 0.799
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.864
   RMS: 0.519
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.446
   RMS: 0.795
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.525
   RMS: 0.370
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.991
   RMS: 0.830
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.516
   RMS: 0.828
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.843
   RMS: 0.679
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.805
   RMS: 0.456
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.439
   RMS: 0.520
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.098
   RMS: 0.848
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.795
   RMS: 0.526
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.430
   RMS: 0.472
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.921
   RMS: 0.413
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 3.760
   RMS: 0.859
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.930
   RMS: 0.723
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.802
   RMS: 0.859
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.259
   RMS: 0.790
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.232
   RMS: 0.763
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.237
   RMS: 0.826
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.032
   RMS: 0.749
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.316
   RMS: 0.757
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.856
   RMS: 0.798
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.457
   RMS: 0.850
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.955
   RMS: 0.726
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 1.385
   RMS: 0.581
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.032
   RMS: 0.908
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.902
   RMS: 0.360
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.022
   RMS: 0.853
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 4.038
   RMS: 0.835
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.027
   RMS: 2.027
   RMS: 14.303
   RMS: 2.027
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.466
   RMS: 0.441
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 1.436
   RMS: 0.399
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.128
   RMS: 0.856
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 1.007
   RMS: 0.411
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.966
   RMS: 0.513
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.913
   RMS: 0.459
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.115
   RMS: 0.462
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.595
   RMS: 0.383
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.812
   RMS: 1.812
   RMS: 1.545
   RMS: 1.812
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.526
   RMS: 0.906
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.686
   RMS: 0.842
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.094
   RMS: 0.458
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 3.934
   RMS: 0.970
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 3.513
   RMS: 0.853
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.294
   RMS: 0.882
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 1.262
   RMS: 0.934
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 1.240
   RMS: 0.909
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.177
   RMS: 0.794
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 1.468
   RMS: 0.563
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.811
   RMS: 0.433
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.909
   RMS: 0.774
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.522
   RMS: 0.827
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.804
   RMS: 0.679
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.304
   RMS: 0.396
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.764
   RMS: 0.817
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.675
   RMS: 0.785
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.706
   RMS: 0.800
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.881
   RMS: 0.552
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.907
   RMS: 0.894
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.423
   RMS: 0.848
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.870
   RMS: 0.466
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.256
   RMS: 0.471
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.188
   RMS: 0.542
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.529
   RMS: 0.452
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 4.122
   RMS: 0.867
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.290
   RMS: 0.921
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.531
   RMS: 0.381
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 1.956
   RMS: 1.146
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.660
   RMS: 0.795
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.823
   RMS: 0.792
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.124
   RMS: 0.902
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.785
   RMS: 0.693
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.291
   RMS: 0.673
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.818
   RMS: 0.882
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.783
   RMS: 0.406
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.591
   RMS: 0.403
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.315
   RMS: 0.315
   RMS: 1.646
   RMS: 0.315
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.953
   RMS: 0.825
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.854
   RMS: 0.740
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 3.356
   RMS: 0.666
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.671
   RMS: 0.714
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.728
   RMS: 0.835
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.895
   RMS: 0.770
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.665
   RMS: 0.463
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.132
   RMS: 0.472
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.832
   RMS: 0.583
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 2.008
   RMS: 1.015
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 3.648
   RMS: 0.963
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.767
   RMS: 0.892
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.996
   RMS: 0.820
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.668
   RMS: 0.510
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.841
   RMS: 0.741
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.698
   RMS: 0.391
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.017
   RMS: 0.763
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.476
   RMS: 0.514
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 4.138
   RMS: 0.852
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.899
   RMS: 0.861
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.154
   RMS: 0.839
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.048
   RMS: 0.813
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.569
   RMS: 0.425
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.640
   RMS: 0.429
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 1.127
   RMS: 0.386
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.612
   RMS: 0.829
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.758
   RMS: 0.496
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.342
   RMS: 0.682
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.736
   RMS: 0.471
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.310
   RMS: 0.798
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.470
   RMS: 0.824
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 2.811
   RMS: 0.819
   Unrecognised keyword: pdb1h0d_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.924
   RMS: 0.795
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1r0a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.731
   RMS: 0.709
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.249
   RMS: 0.779
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 5.265
   RMS: 0.898
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.134
   RMS: 0.474
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.531
   RMS: 0.868
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.358
   RMS: 0.358
   RMS: 1.410
   RMS: 0.358
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.470
   RMS: 0.856
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.998
   RMS: 0.881
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.852
   RMS: 0.709
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 1.559
   RMS: 0.384
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 1.553
   RMS: 0.471
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.607
   RMS: 0.887
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 1.515
   RMS: 0.441
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.430
   RMS: 0.426
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.301
   RMS: 0.301
   RMS: 1.221
   RMS: 0.301
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 4.446
   RMS: 0.927
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.304
   RMS: 0.797
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 1.605
   RMS: 0.920
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.863
   RMS: 0.871
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.579
   RMS: 0.638
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.885
   RMS: 0.884
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.554
   RMS: 0.823
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.951
   RMS: 0.750
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.574
   RMS: 0.837
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 2.049
   RMS: 0.917
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.396
   RMS: 0.798
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 2.062
   RMS: 0.618
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 3.864
   RMS: 0.956
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 1.420
   RMS: 0.368
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.915
   RMS: 0.900
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 4.677
   RMS: 0.877
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.872
   RMS: 1.872
   RMS: 13.275
   RMS: 1.872
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.454
   RMS: 0.455
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.274
   RMS: 0.274
   RMS: 0.781
   RMS: 0.274
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.821
   RMS: 0.883
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 1.400
   RMS: 0.376
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 1.172
   RMS: 0.335
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 1.370
   RMS: 0.312
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 2.018
   RMS: 0.496
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 1.489
   RMS: 0.295
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.765
   RMS: 1.765
   RMS: 1.440
   RMS: 1.765
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 4.341
   RMS: 0.998
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 2.239
   RMS: 0.901
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.381
   RMS: 0.414
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 4.619
   RMS: 1.047
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 4.166
   RMS: 0.868
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 1.896
   RMS: 0.946
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.818
   RMS: 0.938
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.414
   RMS: 0.970
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 3.852
   RMS: 0.856
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 2.059
   RMS: 0.517
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 1.847
   RMS: 0.431
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 2.433
   RMS: 0.820
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.477
   RMS: 0.857
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 1.431
   RMS: 0.500
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 1.596
   RMS: 0.298
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.532
   RMS: 0.903
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 1.558
   RMS: 0.871
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.400
   RMS: 0.854
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 1.300
   RMS: 0.544
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.236
   RMS: 0.952
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.867
   RMS: 0.884
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 1.492
   RMS: 0.355
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.703
   RMS: 0.435
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 1.864
   RMS: 0.487
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.730
   RMS: 0.498
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 4.743
   RMS: 0.903
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 1.773
   RMS: 1.002
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.248
   RMS: 0.248
   RMS: 1.399
   RMS: 0.248
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.191
   RMS: 1.191
   RMS: 2.050
   RMS: 1.191
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 1.440
   RMS: 0.931
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.576
   RMS: 0.853
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.870
   RMS: 0.973
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.430
   RMS: 0.719
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.313
   RMS: 0.723
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 1.929
   RMS: 0.957
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 1.233
   RMS: 0.314
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 1.411
   RMS: 0.329
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.293
   RMS: 0.293
   RMS: 0.611
   RMS: 0.293
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.654
   RMS: 0.887
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.116
   RMS: 0.704
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 4.118
   RMS: 0.764
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.667
   RMS: 0.756
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.509
   RMS: 0.898
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.393
   RMS: 0.817
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.357
   RMS: 0.540
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.688
   RMS: 0.468
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 1.810
   RMS: 0.656
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 2.523
   RMS: 1.020
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.045
   RMS: 1.045
   RMS: 4.339
   RMS: 1.045
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 2.221
   RMS: 0.971
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.695
   RMS: 0.893
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 4.376
   RMS: 0.537
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.568
   RMS: 0.811
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.334
   RMS: 0.334
   RMS: 1.350
   RMS: 0.334
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.385
   RMS: 0.809
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 1.507
   RMS: 0.481
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 4.800
   RMS: 0.928
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 4.597
   RMS: 0.935
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.758
   RMS: 0.921
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.641
   RMS: 0.798
   Unrecognised keyword: pdb1hil_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 1.395
   RMS: 0.463
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 1.338
   RMS: 0.312
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 1.872
   RMS: 0.341
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.582
   RMS: 0.883
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.366
   RMS: 0.366
   RMS: 1.328
   RMS: 0.366
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.667
   RMS: 0.725
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 1.637
   RMS: 0.422
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.730
   RMS: 0.837
   Unrecognised keyword: pdb1hil_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 2.280
   RMS: 0.924
   Unrecognised keyword: pdb1hil_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.617
   RMS: 0.839
   Unrecognised keyword: pdb1hil_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 4.647
   RMS: 0.794
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1n0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.038
   RMS: 0.631
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 4.248
   RMS: 0.770
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.932
   RMS: 0.864
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.992
   RMS: 0.701
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.958
   RMS: 0.617
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.028
   RMS: 0.785
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.115
   RMS: 0.795
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.632
   RMS: 0.429
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.663
   RMS: 0.650
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.261
   RMS: 0.836
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.041
   RMS: 0.750
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.834
   RMS: 0.752
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.985
   RMS: 0.689
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.360
   RMS: 0.697
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.315
   RMS: 0.694
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.387
   RMS: 0.709
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.970
   RMS: 0.648
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.958
   RMS: 0.646
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.027
   RMS: 1.027
   RMS: 1.011
   RMS: 1.027
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.977
   RMS: 0.711
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 1.066
   RMS: 0.606
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.986
   RMS: 0.595
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.908
   RMS: 0.478
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.958
   RMS: 0.725
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.657
   RMS: 0.721
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 0.850
   RMS: 0.529
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 2.954
   RMS: 0.696
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.860
   RMS: 0.712
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.543
   RMS: 0.676
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.734
   RMS: 0.724
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.048
   RMS: 2.048
   RMS: 13.900
   RMS: 2.048
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.948
   RMS: 0.674
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.298
   RMS: 0.682
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.566
   RMS: 0.745
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.483
   RMS: 0.704
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.076
   RMS: 0.801
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.644
   RMS: 0.716
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.149
   RMS: 0.687
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.625
   RMS: 0.654
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.713
   RMS: 1.713
   RMS: 1.763
   RMS: 1.713
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.276
   RMS: 0.679
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.385
   RMS: 0.749
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.872
   RMS: 0.766
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 3.778
   RMS: 0.767
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.157
   RMS: 0.749
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.906
   RMS: 0.761
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.210
   RMS: 0.645
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.924
   RMS: 0.860
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 2.993
   RMS: 0.535
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.221
   RMS: 0.678
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.544
   RMS: 0.605
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.689
   RMS: 0.736
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.254
   RMS: 0.743
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.666
   RMS: 0.861
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.899
   RMS: 0.678
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 1.080
   RMS: 0.556
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.197
   RMS: 0.506
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 1.432
   RMS: 0.528
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.018
   RMS: 0.540
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.756
   RMS: 0.712
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.196
   RMS: 0.733
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.671
   RMS: 0.709
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.660
   RMS: 0.612
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.564
   RMS: 0.523
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.909
   RMS: 0.516
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.600
   RMS: 0.730
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.086
   RMS: 0.687
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.819
   RMS: 0.705
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.116
   RMS: 1.116
   RMS: 2.176
   RMS: 1.116
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.679
   RMS: 0.696
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.744
   RMS: 0.705
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.292
   RMS: 0.720
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 1.027
   RMS: 0.590
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.741
   RMS: 0.624
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.301
   RMS: 0.792
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.057
   RMS: 0.617
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.742
   RMS: 0.686
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.807
   RMS: 0.717
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.709
   RMS: 0.737
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.918
   RMS: 0.460
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 3.106
   RMS: 0.469
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.536
   RMS: 0.389
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.417
   RMS: 0.766
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.891
   RMS: 0.593
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.824
   RMS: 0.665
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.109
   RMS: 0.743
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 0.550
   RMS: 0.559
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.188
   RMS: 0.845
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 3.364
   RMS: 0.884
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.452
   RMS: 0.797
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.902
   RMS: 0.711
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 3.260
   RMS: 0.512
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.009
   RMS: 0.611
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.835
   RMS: 0.645
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.853
   RMS: 0.633
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.689
   RMS: 0.542
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.795
   RMS: 0.727
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.663
   RMS: 0.711
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.077
   RMS: 0.750
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.466
   RMS: 0.611
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.730
   RMS: 0.625
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.858
   RMS: 0.731
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.117
   RMS: 0.747
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.759
   RMS: 0.461
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.661
   RMS: 0.759
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.077
   RMS: 0.650
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.580
   RMS: 0.735
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.211
   RMS: 0.736
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.913
   RMS: 0.762
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 2.791
   RMS: 0.578
   Unrecognised keyword: pdb1r0a_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 3.584
   RMS: 0.607
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1i7z_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 4.797
   RMS: 0.599
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.519
   RMS: 0.833
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.858
   RMS: 0.436
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.444
   RMS: 0.693
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.841
   RMS: 0.606
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.453
   RMS: 0.655
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.164
   RMS: 0.658
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.586
   RMS: 0.711
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.795
   RMS: 0.893
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.072
   RMS: 0.678
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.669
   RMS: 0.754
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.427
   RMS: 0.758
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.497
   RMS: 0.734
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 4.031
   RMS: 0.541
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.721
   RMS: 0.397
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.907
   RMS: 0.530
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 1.236
   RMS: 0.469
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.144
   RMS: 0.973
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 1.205
   RMS: 0.661
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.916
   RMS: 0.363
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 1.312
   RMS: 0.543
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.866
   RMS: 0.684
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 1.418
   RMS: 0.639
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.620
   RMS: 0.484
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.458
   RMS: 0.671
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.340
   RMS: 0.815
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.874
   RMS: 0.716
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.169
   RMS: 0.806
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 4.207
   RMS: 0.617
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.065
   RMS: 2.065
   RMS: 13.908
   RMS: 2.065
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.561
   RMS: 0.641
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.159
   RMS: 0.730
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 1.192
   RMS: 0.599
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.818
   RMS: 0.738
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.552
   RMS: 0.859
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.769
   RMS: 0.799
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.236
   RMS: 0.718
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.678
   RMS: 0.754
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.702
   RMS: 1.702
   RMS: 1.236
   RMS: 1.702
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 3.850
   RMS: 0.644
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 1.662
   RMS: 0.569
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.704
   RMS: 0.753
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 4.104
   RMS: 0.672
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 3.782
   RMS: 0.568
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 1.342
   RMS: 0.640
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.322
   RMS: 0.665
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.985
   RMS: 0.709
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.435
   RMS: 0.598
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 1.578
   RMS: 0.695
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.980
   RMS: 0.715
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 1.985
   RMS: 0.555
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 1.270
   RMS: 0.622
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 0.701
   RMS: 0.977
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.631
   RMS: 0.703
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.836
   RMS: 0.680
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.677
   RMS: 0.639
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.642
   RMS: 0.740
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.529
   RMS: 0.649
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.906
   RMS: 0.612
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 1.408
   RMS: 0.533
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.794
   RMS: 0.723
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.114
   RMS: 0.775
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.167
   RMS: 0.588
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.832
   RMS: 0.553
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 4.348
   RMS: 0.666
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.344
   RMS: 0.659
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.577
   RMS: 0.743
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 1.857
   RMS: 1.002
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.628
   RMS: 0.457
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.829
   RMS: 0.531
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 1.252
   RMS: 0.639
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.279
   RMS: 0.279
   RMS: 0.659
   RMS: 0.279
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.033
   RMS: 0.392
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 1.641
   RMS: 0.628
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.405
   RMS: 0.672
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.587
   RMS: 0.685
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.366
   RMS: 0.750
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.936
   RMS: 0.501
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.555
   RMS: 0.596
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 3.649
   RMS: 0.633
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.806
   RMS: 0.705
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.987
   RMS: 0.624
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.328
   RMS: 0.328
   RMS: 0.782
   RMS: 0.328
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.668
   RMS: 0.681
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.090
   RMS: 0.710
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 0.953
   RMS: 0.395
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 2.008
   RMS: 0.744
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 3.856
   RMS: 0.759
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 1.753
   RMS: 0.644
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.920
   RMS: 0.521
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 3.945
   RMS: 0.638
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 0.809
   RMS: 0.323
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.620
   RMS: 0.750
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 0.710
   RMS: 0.310
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.672
   RMS: 0.593
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 4.322
   RMS: 0.587
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 4.102
   RMS: 0.523
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 1.213
   RMS: 0.609
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 1.003
   RMS: 0.524
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.572
   RMS: 0.643
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.589
   RMS: 0.783
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.044
   RMS: 0.776
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.738
   RMS: 0.682
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.641
   RMS: 0.813
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.692
   RMS: 0.809
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.817
   RMS: 0.841
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.146
   RMS: 0.538
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.697
   RMS: 0.605
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.148
   RMS: 0.716
   Unrecognised keyword: pdb1n0x_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 4.189
   RMS: 0.805
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1i8k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 4.571
   RMS: 0.866
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 4.416
   RMS: 0.547
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 4.559
   RMS: 0.763
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 4.263
   RMS: 0.682
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.721
   RMS: 0.422
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 4.045
   RMS: 0.807
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 4.562
   RMS: 0.815
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 4.926
   RMS: 0.969
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 4.066
   RMS: 0.749
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 4.302
   RMS: 0.800
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 4.702
   RMS: 0.838
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 5.165
   RMS: 0.825
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.931
   RMS: 0.678
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 4.648
   RMS: 0.609
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 4.127
   RMS: 0.604
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 3.829
   RMS: 0.480
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 4.064
   RMS: 1.010
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.879
   RMS: 0.573
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 4.222
   RMS: 0.606
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.786
   RMS: 0.784
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 4.207
   RMS: 0.864
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 3.677
   RMS: 0.610
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 4.490
   RMS: 0.547
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 3.707
   RMS: 0.656
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 2.484
   RMS: 0.889
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 4.870
   RMS: 0.860
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 3.960
   RMS: 0.866
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.936
   RMS: 0.544
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.055
   RMS: 2.055
   RMS: 13.370
   RMS: 2.055
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 4.517
   RMS: 0.684
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 4.589
   RMS: 0.783
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 4.263
   RMS: 0.574
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 5.358
   RMS: 0.923
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 5.001
   RMS: 0.999
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 4.483
   RMS: 0.907
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.883
   RMS: 0.758
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 4.421
   RMS: 0.807
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.826
   RMS: 1.826
   RMS: 4.723
   RMS: 1.826
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 1.951
   RMS: 0.642
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 3.553
   RMS: 0.319
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 4.823
   RMS: 0.810
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 1.367
   RMS: 0.551
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.591
   RMS: 0.574
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 3.802
   RMS: 0.570
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 3.834
   RMS: 0.930
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 4.238
   RMS: 0.492
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 2.044
   RMS: 0.775
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 3.648
   RMS: 0.760
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 4.393
   RMS: 0.735
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.348
   RMS: 0.524
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 4.177
   RMS: 0.531
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 4.394
   RMS: 1.096
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 4.494
   RMS: 0.825
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 4.253
   RMS: 0.811
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 4.443
   RMS: 0.822
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 4.858
   RMS: 0.844
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 4.995
   RMS: 0.732
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 4.507
   RMS: 0.601
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 3.764
   RMS: 0.574
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 4.324
   RMS: 0.814
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 4.048
   RMS: 0.816
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.927
   RMS: 0.711
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 4.223
   RMS: 0.643
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 1.714
   RMS: 0.602
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.800
   RMS: 0.662
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 4.639
   RMS: 0.871
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 4.145
   RMS: 0.944
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 4.338
   RMS: 0.678
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 4.169
   RMS: 0.530
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 3.926
   RMS: 0.545
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 4.369
   RMS: 0.564
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 4.377
   RMS: 0.640
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.737
   RMS: 0.679
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 4.740
   RMS: 0.736
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 4.632
   RMS: 0.778
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 5.444
   RMS: 0.826
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 4.070
   RMS: 0.524
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 4.567
   RMS: 0.872
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 2.268
   RMS: 0.680
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 4.239
   RMS: 0.829
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 4.518
   RMS: 0.544
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 4.363
   RMS: 0.626
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 4.614
   RMS: 0.674
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 4.013
   RMS: 0.765
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 4.189
   RMS: 0.558
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.410
   RMS: 0.730
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.517
   RMS: 0.659
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.327
   RMS: 0.327
   RMS: 3.525
   RMS: 0.327
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 4.075
   RMS: 0.562
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 2.429
   RMS: 0.715
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 4.211
   RMS: 0.574
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 4.787
   RMS: 0.817
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 4.297
   RMS: 0.579
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 4.499
   RMS: 0.770
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.797
   RMS: 0.580
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.066
   RMS: 0.579
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 3.879
   RMS: 0.588
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 4.359
   RMS: 0.808
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 4.477
   RMS: 0.735
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 4.496
   RMS: 0.846
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 4.062
   RMS: 0.832
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 4.259
   RMS: 0.865
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 4.645
   RMS: 0.852
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 4.612
   RMS: 0.939
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 4.205
   RMS: 0.906
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 4.036
   RMS: 0.523
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.897
   RMS: 0.583
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 2.914
   RMS: 0.922
   Unrecognised keyword: pdb1i7z_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.239
   RMS: 0.911
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1i8m_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.735
   RMS: 0.878
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.407
   RMS: 0.497
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.475
   RMS: 0.838
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.154
   RMS: 0.838
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.948
   RMS: 0.839
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.693
   RMS: 0.545
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.963
   RMS: 0.536
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.787
   RMS: 0.901
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.561
   RMS: 0.441
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.573
   RMS: 0.480
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.835
   RMS: 0.485
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 3.806
   RMS: 0.942
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.575
   RMS: 0.794
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.634
   RMS: 0.951
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.934
   RMS: 0.874
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.699
   RMS: 0.498
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.927
   RMS: 0.885
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.654
   RMS: 0.889
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.988
   RMS: 0.821
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 0.571
   RMS: 0.994
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.171
   RMS: 0.923
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.566
   RMS: 0.768
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 1.149
   RMS: 0.680
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 3.192
   RMS: 1.031
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 0.972
   RMS: 0.502
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.941
   RMS: 0.951
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 3.998
   RMS: 0.871
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.999
   RMS: 1.999
   RMS: 13.653
   RMS: 1.999
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.520
   RMS: 0.517
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.851
   RMS: 0.426
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.035
   RMS: 0.874
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.178
   RMS: 0.542
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.690
   RMS: 0.523
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.491
   RMS: 0.447
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.060
   RMS: 0.538
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.536
   RMS: 0.454
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.822
   RMS: 1.822
   RMS: 1.164
   RMS: 1.822
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 3.695
   RMS: 1.015
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.372
   RMS: 0.885
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.818
   RMS: 0.394
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 3.934
   RMS: 1.058
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 3.530
   RMS: 0.928
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 0.973
   RMS: 0.932
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 0.974
   RMS: 0.969
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.725
   RMS: 0.905
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 3.243
   RMS: 0.959
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.258
   RMS: 0.707
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.934
   RMS: 0.515
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.670
   RMS: 0.777
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.931
   RMS: 0.806
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.405
   RMS: 0.602
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.625
   RMS: 0.429
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 0.613
   RMS: 1.007
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 0.620
   RMS: 0.973
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.718
   RMS: 0.965
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.819
   RMS: 0.659
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 0.641
   RMS: 0.930
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.040
   RMS: 0.874
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.584
   RMS: 0.470
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.782
   RMS: 0.487
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.933
   RMS: 0.579
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.708
   RMS: 0.584
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 4.120
   RMS: 0.878
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 0.991
   RMS: 1.037
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.537
   RMS: 0.456
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.180
   RMS: 1.180
   RMS: 1.641
   RMS: 1.180
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.451
   RMS: 0.947
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.542
   RMS: 0.885
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 0.977
   RMS: 0.975
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.393
   RMS: 0.783
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.729
   RMS: 0.776
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 1.304
   RMS: 0.946
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.391
   RMS: 0.448
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.570
   RMS: 0.425
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 1.342
   RMS: 0.446
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.624
   RMS: 0.891
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.143
   RMS: 0.835
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 3.518
   RMS: 0.872
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.655
   RMS: 0.866
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.793
   RMS: 0.910
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.392
   RMS: 0.851
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.532
   RMS: 0.600
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.733
   RMS: 0.467
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.799
   RMS: 0.738
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 1.766
   RMS: 1.052
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 3.697
   RMS: 0.999
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.424
   RMS: 0.921
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.680
   RMS: 0.896
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 3.787
   RMS: 0.673
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.557
   RMS: 0.852
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.679
   RMS: 0.415
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.446
   RMS: 0.841
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.625
   RMS: 0.587
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 4.115
   RMS: 0.929
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 3.908
   RMS: 0.946
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.864
   RMS: 0.922
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.808
   RMS: 0.865
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.418
   RMS: 0.497
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.366
   RMS: 0.408
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.861
   RMS: 0.397
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.028
   RMS: 1.028
   RMS: 0.540
   RMS: 1.028
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.579
   RMS: 0.411
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 0.834
   RMS: 0.914
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.608
   RMS: 0.532
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.903
   RMS: 0.809
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.551
   RMS: 0.921
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 3.040
   RMS: 0.974
   Unrecognised keyword: pdb1i8k_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 3.976
   RMS: 0.850
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1i9j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.550
   RMS: 0.749
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.813
   RMS: 0.500
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.311
   RMS: 0.631
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.639
   RMS: 0.731
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.837
   RMS: 0.790
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 0.659
   RMS: 0.952
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.901
   RMS: 0.550
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.758
   RMS: 0.795
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.595
   RMS: 0.815
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.079
   RMS: 0.833
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 3.557
   RMS: 0.607
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.889
   RMS: 0.521
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.622
   RMS: 0.397
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.073
   RMS: 0.392
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 0.944
   RMS: 1.039
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 1.079
   RMS: 0.536
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.913
   RMS: 0.429
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.159
   RMS: 0.658
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.742
   RMS: 0.792
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 1.276
   RMS: 0.442
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.877
   RMS: 0.436
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 1.190
   RMS: 0.695
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 2.886
   RMS: 0.903
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.914
   RMS: 0.815
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.894
   RMS: 0.845
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.858
   RMS: 0.422
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.126
   RMS: 2.126
   RMS: 14.087
   RMS: 2.126
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.525
   RMS: 0.700
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.135
   RMS: 0.792
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.357
   RMS: 0.357
   RMS: 1.072
   RMS: 0.357
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.199
   RMS: 0.800
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.989
   RMS: 0.950
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.766
   RMS: 0.869
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.019
   RMS: 0.797
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.517
   RMS: 0.806
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.644
   RMS: 1.644
   RMS: 1.546
   RMS: 1.644
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 3.370
   RMS: 0.416
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.507
   RMS: 0.498
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.104
   RMS: 0.814
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 3.779
   RMS: 0.485
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 3.304
   RMS: 0.397
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.038
   RMS: 0.450
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.063
   RMS: 0.757
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 1.052
   RMS: 0.649
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.002
   RMS: 0.704
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.267
   RMS: 0.800
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.829
   RMS: 0.767
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.680
   RMS: 0.392
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.324
   RMS: 0.618
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 0.667
   RMS: 1.058
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.416
   RMS: 0.769
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.590
   RMS: 0.748
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.690
   RMS: 0.756
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.814
   RMS: 0.791
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.984
   RMS: 0.627
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.694
   RMS: 0.405
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 1.176
   RMS: 0.379
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.692
   RMS: 0.798
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.061
   RMS: 0.818
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 1.049
   RMS: 0.639
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.500
   RMS: 0.613
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 3.917
   RMS: 0.471
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 1.037
   RMS: 0.512
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.532
   RMS: 0.834
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 1.756
   RMS: 1.014
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.544
   RMS: 0.576
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.656
   RMS: 0.368
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.954
   RMS: 0.433
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.698
   RMS: 0.437
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 1.064
   RMS: 0.543
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.563
   RMS: 0.627
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.814
   RMS: 0.746
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.582
   RMS: 0.750
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.519
   RMS: 0.816
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.281
   RMS: 0.281
   RMS: 0.762
   RMS: 0.281
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.716
   RMS: 0.751
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 3.223
   RMS: 0.675
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.577
   RMS: 0.762
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.578
   RMS: 0.484
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.690
   RMS: 0.448
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.626
   RMS: 0.762
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.914
   RMS: 0.823
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.738
   RMS: 0.479
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.814
   RMS: 0.674
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 3.491
   RMS: 0.609
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.531
   RMS: 0.576
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.847
   RMS: 0.309
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.512
   RMS: 0.677
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 0.734
   RMS: 0.521
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.701
   RMS: 0.804
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.917
   RMS: 0.450
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.438
   RMS: 0.618
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 3.959
   RMS: 0.414
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 3.731
   RMS: 0.386
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.882
   RMS: 0.475
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.014
   RMS: 0.655
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.476
   RMS: 0.720
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.545
   RMS: 0.833
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.064
   RMS: 0.824
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.519
   RMS: 0.766
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.724
   RMS: 0.883
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.630
   RMS: 0.898
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.581
   RMS: 0.863
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.155
   RMS: 0.363
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.331
   RMS: 0.450
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 2.671
   RMS: 0.833
   Unrecognised keyword: pdb1i8m_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.745
   RMS: 0.862
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1i9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.582
   RMS: 0.752
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.252
   RMS: 0.782
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.860
   RMS: 0.612
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 0.567
   RMS: 0.395
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.721
   RMS: 0.525
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.860
   RMS: 0.805
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.469
   RMS: 0.459
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.353
   RMS: 0.426
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.781
   RMS: 0.368
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.789
   RMS: 0.842
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.621
   RMS: 0.685
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.595
   RMS: 0.779
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.993
   RMS: 0.733
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.881
   RMS: 0.692
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.968
   RMS: 0.721
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.737
   RMS: 0.673
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.035
   RMS: 0.691
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.593
   RMS: 0.736
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.220
   RMS: 0.773
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 0.606
   RMS: 0.668
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 1.219
   RMS: 0.490
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 3.069
   RMS: 0.837
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.909
   RMS: 0.375
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.911
   RMS: 0.801
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.972
   RMS: 0.728
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.948
   RMS: 1.948
   RMS: 13.933
   RMS: 1.948
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.337
   RMS: 0.402
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.255
   RMS: 0.255
   RMS: 1.138
   RMS: 0.255
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.976
   RMS: 0.761
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 1.066
   RMS: 0.385
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.743
   RMS: 0.511
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.633
   RMS: 0.438
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.958
   RMS: 0.388
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.357
   RMS: 0.357
   RMS: 0.479
   RMS: 0.357
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.737
   RMS: 1.737
   RMS: 1.286
   RMS: 1.737
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.611
   RMS: 0.844
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.428
   RMS: 0.779
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.835
   RMS: 0.389
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 3.874
   RMS: 0.880
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 3.529
   RMS: 0.760
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.065
   RMS: 0.829
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.044
   RMS: 0.866
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.902
   RMS: 0.847
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 3.201
   RMS: 0.744
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.315
   RMS: 0.571
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.816
   RMS: 0.350
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.706
   RMS: 0.712
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.159
   RMS: 0.752
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.472
   RMS: 0.669
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 0.323
   RMS: 0.349
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.537
   RMS: 0.788
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.417
   RMS: 0.760
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.549
   RMS: 0.747
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.746
   RMS: 0.508
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.789
   RMS: 0.805
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.147
   RMS: 0.773
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.570
   RMS: 0.431
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.923
   RMS: 0.412
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.958
   RMS: 0.400
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.483
   RMS: 0.360
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 4.125
   RMS: 0.786
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.100
   RMS: 0.848
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 0.396
   RMS: 0.346
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 1.721
   RMS: 1.074
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.429
   RMS: 0.786
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.552
   RMS: 0.724
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.956
   RMS: 0.812
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.399
   RMS: 0.620
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 1.006
   RMS: 0.630
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.499
   RMS: 0.827
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 0.455
   RMS: 0.314
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.476
   RMS: 0.392
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 1.526
   RMS: 0.335
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.672
   RMS: 0.750
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.465
   RMS: 0.663
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 3.454
   RMS: 0.618
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.545
   RMS: 0.658
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.681
   RMS: 0.802
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.541
   RMS: 0.692
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.472
   RMS: 0.421
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.790
   RMS: 0.424
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.703
   RMS: 0.549
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 1.835
   RMS: 0.979
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 3.667
   RMS: 0.937
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.503
   RMS: 0.839
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.671
   RMS: 0.752
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 3.754
   RMS: 0.506
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.530
   RMS: 0.699
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 0.620
   RMS: 0.365
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.594
   RMS: 0.714
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.453
   RMS: 0.452
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 4.089
   RMS: 0.784
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.861
   RMS: 0.781
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.927
   RMS: 0.777
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.774
   RMS: 0.709
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.360
   RMS: 0.410
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 0.385
   RMS: 0.346
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.840
   RMS: 0.411
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.429
   RMS: 0.782
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.617
   RMS: 0.463
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.549
   RMS: 0.719
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.535
   RMS: 0.427
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.004
   RMS: 0.724
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.496
   RMS: 0.771
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 2.908
   RMS: 0.751
   Unrecognised keyword: pdb1i9j_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 3.932
   RMS: 0.786
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1iai_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.946
   RMS: 0.737
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.900
   RMS: 0.807
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.892
   RMS: 0.817
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.192
   RMS: 0.956
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.719
   RMS: 0.578
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.597
   RMS: 0.782
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.813
   RMS: 0.821
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.229
   RMS: 0.855
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 3.579
   RMS: 0.757
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.694
   RMS: 0.514
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.476
   RMS: 0.491
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.708
   RMS: 0.498
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 0.464
   RMS: 0.976
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.723
   RMS: 0.522
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.637
   RMS: 0.551
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.705
   RMS: 0.763
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.551
   RMS: 0.881
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.935
   RMS: 0.429
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.706
   RMS: 0.478
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.984
   RMS: 0.792
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 2.944
   RMS: 0.948
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.250
   RMS: 0.796
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 0.868
   RMS: 0.930
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 3.694
   RMS: 0.476
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.056
   RMS: 2.056
   RMS: 13.600
   RMS: 2.056
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.689
   RMS: 0.675
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.041
   RMS: 0.777
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.890
   RMS: 0.416
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.518
   RMS: 0.842
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.078
   RMS: 0.951
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 0.695
   RMS: 0.844
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.860
   RMS: 0.792
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.700
   RMS: 0.793
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.621
   RMS: 1.621
   RMS: 1.305
   RMS: 1.621
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 3.472
   RMS: 0.604
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 1.059
   RMS: 0.573
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.076
   RMS: 0.784
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 3.620
   RMS: 0.581
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.272
   RMS: 0.464
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.731
   RMS: 0.523
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.720
   RMS: 0.874
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.766
   RMS: 0.650
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.011
   RMS: 0.828
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.093
   RMS: 0.796
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.049
   RMS: 0.798
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 1.361
   RMS: 0.404
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.893
   RMS: 0.583
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.044
   RMS: 1.044
   RMS: 0.500
   RMS: 1.044
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.741
   RMS: 0.786
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.555
   RMS: 0.866
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.618
   RMS: 0.888
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.902
   RMS: 0.882
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 1.141
   RMS: 0.692
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.866
   RMS: 0.457
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.767
   RMS: 0.401
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.695
   RMS: 0.815
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.686
   RMS: 0.829
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.803
   RMS: 0.698
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.653
   RMS: 0.693
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 3.889
   RMS: 0.519
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.794
   RMS: 0.604
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.773
   RMS: 0.831
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 1.452
   RMS: 0.987
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.542
   RMS: 0.732
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.489
   RMS: 0.493
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 0.715
   RMS: 0.550
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.369
   RMS: 0.562
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.870
   RMS: 0.653
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.121
   RMS: 0.691
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.744
   RMS: 0.730
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.804
   RMS: 0.777
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.693
   RMS: 0.824
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.453
   RMS: 0.417
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.519
   RMS: 0.833
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.346
   RMS: 0.811
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.681
   RMS: 0.873
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.797
   RMS: 0.610
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.398
   RMS: 0.620
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.829
   RMS: 0.769
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.403
   RMS: 0.805
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.756
   RMS: 0.666
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.593
   RMS: 0.779
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.453
   RMS: 0.682
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 1.138
   RMS: 0.679
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.501
   RMS: 0.463
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 3.621
   RMS: 0.792
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.434
   RMS: 0.637
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.987
   RMS: 0.829
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.462
   RMS: 0.577
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.790
   RMS: 0.708
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 3.826
   RMS: 0.474
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 3.609
   RMS: 0.475
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.604
   RMS: 0.556
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.691
   RMS: 0.771
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.650
   RMS: 0.734
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.624
   RMS: 0.826
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.697
   RMS: 0.813
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.548
   RMS: 0.895
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.922
   RMS: 0.850
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 1.004
   RMS: 0.930
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.605
   RMS: 0.807
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.726
   RMS: 0.391
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 1.439
   RMS: 0.559
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 2.866
   RMS: 0.946
   Unrecognised keyword: pdb1i9r_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 3.726
   RMS: 0.945
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ibg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.032
   RMS: 0.816
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.326
   RMS: 0.756
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 1.844
   RMS: 0.941
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.724
   RMS: 0.768
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.941
   RMS: 0.738
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.443
   RMS: 0.800
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.852
   RMS: 0.800
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.261
   RMS: 0.696
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.299
   RMS: 0.693
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.813
   RMS: 0.657
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.304
   RMS: 0.545
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.724
   RMS: 0.965
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.340
   RMS: 0.666
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.708
   RMS: 0.701
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.393
   RMS: 0.760
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 0.748
   RMS: 0.914
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.376
   RMS: 0.724
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.218
   RMS: 0.625
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.495
   RMS: 0.696
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 2.838
   RMS: 0.987
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.774
   RMS: 0.872
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.763
   RMS: 0.897
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.261
   RMS: 0.619
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.079
   RMS: 2.079
   RMS: 13.296
   RMS: 2.079
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 1.241
   RMS: 0.669
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.347
   RMS: 0.783
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 1.134
   RMS: 0.643
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 2.196
   RMS: 0.895
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 1.711
   RMS: 0.952
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 1.191
   RMS: 0.874
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.631
   RMS: 0.756
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.170
   RMS: 0.779
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.791
   RMS: 1.791
   RMS: 1.528
   RMS: 1.791
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.201
   RMS: 0.718
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.396
   RMS: 0.431
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.657
   RMS: 0.803
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.222
   RMS: 0.662
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 2.893
   RMS: 0.660
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.576
   RMS: 0.686
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 0.528
   RMS: 0.950
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.692
   RMS: 0.516
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 2.844
   RMS: 0.859
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.452
   RMS: 0.760
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.299
   RMS: 0.725
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.752
   RMS: 0.613
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.700
   RMS: 0.598
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 1.080
   RMS: 1.020
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.290
   RMS: 0.805
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.920
   RMS: 0.878
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.130
   RMS: 0.902
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.582
   RMS: 0.917
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.777
   RMS: 0.686
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 1.320
   RMS: 0.680
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.365
   RMS: 0.652
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.981
   RMS: 0.790
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.712
   RMS: 0.774
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.676
   RMS: 0.697
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.005
   RMS: 0.674
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 3.481
   RMS: 0.669
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.538
   RMS: 0.718
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.384
   RMS: 0.860
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.387
   RMS: 0.948
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.025
   RMS: 0.767
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.737
   RMS: 0.629
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.743
   RMS: 0.647
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.958
   RMS: 0.624
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.141
   RMS: 0.707
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.592
   RMS: 0.747
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.377
   RMS: 0.734
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 1.407
   RMS: 0.738
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 2.291
   RMS: 0.829
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.674
   RMS: 0.653
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.162
   RMS: 0.876
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 3.151
   RMS: 0.777
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.980
   RMS: 0.871
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 1.446
   RMS: 0.612
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.035
   RMS: 0.658
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 1.326
   RMS: 0.718
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.643
   RMS: 0.749
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 1.023
   RMS: 0.612
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.926
   RMS: 0.723
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.134
   RMS: 0.711
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.431
   RMS: 0.419
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.620
   RMS: 0.672
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 3.396
   RMS: 0.692
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.791
   RMS: 0.606
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.588
   RMS: 0.794
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.817
   RMS: 0.594
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.273
   RMS: 0.758
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.372
   RMS: 0.674
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 3.209
   RMS: 0.664
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.580
   RMS: 0.677
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.099
   RMS: 0.820
   Unrecognised keyword: pdb1iai_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.160
   RMS: 0.735
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.145
   RMS: 0.830
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.657
   RMS: 0.795
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.922
   RMS: 0.927
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.335
   RMS: 0.828
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.418
   RMS: 0.970
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.902
   RMS: 0.911
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.573
   RMS: 0.585
   Unrecognised keyword: pdb1iai_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 1.464
   RMS: 0.652
   Unrecognised keyword: pdb1iai_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 2.867
   RMS: 0.940
   Unrecognised keyword: pdb1iai_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 3.273
   RMS: 0.884
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1igc_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.852
   RMS: 0.629
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.110
   RMS: 0.839
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.895
   RMS: 0.755
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.821
   RMS: 0.725
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.939
   RMS: 0.661
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.464
   RMS: 0.673
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.130
   RMS: 0.772
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.262
   RMS: 0.717
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.705
   RMS: 0.702
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.823
   RMS: 0.680
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 0.845
   RMS: 0.987
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.848
   RMS: 0.734
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.959
   RMS: 0.623
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.851
   RMS: 0.562
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.737
   RMS: 0.439
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.932
   RMS: 0.785
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.880
   RMS: 0.715
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.737
   RMS: 0.555
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 2.640
   RMS: 0.711
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.020
   RMS: 0.693
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.393
   RMS: 0.627
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 3.520
   RMS: 0.777
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.072
   RMS: 2.072
   RMS: 14.048
   RMS: 2.072
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.827
   RMS: 0.687
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.311
   RMS: 0.687
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 1.305
   RMS: 0.745
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.597
   RMS: 0.698
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.247
   RMS: 0.789
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.722
   RMS: 0.750
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.909
   RMS: 0.642
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.569
   RMS: 0.663
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.707
   RMS: 1.707
   RMS: 1.777
   RMS: 1.707
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 3.036
   RMS: 0.749
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.243
   RMS: 0.797
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.172
   RMS: 0.775
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.527
   RMS: 0.817
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 2.924
   RMS: 0.787
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.684
   RMS: 0.777
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.962
   RMS: 0.685
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.977
   RMS: 0.870
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 2.739
   RMS: 0.542
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.995
   RMS: 0.681
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.564
   RMS: 0.603
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.418
   RMS: 0.752
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 1.251
   RMS: 0.761
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.651
   RMS: 0.824
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.704
   RMS: 0.650
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.836
   RMS: 0.577
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 1.016
   RMS: 0.517
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 1.285
   RMS: 0.485
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 1.220
   RMS: 0.580
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.739
   RMS: 0.737
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.979
   RMS: 0.742
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.630
   RMS: 0.673
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.760
   RMS: 0.637
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.636
   RMS: 0.560
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.615
   RMS: 0.528
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.463
   RMS: 0.758
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.867
   RMS: 0.740
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.748
   RMS: 0.712
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 1.956
   RMS: 1.048
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.645
   RMS: 0.666
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.579
   RMS: 0.679
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.975
   RMS: 0.752
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.898
   RMS: 0.611
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.971
   RMS: 0.656
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.325
   RMS: 0.786
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 1.102
   RMS: 0.643
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 0.751
   RMS: 0.682
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.889
   RMS: 0.708
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.574
   RMS: 0.776
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.933
   RMS: 0.422
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 2.919
   RMS: 0.424
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.406
   RMS: 0.371
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.054
   RMS: 0.743
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.783
   RMS: 0.603
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.754
   RMS: 0.637
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.888
   RMS: 0.713
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.443
   RMS: 0.623
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.281
   RMS: 0.862
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.183
   RMS: 0.886
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.258
   RMS: 0.832
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.777
   RMS: 0.729
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 3.131
   RMS: 0.495
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 0.833
   RMS: 0.591
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.913
   RMS: 0.631
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.923
   RMS: 0.664
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.566
   RMS: 0.543
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.596
   RMS: 0.768
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.422
   RMS: 0.730
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.791
   RMS: 0.789
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.264
   RMS: 0.542
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.659
   RMS: 0.592
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.770
   RMS: 0.734
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.027
   RMS: 0.753
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.563
   RMS: 0.482
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.789
   RMS: 0.751
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.935
   RMS: 0.671
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.427
   RMS: 0.703
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.140
   RMS: 0.728
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.871
   RMS: 0.757
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 2.485
   RMS: 0.524
   Unrecognised keyword: pdb1ibg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 3.365
   RMS: 0.513
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1igf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.947
   RMS: 0.533
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.125
   RMS: 0.865
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.684
   RMS: 0.462
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.659
   RMS: 0.389
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 0.919
   RMS: 0.350
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.680
   RMS: 0.839
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.105
   RMS: 0.728
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.946
   RMS: 0.821
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.108
   RMS: 0.782
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.058
   RMS: 0.713
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.091
   RMS: 0.816
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.014
   RMS: 0.746
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.120
   RMS: 0.670
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.852
   RMS: 0.775
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.241
   RMS: 0.868
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.384
   RMS: 0.731
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 1.204
   RMS: 0.535
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 3.051
   RMS: 0.901
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.715
   RMS: 0.410
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.842
   RMS: 0.871
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 3.969
   RMS: 0.808
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.992
   RMS: 1.992
   RMS: 14.073
   RMS: 1.992
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.753
   RMS: 0.459
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.296
   RMS: 0.395
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.442
   RMS: 0.812
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 1.116
   RMS: 0.438
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.702
   RMS: 0.472
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.584
   RMS: 0.422
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 1.165
   RMS: 0.457
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 0.581
   RMS: 0.348
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.745
   RMS: 1.745
   RMS: 1.643
   RMS: 1.745
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 3.555
   RMS: 0.898
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.555
   RMS: 0.811
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.514
   RMS: 0.459
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 3.927
   RMS: 0.960
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.541
   RMS: 0.812
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.121
   RMS: 0.876
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.323
   RMS: 0.897
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.992
   RMS: 0.874
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 3.218
   RMS: 0.808
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.479
   RMS: 0.531
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.575
   RMS: 0.401
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.860
   RMS: 0.777
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.315
   RMS: 0.807
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.534
   RMS: 0.584
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 0.639
   RMS: 0.346
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.919
   RMS: 0.825
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.884
   RMS: 0.814
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.014
   RMS: 0.809
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.595
   RMS: 0.472
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.868
   RMS: 0.887
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.331
   RMS: 0.810
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.489
   RMS: 0.406
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.836
   RMS: 0.445
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.847
   RMS: 0.413
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.800
   RMS: 0.441
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 4.003
   RMS: 0.827
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.319
   RMS: 0.917
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 0.512
   RMS: 0.346
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.138
   RMS: 1.138
   RMS: 2.126
   RMS: 1.138
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.626
   RMS: 0.824
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.738
   RMS: 0.781
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.312
   RMS: 0.891
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.811
   RMS: 0.633
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.956
   RMS: 0.681
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.563
   RMS: 0.885
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.741
   RMS: 0.343
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.497
   RMS: 0.355
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.659
   RMS: 0.407
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.783
   RMS: 0.818
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.728
   RMS: 0.676
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.391
   RMS: 0.720
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.535
   RMS: 0.703
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.169
   RMS: 0.818
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.741
   RMS: 0.707
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.565
   RMS: 0.546
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 1.047
   RMS: 0.481
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.572
   RMS: 0.567
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.675
   RMS: 0.935
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 3.656
   RMS: 0.959
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.618
   RMS: 0.875
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.837
   RMS: 0.817
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.629
   RMS: 0.470
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.879
   RMS: 0.698
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.566
   RMS: 0.370
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.755
   RMS: 0.707
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.504
   RMS: 0.432
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 4.058
   RMS: 0.860
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.877
   RMS: 0.854
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.183
   RMS: 0.840
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.257
   RMS: 0.724
   Unrecognised keyword: pdb1igc_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.560
   RMS: 0.460
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.695
   RMS: 0.394
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.041
   RMS: 0.395
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.674
   RMS: 0.818
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.565
   RMS: 0.445
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.832
   RMS: 0.684
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.569
   RMS: 0.456
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.261
   RMS: 0.769
   Unrecognised keyword: pdb1igc_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.319
   RMS: 0.831
   Unrecognised keyword: pdb1igc_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 2.873
   RMS: 0.783
   Unrecognised keyword: pdb1igc_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 3.869
   RMS: 0.732
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1igj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.357
   RMS: 1.004
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 1.075
   RMS: 0.511
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.509
   RMS: 0.563
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.769
   RMS: 0.506
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 3.980
   RMS: 1.012
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.036
   RMS: 0.908
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 1.098
   RMS: 1.009
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 1.585
   RMS: 0.963
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.455
   RMS: 0.712
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 1.576
   RMS: 0.967
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.304
   RMS: 0.933
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.638
   RMS: 0.892
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 1.141
   RMS: 0.971
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 1.791
   RMS: 1.010
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.085
   RMS: 0.880
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.695
   RMS: 0.722
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.059
   RMS: 1.059
   RMS: 3.267
   RMS: 1.059
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.775
   RMS: 0.484
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 1.327
   RMS: 0.950
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 4.342
   RMS: 0.976
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.046
   RMS: 2.046
   RMS: 14.415
   RMS: 2.046
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.679
   RMS: 0.595
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 1.476
   RMS: 0.488
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 1.398
   RMS: 0.974
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 0.682
   RMS: 0.525
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.819
   RMS: 0.474
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.990
   RMS: 0.484
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.511
   RMS: 0.636
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.763
   RMS: 0.479
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.833
   RMS: 1.833
   RMS: 1.675
   RMS: 1.833
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 3.766
   RMS: 1.049
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 2.036
   RMS: 0.998
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 1.057
   RMS: 0.520
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.134
   RMS: 1.134
   RMS: 4.253
   RMS: 1.134
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 3.761
   RMS: 0.986
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 1.578
   RMS: 1.034
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 1.557
   RMS: 1.047
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 1.479
   RMS: 1.022
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 3.385
   RMS: 0.992
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 1.797
   RMS: 0.686
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.002
   RMS: 0.546
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.936
   RMS: 0.936
   RMS: 2.259
   RMS: 0.936
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 1.747
   RMS: 0.939
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.947
   RMS: 0.602
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.586
   RMS: 0.454
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 1.054
   RMS: 1.011
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 0.950
   RMS: 0.976
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.735
   RMS: 0.967
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.757
   RMS: 0.661
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.037
   RMS: 1.037
   RMS: 0.925
   RMS: 1.037
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.726
   RMS: 0.991
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.091
   RMS: 0.504
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 1.486
   RMS: 0.535
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.480
   RMS: 0.617
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.906
   RMS: 0.600
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 4.363
   RMS: 0.973
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.075
   RMS: 1.075
   RMS: 1.571
   RMS: 1.075
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.597
   RMS: 0.452
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.242
   RMS: 1.242
   RMS: 2.189
   RMS: 1.242
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 0.875
   RMS: 1.006
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 1.117
   RMS: 0.967
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.067
   RMS: 1.067
   RMS: 1.449
   RMS: 1.067
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.023
   RMS: 0.834
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.366
   RMS: 0.823
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.064
   RMS: 1.064
   RMS: 2.082
   RMS: 1.064
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.812
   RMS: 0.500
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.622
   RMS: 0.465
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 1.388
   RMS: 0.445
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 1.238
   RMS: 0.990
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.917
   RMS: 0.856
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 3.547
   RMS: 0.867
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.953
   RMS: 0.862
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 0.827
   RMS: 0.979
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.042
   RMS: 0.910
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.751
   RMS: 0.666
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.425
   RMS: 0.607
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.098
   RMS: 0.740
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.127
   RMS: 1.127
   RMS: 2.314
   RMS: 1.127
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.103
   RMS: 1.103
   RMS: 3.899
   RMS: 1.103
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 2.104
   RMS: 1.050
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.318
   RMS: 0.998
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 3.839
   RMS: 0.655
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.134
   RMS: 0.907
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.605
   RMS: 0.470
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.234
   RMS: 0.914
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.661
   RMS: 0.616
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.036
   RMS: 1.036
   RMS: 4.438
   RMS: 1.036
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.043
   RMS: 1.043
   RMS: 4.200
   RMS: 1.043
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.451
   RMS: 0.984
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.281
   RMS: 0.924
   Unrecognised keyword: pdb1igf_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.738
   RMS: 0.612
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.794
   RMS: 0.462
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.463
   RMS: 0.455
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 0.915
   RMS: 0.977
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.804
   RMS: 0.517
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.608
   RMS: 0.890
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.025
   RMS: 0.579
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 1.599
   RMS: 0.949
   Unrecognised keyword: pdb1igf_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 1.683
   RMS: 1.003
   Unrecognised keyword: pdb1igf_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 2.982
   RMS: 0.946
   Unrecognised keyword: pdb1igf_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 4.207
   RMS: 0.888
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1igm_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.605
   RMS: 0.814
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.008
   RMS: 0.888
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.402
   RMS: 0.885
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 3.506
   RMS: 0.762
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.850
   RMS: 0.657
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.417
   RMS: 0.580
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.540
   RMS: 0.539
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.001
   RMS: 1.001
   RMS: 0.716
   RMS: 1.001
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.563
   RMS: 0.619
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.463
   RMS: 0.594
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.724
   RMS: 0.753
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.495
   RMS: 0.839
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.771
   RMS: 0.533
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 1.061
   RMS: 0.594
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.843
   RMS: 0.798
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 2.976
   RMS: 0.930
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.453
   RMS: 0.903
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.808
   RMS: 0.862
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 3.584
   RMS: 0.570
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.033
   RMS: 2.033
   RMS: 13.325
   RMS: 2.033
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.760
   RMS: 0.743
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.072
   RMS: 0.846
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.748
   RMS: 0.510
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.718
   RMS: 0.885
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 1.324
   RMS: 0.963
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.967
   RMS: 0.911
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.629
   RMS: 0.817
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.830
   RMS: 0.866
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.539
   RMS: 1.539
   RMS: 1.011
   RMS: 1.539
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 3.368
   RMS: 0.609
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.905
   RMS: 0.671
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.427
   RMS: 0.885
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.503
   RMS: 0.598
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.550
   RMS: 0.550
   RMS: 3.095
   RMS: 0.550
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 0.809
   RMS: 0.588
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.526
   RMS: 0.816
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.669
   RMS: 0.783
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 2.944
   RMS: 0.770
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.642
   RMS: 0.878
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.179
   RMS: 0.855
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 1.179
   RMS: 0.517
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.806
   RMS: 0.728
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.070
   RMS: 1.070
   RMS: 0.843
   RMS: 1.070
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.896
   RMS: 0.854
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.505
   RMS: 0.835
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.735
   RMS: 0.813
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.108
   RMS: 0.829
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.430
   RMS: 0.729
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.990
   RMS: 0.557
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.647
   RMS: 0.536
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.829
   RMS: 0.868
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.811
   RMS: 0.840
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.825
   RMS: 0.743
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.647
   RMS: 0.713
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 3.785
   RMS: 0.613
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.453
   RMS: 0.619
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 1.058
   RMS: 0.898
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.204
   RMS: 0.973
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.638
   RMS: 0.707
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.529
   RMS: 0.531
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.515
   RMS: 0.572
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.601
   RMS: 0.661
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.939
   RMS: 0.660
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.839
   RMS: 0.603
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.944
   RMS: 0.817
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.074
   RMS: 0.847
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.849
   RMS: 0.885
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.613
   RMS: 0.555
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.764
   RMS: 0.816
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.241
   RMS: 0.795
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.777
   RMS: 0.800
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.001
   RMS: 0.648
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.781
   RMS: 0.665
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.992
   RMS: 0.792
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.609
   RMS: 0.857
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 0.975
   RMS: 0.685
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.403
   RMS: 0.726
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 3.313
   RMS: 0.689
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.967
   RMS: 0.691
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.541
   RMS: 0.522
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.526
   RMS: 0.764
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.471
   RMS: 0.669
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.206
   RMS: 0.847
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.592
   RMS: 0.628
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.961
   RMS: 0.727
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 3.698
   RMS: 0.512
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 3.493
   RMS: 0.573
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.446
   RMS: 0.547
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.733
   RMS: 0.761
   Unrecognised keyword: pdb1igj_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.786
   RMS: 0.753
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.704
   RMS: 0.856
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.631
   RMS: 0.853
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.601
   RMS: 0.819
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.009
   RMS: 0.910
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 0.974
   RMS: 0.930
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.721
   RMS: 0.856
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.454
   RMS: 0.512
   Unrecognised keyword: pdb1igj_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.547
   RMS: 0.625
   Unrecognised keyword: pdb1igj_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 2.891
   RMS: 0.881
   Unrecognised keyword: pdb1igj_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 3.573
   RMS: 0.915
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1igt_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 0.704
   RMS: 0.507
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 1.091
   RMS: 0.459
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 3.636
   RMS: 0.904
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.799
   RMS: 0.757
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.476
   RMS: 0.853
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.685
   RMS: 0.791
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.833
   RMS: 0.585
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.683
   RMS: 0.820
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.587
   RMS: 0.796
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.767
   RMS: 0.733
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.493
   RMS: 0.889
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.852
   RMS: 0.830
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.623
   RMS: 0.731
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.002
   RMS: 0.655
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 2.950
   RMS: 0.987
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 1.087
   RMS: 0.521
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 0.739
   RMS: 0.898
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 3.738
   RMS: 0.795
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.948
   RMS: 1.948
   RMS: 13.640
   RMS: 1.948
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.515
   RMS: 0.425
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 1.090
   RMS: 0.437
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.924
   RMS: 0.777
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 1.380
   RMS: 0.501
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 1.051
   RMS: 0.456
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.782
   RMS: 0.413
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.662
   RMS: 0.515
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 0.628
   RMS: 0.429
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.733
   RMS: 1.733
   RMS: 1.168
   RMS: 1.733
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.439
   RMS: 0.908
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.104
   RMS: 0.808
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 0.987
   RMS: 0.430
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 3.641
   RMS: 0.948
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 3.322
   RMS: 0.789
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.931
   RMS: 0.886
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.808
   RMS: 0.927
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.617
   RMS: 0.861
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.066
   RMS: 0.862
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.006
   RMS: 0.601
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.911
   RMS: 0.460
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.403
   RMS: 0.754
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.903
   RMS: 0.784
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.606
   RMS: 0.562
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 0.613
   RMS: 0.417
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 0.527
   RMS: 0.908
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.532
   RMS: 0.872
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.911
   RMS: 0.895
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.999
   RMS: 0.554
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.885
   RMS: 0.854
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.896
   RMS: 0.818
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.552
   RMS: 0.416
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 0.765
   RMS: 0.416
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.680
   RMS: 0.508
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.488
   RMS: 0.510
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.927
   RMS: 0.831
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.845
   RMS: 0.924
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.712
   RMS: 0.452
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.092
   RMS: 1.092
   RMS: 1.553
   RMS: 1.092
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.441
   RMS: 0.879
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.428
   RMS: 0.812
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.800
   RMS: 0.887
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.449
   RMS: 0.710
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.982
   RMS: 0.716
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 1.176
   RMS: 0.909
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.733
   RMS: 0.402
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.764
   RMS: 0.407
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 1.722
   RMS: 0.433
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.542
   RMS: 0.817
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.635
   RMS: 0.759
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 3.322
   RMS: 0.798
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.540
   RMS: 0.789
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.969
   RMS: 0.834
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.711
   RMS: 0.765
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.677
   RMS: 0.572
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.653
   RMS: 0.487
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.737
   RMS: 0.662
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.503
   RMS: 0.938
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 3.474
   RMS: 0.948
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.211
   RMS: 0.851
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.455
   RMS: 0.818
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.628
   RMS: 0.622
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.415
   RMS: 0.780
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.921
   RMS: 0.393
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.336
   RMS: 0.748
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.642
   RMS: 0.513
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.853
   RMS: 0.862
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.640
   RMS: 0.870
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.774
   RMS: 0.833
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.787
   RMS: 0.775
   Unrecognised keyword: pdb1igm_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.566
   RMS: 0.495
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.573
   RMS: 0.447
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.659
   RMS: 0.403
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 0.434
   RMS: 0.907
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.769
   RMS: 0.452
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.724
   RMS: 0.831
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.501
   RMS: 0.533
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.731
   RMS: 0.754
   Unrecognised keyword: pdb1igm_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.363
   RMS: 0.860
   Unrecognised keyword: pdb1igm_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 2.848
   RMS: 0.873
   Unrecognised keyword: pdb1igm_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.700
   RMS: 0.827
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ikf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 0.610
   RMS: 0.394
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.882
   RMS: 0.839
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.696
   RMS: 0.733
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.764
   RMS: 0.834
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.198
   RMS: 0.818
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.099
   RMS: 0.689
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.167
   RMS: 0.805
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.880
   RMS: 0.770
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.262
   RMS: 0.728
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.749
   RMS: 0.796
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.413
   RMS: 0.863
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.750
   RMS: 0.717
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 1.345
   RMS: 0.568
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.221
   RMS: 0.886
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.817
   RMS: 0.404
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.021
   RMS: 0.831
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 4.134
   RMS: 0.832
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.023
   RMS: 2.023
   RMS: 14.106
   RMS: 2.023
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.302
   RMS: 0.485
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 1.260
   RMS: 0.392
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.091
   RMS: 0.824
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.825
   RMS: 0.437
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.632
   RMS: 0.519
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.678
   RMS: 0.463
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 1.170
   RMS: 0.513
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.442
   RMS: 0.383
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.779
   RMS: 1.779
   RMS: 1.354
   RMS: 1.779
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.705
   RMS: 0.906
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.642
   RMS: 0.835
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.858
   RMS: 0.460
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 4.050
   RMS: 0.971
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 3.621
   RMS: 0.864
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.234
   RMS: 0.868
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.221
   RMS: 0.878
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.078
   RMS: 0.880
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.294
   RMS: 0.825
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.475
   RMS: 0.561
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.787
   RMS: 0.419
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.941
   RMS: 0.771
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.355
   RMS: 0.765
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.606
   RMS: 0.617
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.304
   RMS: 0.388
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.741
   RMS: 0.828
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.613
   RMS: 0.826
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.543
   RMS: 0.804
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.649
   RMS: 0.527
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.746
   RMS: 0.875
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.363
   RMS: 0.826
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.793
   RMS: 0.440
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.111
   RMS: 0.482
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 1.135
   RMS: 0.475
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.606
   RMS: 0.505
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 4.221
   RMS: 0.824
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.243
   RMS: 0.907
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.368
   RMS: 0.405
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.103
   RMS: 1.103
   RMS: 1.886
   RMS: 1.103
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.503
   RMS: 0.879
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.725
   RMS: 0.801
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.120
   RMS: 0.889
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.603
   RMS: 0.690
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.042
   RMS: 0.716
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.694
   RMS: 0.926
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 0.390
   RMS: 0.373
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.390
   RMS: 0.381
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 1.429
   RMS: 0.443
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.848
   RMS: 0.834
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.544
   RMS: 0.689
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 3.491
   RMS: 0.683
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.640
   RMS: 0.694
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.744
   RMS: 0.830
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.686
   RMS: 0.755
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 0.528
   RMS: 0.538
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 1.058
   RMS: 0.476
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.803
   RMS: 0.633
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.979
   RMS: 0.979
   RMS: 1.992
   RMS: 0.979
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 3.744
   RMS: 0.949
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.735
   RMS: 0.894
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.916
   RMS: 0.834
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 3.781
   RMS: 0.494
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.738
   RMS: 0.766
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 0.488
   RMS: 0.377
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.805
   RMS: 0.768
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 0.456
   RMS: 0.499
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 4.239
   RMS: 0.870
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 4.016
   RMS: 0.849
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.106
   RMS: 0.865
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.933
   RMS: 0.764
   Unrecognised keyword: pdb1igt_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.373
   RMS: 0.439
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.406
   RMS: 0.436
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.024
   RMS: 0.458
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.550
   RMS: 0.839
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.526
   RMS: 0.439
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.425
   RMS: 0.698
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.690
   RMS: 0.402
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.171
   RMS: 0.777
   Unrecognised keyword: pdb1igt_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.563
   RMS: 0.842
   Unrecognised keyword: pdb1igt_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 3.012
   RMS: 0.810
   Unrecognised keyword: pdb1igt_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 4.073
   RMS: 0.718
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1il1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 4.344
   RMS: 0.851
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 0.886
   RMS: 0.732
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.263
   RMS: 0.887
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.642
   RMS: 0.832
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.488
   RMS: 0.631
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.596
   RMS: 0.840
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.226
   RMS: 0.777
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 1.716
   RMS: 0.742
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.171
   RMS: 0.823
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.863
   RMS: 0.887
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.038
   RMS: 0.752
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 1.812
   RMS: 0.526
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.652
   RMS: 0.935
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.989
   RMS: 0.371
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.512
   RMS: 0.859
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 4.574
   RMS: 0.855
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.965
   RMS: 1.965
   RMS: 14.080
   RMS: 1.965
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.822
   RMS: 0.403
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.281
   RMS: 0.281
   RMS: 1.368
   RMS: 0.281
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.444
   RMS: 0.856
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 0.574
   RMS: 0.380
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.516
   RMS: 0.410
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 1.014
   RMS: 0.352
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.622
   RMS: 0.435
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.304
   RMS: 0.304
   RMS: 0.949
   RMS: 0.304
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.830
   RMS: 1.830
   RMS: 1.375
   RMS: 1.830
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 4.166
   RMS: 0.960
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 2.081
   RMS: 0.836
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.946
   RMS: 0.398
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.006
   RMS: 1.006
   RMS: 4.471
   RMS: 1.006
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 4.108
   RMS: 0.842
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.706
   RMS: 0.913
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.678
   RMS: 0.923
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.357
   RMS: 0.887
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.725
   RMS: 0.841
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 1.911
   RMS: 0.514
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 1.207
   RMS: 0.345
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 2.386
   RMS: 0.796
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.601
   RMS: 0.797
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.031
   RMS: 0.549
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.281
   RMS: 0.281
   RMS: 0.876
   RMS: 0.281
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.155
   RMS: 0.884
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.981
   RMS: 0.847
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.648
   RMS: 0.830
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.635
   RMS: 0.526
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 1.091
   RMS: 0.922
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.792
   RMS: 0.861
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.322
   RMS: 0.322
   RMS: 1.137
   RMS: 0.322
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 1.492
   RMS: 0.420
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 1.582
   RMS: 0.452
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.153
   RMS: 0.455
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 4.679
   RMS: 0.876
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.700
   RMS: 0.973
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.290
   RMS: 0.290
   RMS: 0.793
   RMS: 0.290
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.105
   RMS: 1.105
   RMS: 2.132
   RMS: 1.105
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.996
   RMS: 0.889
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.194
   RMS: 0.826
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 1.586
   RMS: 0.944
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.007
   RMS: 0.682
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.300
   RMS: 0.706
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 2.034
   RMS: 0.951
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 0.550
   RMS: 0.292
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 0.807
   RMS: 0.319
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 1.226
   RMS: 0.329
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.330
   RMS: 0.839
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.817
   RMS: 0.706
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.910
   RMS: 0.716
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 1.145
   RMS: 0.732
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.109
   RMS: 0.881
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.074
   RMS: 0.774
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.838
   RMS: 0.468
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 1.478
   RMS: 0.427
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.294
   RMS: 0.611
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 2.422
   RMS: 0.983
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.995
   RMS: 0.995
   RMS: 4.176
   RMS: 0.995
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 2.151
   RMS: 0.888
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.337
   RMS: 0.855
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 4.209
   RMS: 0.478
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.174
   RMS: 0.758
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.317
   RMS: 0.317
   RMS: 0.730
   RMS: 0.317
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.135
   RMS: 0.784
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.934
   RMS: 0.462
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 4.685
   RMS: 0.904
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 4.460
   RMS: 0.895
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.572
   RMS: 0.886
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 1.254
   RMS: 0.772
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.846
   RMS: 0.424
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.822
   RMS: 0.339
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 1.403
   RMS: 0.349
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.069
   RMS: 0.860
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.796
   RMS: 0.360
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.822
   RMS: 0.713
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 1.181
   RMS: 0.441
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.527
   RMS: 0.790
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 2.051
   RMS: 0.870
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.401
   RMS: 0.827
   Unrecognised keyword: pdb1ikf_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 4.532
   RMS: 0.805
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1iqd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 4.053
   RMS: 0.556
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 3.487
   RMS: 0.576
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 3.284
   RMS: 0.582
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 3.362
   RMS: 1.049
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.351
   RMS: 0.704
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 3.682
   RMS: 0.497
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 3.225
   RMS: 0.644
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.570
   RMS: 0.721
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.143
   RMS: 0.681
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 3.631
   RMS: 0.638
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 3.028
   RMS: 0.668
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.721
   RMS: 0.847
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.784
   RMS: 0.863
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 3.163
   RMS: 0.867
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.684
   RMS: 0.645
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.140
   RMS: 2.140
   RMS: 14.213
   RMS: 2.140
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.764
   RMS: 0.814
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 3.829
   RMS: 0.849
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.857
   RMS: 0.671
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 4.388
   RMS: 0.907
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.000
   RMS: 1.000
   RMS: 4.064
   RMS: 1.000
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 3.560
   RMS: 0.930
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.416
   RMS: 0.847
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.542
   RMS: 0.873
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.834
   RMS: 1.834
   RMS: 4.334
   RMS: 1.834
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.007
   RMS: 0.627
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.224
   RMS: 0.678
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 3.835
   RMS: 0.884
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 2.235
   RMS: 0.662
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.010
   RMS: 0.704
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 3.088
   RMS: 0.630
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 3.351
   RMS: 0.719
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 3.633
   RMS: 0.823
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 1.262
   RMS: 0.679
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 3.192
   RMS: 0.820
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 3.425
   RMS: 0.807
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 3.089
   RMS: 0.617
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 3.686
   RMS: 0.702
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 3.531
   RMS: 1.050
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.673
   RMS: 0.843
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.630
   RMS: 0.753
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.839
   RMS: 0.730
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 4.161
   RMS: 0.777
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 4.031
   RMS: 0.745
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 3.549
   RMS: 0.656
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 3.273
   RMS: 0.613
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.506
   RMS: 0.861
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.283
   RMS: 0.831
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.177
   RMS: 0.705
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 3.518
   RMS: 0.694
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.523
   RMS: 0.669
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 3.239
   RMS: 0.662
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 3.724
   RMS: 0.895
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 4.042
   RMS: 0.965
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.558
   RMS: 0.583
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 3.468
   RMS: 0.627
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.450
   RMS: 0.682
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 3.728
   RMS: 0.594
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 3.502
   RMS: 0.559
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.295
   RMS: 0.663
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 3.976
   RMS: 0.810
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.686
   RMS: 0.839
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 4.471
   RMS: 0.921
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.350
   RMS: 0.629
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.790
   RMS: 0.737
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 1.138
   RMS: 0.701
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.406
   RMS: 0.736
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.785
   RMS: 0.636
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 3.572
   RMS: 0.518
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 3.730
   RMS: 0.778
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 3.439
   RMS: 0.814
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 3.311
   RMS: 0.580
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 2.778
   RMS: 0.693
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.297
   RMS: 0.631
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 3.176
   RMS: 0.689
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 3.476
   RMS: 0.603
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.839
   RMS: 0.690
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 3.620
   RMS: 0.506
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 3.794
   RMS: 0.860
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 3.663
   RMS: 0.567
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.594
   RMS: 0.748
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.511
   RMS: 0.619
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.693
   RMS: 0.598
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 3.296
   RMS: 0.641
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 3.904
   RMS: 0.722
   Unrecognised keyword: pdb1il1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.645
   RMS: 0.718
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 3.712
   RMS: 0.892
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.584
   RMS: 0.899
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 3.522
   RMS: 0.732
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 3.730
   RMS: 0.914
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 3.858
   RMS: 0.897
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 3.393
   RMS: 0.922
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.619
   RMS: 0.615
   Unrecognised keyword: pdb1il1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 2.814
   RMS: 0.649
   Unrecognised keyword: pdb1il1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.833
   RMS: 0.782
   Unrecognised keyword: pdb1il1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.164
   RMS: 0.840
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1iqw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.704
   RMS: 0.505
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 1.108
   RMS: 0.458
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.951
   RMS: 0.910
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.059
   RMS: 0.574
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.635
   RMS: 0.388
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.209
   RMS: 0.663
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.683
   RMS: 0.753
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.394
   RMS: 0.540
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.067
   RMS: 0.430
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.668
   RMS: 0.668
   RMS: 1.401
   RMS: 0.668
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.347
   RMS: 0.824
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.384
   RMS: 0.693
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.255
   RMS: 0.817
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 4.092
   RMS: 0.572
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.051
   RMS: 2.051
   RMS: 13.639
   RMS: 2.051
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.609
   RMS: 0.644
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.109
   RMS: 0.707
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.650
   RMS: 0.537
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.295
   RMS: 0.754
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.002
   RMS: 0.889
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.974
   RMS: 0.820
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.078
   RMS: 0.666
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.879
   RMS: 0.756
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.769
   RMS: 1.769
   RMS: 0.902
   RMS: 1.769
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.876
   RMS: 0.629
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.447
   RMS: 0.576
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.303
   RMS: 0.733
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 3.950
   RMS: 0.605
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 3.681
   RMS: 0.529
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 1.231
   RMS: 0.570
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 1.007
   RMS: 0.699
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.948
   RMS: 0.658
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 3.379
   RMS: 0.647
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.347
   RMS: 0.733
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 1.290
   RMS: 0.721
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 1.718
   RMS: 0.482
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.062
   RMS: 0.598
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.873
   RMS: 0.974
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.771
   RMS: 0.704
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.611
   RMS: 0.727
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.471
   RMS: 0.703
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.432
   RMS: 0.753
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.165
   RMS: 0.687
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.043
   RMS: 0.561
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 1.148
   RMS: 0.462
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.998
   RMS: 0.750
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.201
   RMS: 0.783
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.309
   RMS: 0.624
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.786
   RMS: 0.610
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 4.369
   RMS: 0.624
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 1.098
   RMS: 0.617
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.869
   RMS: 0.740
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.305
   RMS: 0.896
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.772
   RMS: 0.527
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.787
   RMS: 0.528
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.861
   RMS: 0.635
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.450
   RMS: 0.408
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 1.174
   RMS: 0.450
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 1.499
   RMS: 0.629
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.530
   RMS: 0.653
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.937
   RMS: 0.728
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 1.500
   RMS: 0.761
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.920
   RMS: 0.475
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.578
   RMS: 0.689
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.694
   RMS: 0.682
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.988
   RMS: 0.750
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.595
   RMS: 0.595
   RMS: 0.624
   RMS: 0.595
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.729
   RMS: 0.467
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.881
   RMS: 0.654
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.856
   RMS: 0.689
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 1.157
   RMS: 0.518
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 2.093
   RMS: 0.713
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 3.803
   RMS: 0.649
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.510
   RMS: 0.627
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.853
   RMS: 0.487
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 4.034
   RMS: 0.708
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.598
   RMS: 0.424
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.050
   RMS: 0.767
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.757
   RMS: 0.403
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.948
   RMS: 0.681
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 4.238
   RMS: 0.513
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 3.986
   RMS: 0.461
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.932
   RMS: 0.570
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.448
   RMS: 0.597
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.743
   RMS: 0.626
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.596
   RMS: 0.759
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.860
   RMS: 0.761
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.742
   RMS: 0.754
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.962
   RMS: 0.803
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.821
   RMS: 0.847
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.959
   RMS: 0.790
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.858
   RMS: 0.461
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 1.947
   RMS: 0.575
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.212
   RMS: 0.815
   Unrecognised keyword: pdb1iqd_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 4.157
   RMS: 0.854
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jfq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.559
   RMS: 0.337
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 0.616
   RMS: 1.099
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.563
   RMS: 0.478
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.450
   RMS: 0.415
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.677
   RMS: 0.674
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.339
   RMS: 0.731
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 0.811
   RMS: 0.349
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.882
   RMS: 0.487
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.846
   RMS: 0.712
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 2.863
   RMS: 0.863
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.265
   RMS: 0.852
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.698
   RMS: 0.832
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 3.600
   RMS: 0.393
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.095
   RMS: 2.095
   RMS: 13.670
   RMS: 2.095
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.525
   RMS: 0.773
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.089
   RMS: 0.845
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 0.655
   RMS: 0.359
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.537
   RMS: 0.883
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.011
   RMS: 1.011
   RMS: 1.192
   RMS: 1.011
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 0.803
   RMS: 0.939
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.557
   RMS: 0.817
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 0.615
   RMS: 0.858
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.637
   RMS: 1.637
   RMS: 1.202
   RMS: 1.637
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 3.322
   RMS: 0.309
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.956
   RMS: 0.537
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.261
   RMS: 0.868
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.328
   RMS: 0.328
   RMS: 3.507
   RMS: 0.328
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 3.123
   RMS: 0.411
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.710
   RMS: 0.431
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.506
   RMS: 0.711
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.693
   RMS: 0.665
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 2.909
   RMS: 0.660
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.803
   RMS: 0.830
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.976
   RMS: 0.808
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.430
   RMS: 0.430
   RMS: 1.213
   RMS: 0.430
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.886
   RMS: 0.610
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.102
   RMS: 1.102
   RMS: 0.626
   RMS: 1.102
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.602
   RMS: 0.828
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.302
   RMS: 0.720
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.489
   RMS: 0.733
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.891
   RMS: 0.760
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.238
   RMS: 0.671
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.849
   RMS: 0.382
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.663
   RMS: 0.343
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.685
   RMS: 0.876
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.785
   RMS: 0.846
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.756
   RMS: 0.670
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.335
   RMS: 0.650
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 3.794
   RMS: 0.460
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.546
   RMS: 0.324
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.781
   RMS: 0.889
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.315
   RMS: 0.942
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.444
   RMS: 0.592
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 0.317
   RMS: 0.384
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.411
   RMS: 0.329
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.360
   RMS: 0.492
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.966
   RMS: 0.560
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.085
   RMS: 0.614
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.803
   RMS: 0.794
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.827
   RMS: 0.834
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.771
   RMS: 0.897
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 0.415
   RMS: 0.375
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.635
   RMS: 0.744
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.204
   RMS: 0.678
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.554
   RMS: 0.733
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.718
   RMS: 0.469
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.582
   RMS: 0.488
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.800
   RMS: 0.778
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.450
   RMS: 0.852
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.731
   RMS: 0.561
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.495
   RMS: 0.689
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.322
   RMS: 0.556
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 1.035
   RMS: 0.599
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.410
   RMS: 0.374
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.505
   RMS: 0.710
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.243
   RMS: 0.508
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.018
   RMS: 0.865
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.531
   RMS: 0.451
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.696
   RMS: 0.689
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 3.721
   RMS: 0.349
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.292
   RMS: 0.292
   RMS: 3.497
   RMS: 0.292
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.394
   RMS: 0.481
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.602
   RMS: 0.677
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.573
   RMS: 0.750
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 0.532
   RMS: 0.884
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.579
   RMS: 0.895
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.323
   RMS: 0.707
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.874
   RMS: 0.942
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.763
   RMS: 0.864
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.501
   RMS: 0.888
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.572
   RMS: 0.372
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.376
   RMS: 0.473
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 2.765
   RMS: 0.822
   Unrecognised keyword: pdb1iqw_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 3.589
   RMS: 0.846
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1jgu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.033
   RMS: 1.033
   RMS: 0.577
   RMS: 1.033
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.150
   RMS: 0.494
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.564
   RMS: 0.404
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.223
   RMS: 0.666
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.527
   RMS: 0.714
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.345
   RMS: 0.439
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 1.012
   RMS: 0.444
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.498
   RMS: 0.672
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 2.774
   RMS: 0.856
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.553
   RMS: 0.824
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.582
   RMS: 0.776
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 3.330
   RMS: 0.424
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.054
   RMS: 2.054
   RMS: 13.422
   RMS: 2.054
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.990
   RMS: 0.692
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.245
   RMS: 0.787
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 0.968
   RMS: 0.387
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.964
   RMS: 0.855
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 1.501
   RMS: 0.974
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 0.988
   RMS: 0.888
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.457
   RMS: 0.726
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.938
   RMS: 0.805
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.634
   RMS: 1.634
   RMS: 1.405
   RMS: 1.634
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 3.191
   RMS: 0.456
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.492
   RMS: 0.415
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.450
   RMS: 0.828
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 3.275
   RMS: 0.391
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 2.933
   RMS: 0.455
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.478
   RMS: 0.423
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 0.414
   RMS: 0.727
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.601
   RMS: 0.574
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 2.820
   RMS: 0.653
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 0.494
   RMS: 0.757
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 1.107
   RMS: 0.756
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.841
   RMS: 0.372
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.701
   RMS: 0.546
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.068
   RMS: 1.068
   RMS: 0.842
   RMS: 1.068
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.032
   RMS: 0.788
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.697
   RMS: 0.734
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.895
   RMS: 0.718
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.347
   RMS: 0.751
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 1.548
   RMS: 0.653
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 1.134
   RMS: 0.374
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 0.321
   RMS: 0.362
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.771
   RMS: 0.813
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.569
   RMS: 0.804
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.508
   RMS: 0.633
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.745
   RMS: 0.603
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 3.543
   RMS: 0.469
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.444
   RMS: 0.462
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.138
   RMS: 0.842
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.382
   RMS: 0.915
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.784
   RMS: 0.555
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.498
   RMS: 0.392
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.569
   RMS: 0.412
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.721
   RMS: 0.425
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 1.026
   RMS: 0.491
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.696
   RMS: 0.544
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.161
   RMS: 0.736
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.167
   RMS: 0.786
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 2.129
   RMS: 0.838
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.443
   RMS: 0.382
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.951
   RMS: 0.725
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 3.128
   RMS: 0.640
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.740
   RMS: 0.711
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 1.215
   RMS: 0.465
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.476
   RMS: 0.476
   RMS: 0.822
   RMS: 0.476
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.093
   RMS: 0.713
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.427
   RMS: 0.780
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.813
   RMS: 0.513
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 1.040
   RMS: 0.647
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.164
   RMS: 0.556
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.573
   RMS: 0.464
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.379
   RMS: 0.368
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 3.388
   RMS: 0.682
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.552
   RMS: 0.450
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 1.358
   RMS: 0.814
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.607
   RMS: 0.403
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.029
   RMS: 0.673
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 3.446
   RMS: 0.369
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.350
   RMS: 0.350
   RMS: 3.263
   RMS: 0.350
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.412
   RMS: 0.474
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.915
   RMS: 0.674
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.930
   RMS: 0.701
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.918
   RMS: 0.832
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.510
   RMS: 0.830
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.666
   RMS: 0.713
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.135
   RMS: 0.873
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.186
   RMS: 0.841
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.671
   RMS: 0.862
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 0.486
   RMS: 0.341
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 1.339
   RMS: 0.484
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 2.770
   RMS: 0.793
   Unrecognised keyword: pdb1jfq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 3.335
   RMS: 0.803
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1jhl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 0.610
   RMS: 1.009
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.015
   RMS: 1.015
   RMS: 0.652
   RMS: 1.015
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 0.563
   RMS: 0.948
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.154
   RMS: 1.154
   RMS: 0.575
   RMS: 1.154
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.032
   RMS: 1.032
   RMS: 0.832
   RMS: 1.032
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.882
   RMS: 0.891
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.702
   RMS: 0.833
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.135
   RMS: 1.135
   RMS: 2.871
   RMS: 1.135
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 1.414
   RMS: 0.712
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.116
   RMS: 1.116
   RMS: 0.756
   RMS: 1.116
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 3.531
   RMS: 1.017
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.043
   RMS: 2.043
   RMS: 13.480
   RMS: 2.043
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 0.949
   RMS: 0.693
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.020
   RMS: 0.619
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 1.072
   RMS: 0.993
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.814
   RMS: 0.736
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 1.272
   RMS: 0.629
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.727
   RMS: 0.628
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.892
   RMS: 0.726
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.830
   RMS: 0.665
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.852
   RMS: 1.852
   RMS: 1.453
   RMS: 1.852
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.156
   RMS: 1.156
   RMS: 3.342
   RMS: 1.156
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 0.925
   RMS: 1.021
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.267
   RMS: 0.542
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.182
   RMS: 1.182
   RMS: 3.511
   RMS: 1.182
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 3.080
   RMS: 1.024
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.064
   RMS: 1.064
   RMS: 0.395
   RMS: 1.064
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.061
   RMS: 1.061
   RMS: 0.630
   RMS: 1.061
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 0.720
   RMS: 1.020
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.072
   RMS: 1.072
   RMS: 2.889
   RMS: 1.072
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.885
   RMS: 0.862
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.066
   RMS: 0.708
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.185
   RMS: 0.947
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.773
   RMS: 0.947
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.644
   RMS: 0.636
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.972
   RMS: 0.620
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.130
   RMS: 1.130
   RMS: 0.698
   RMS: 1.130
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.080
   RMS: 1.080
   RMS: 0.908
   RMS: 1.080
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 1.207
   RMS: 1.096
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 1.400
   RMS: 0.852
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.056
   RMS: 1.056
   RMS: 0.878
   RMS: 1.056
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 0.556
   RMS: 1.026
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.709
   RMS: 0.650
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.507
   RMS: 0.658
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.735
   RMS: 0.740
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.828
   RMS: 0.806
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 3.658
   RMS: 0.993
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.179
   RMS: 1.179
   RMS: 0.644
   RMS: 1.179
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.972
   RMS: 0.636
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.218
   RMS: 1.218
   RMS: 1.510
   RMS: 1.218
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.104
   RMS: 1.104
   RMS: 0.729
   RMS: 1.104
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 0.513
   RMS: 1.024
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.115
   RMS: 1.115
   RMS: 0.748
   RMS: 1.115
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 0.638
   RMS: 0.921
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.775
   RMS: 0.861
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 0.907
   RMS: 1.063
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.981
   RMS: 0.646
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.998
   RMS: 0.641
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 1.823
   RMS: 0.669
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 0.412
   RMS: 1.019
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 0.709
   RMS: 0.967
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 3.225
   RMS: 1.052
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.028
   RMS: 1.028
   RMS: 0.754
   RMS: 1.028
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 0.985
   RMS: 1.034
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 0.463
   RMS: 0.985
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.933
   RMS: 0.756
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.393
   RMS: 0.671
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.768
   RMS: 0.877
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.061
   RMS: 1.061
   RMS: 1.355
   RMS: 1.061
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.096
   RMS: 1.096
   RMS: 3.319
   RMS: 1.096
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.051
   RMS: 1.051
   RMS: 0.903
   RMS: 1.051
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 0.547
   RMS: 1.039
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.462
   RMS: 0.868
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.993
   RMS: 0.993
   RMS: 0.610
   RMS: 0.993
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.159
   RMS: 0.618
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 0.645
   RMS: 0.991
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.957
   RMS: 0.778
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.066
   RMS: 1.066
   RMS: 3.648
   RMS: 1.066
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.093
   RMS: 1.093
   RMS: 3.464
   RMS: 1.093
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 0.461
   RMS: 1.025
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 0.916
   RMS: 0.971
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.795
   RMS: 0.688
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.770
   RMS: 0.609
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.743
   RMS: 0.607
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.165
   RMS: 1.165
   RMS: 0.684
   RMS: 1.165
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 1.000
   RMS: 0.591
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.025
   RMS: 1.025
   RMS: 1.242
   RMS: 1.025
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.646
   RMS: 0.703
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.757
   RMS: 0.943
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 1.391
   RMS: 1.049
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.087
   RMS: 1.087
   RMS: 2.817
   RMS: 1.087
   Unrecognised keyword: pdb1jgu_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.048
   RMS: 1.048
   RMS: 3.526
   RMS: 1.048
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1jn6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.492
   RMS: 0.577
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.276
   RMS: 0.774
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.460
   RMS: 0.800
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.441
   RMS: 0.463
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 1.027
   RMS: 0.454
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.524
   RMS: 0.652
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 2.824
   RMS: 0.845
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.572
   RMS: 0.830
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.582
   RMS: 0.829
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 3.380
   RMS: 0.450
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.065
   RMS: 2.065
   RMS: 13.458
   RMS: 2.065
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.965
   RMS: 0.752
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.294
   RMS: 0.782
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.921
   RMS: 0.410
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.947
   RMS: 0.869
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 1.486
   RMS: 1.018
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.993
   RMS: 0.912
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.421
   RMS: 0.751
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.936
   RMS: 0.824
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.625
   RMS: 1.625
   RMS: 1.380
   RMS: 1.625
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 3.255
   RMS: 0.512
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.529
   RMS: 0.531
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.461
   RMS: 0.820
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 3.316
   RMS: 0.465
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 3.004
   RMS: 0.508
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.519
   RMS: 0.449
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.454
   RMS: 0.869
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.599
   RMS: 0.583
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 2.879
   RMS: 0.731
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.524
   RMS: 0.804
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 1.082
   RMS: 0.752
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.891
   RMS: 0.458
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.708
   RMS: 0.565
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.097
   RMS: 1.097
   RMS: 0.852
   RMS: 1.097
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.009
   RMS: 0.804
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.682
   RMS: 0.760
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.846
   RMS: 0.778
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.288
   RMS: 0.757
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 1.538
   RMS: 0.676
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 1.152
   RMS: 0.446
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.387
   RMS: 0.493
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.776
   RMS: 0.856
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.610
   RMS: 0.812
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.561
   RMS: 0.675
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.716
   RMS: 0.661
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.610
   RMS: 0.457
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.526
   RMS: 0.500
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.128
   RMS: 0.863
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 1.391
   RMS: 0.934
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.790
   RMS: 0.715
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.475
   RMS: 0.444
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 0.562
   RMS: 0.433
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 0.689
   RMS: 0.599
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 1.065
   RMS: 0.632
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.793
   RMS: 0.702
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.120
   RMS: 0.741
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.165
   RMS: 0.799
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 2.149
   RMS: 0.848
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.453
   RMS: 0.468
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.941
   RMS: 0.847
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.180
   RMS: 0.685
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.725
   RMS: 0.784
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.559
   RMS: 0.559
   RMS: 1.196
   RMS: 0.559
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.818
   RMS: 0.629
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 1.063
   RMS: 0.721
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.445
   RMS: 0.819
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.809
   RMS: 0.649
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.114
   RMS: 0.766
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 3.218
   RMS: 0.605
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.613
   RMS: 0.555
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.355
   RMS: 0.444
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 3.450
   RMS: 0.713
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.521
   RMS: 0.634
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.355
   RMS: 0.828
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.609
   RMS: 0.617
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.020
   RMS: 0.737
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 3.498
   RMS: 0.493
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 3.312
   RMS: 0.452
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 0.454
   RMS: 0.557
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.864
   RMS: 0.789
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.914
   RMS: 0.744
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.892
   RMS: 0.843
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.414
   RMS: 0.838
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.633
   RMS: 0.808
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.118
   RMS: 0.881
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.127
   RMS: 0.875
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.672
   RMS: 0.818
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.465
   RMS: 0.455
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 1.406
   RMS: 0.496
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 2.821
   RMS: 0.897
   Unrecognised keyword: pdb1jhl_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 3.396
   RMS: 0.911
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1jps_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.712
   RMS: 0.574
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 0.242
   RMS: 0.608
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.861
   RMS: 0.488
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.980
   RMS: 0.478
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.864
   RMS: 0.632
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.101
   RMS: 0.784
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.435
   RMS: 0.737
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.807
   RMS: 0.777
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 3.712
   RMS: 0.500
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.053
   RMS: 2.053
   RMS: 13.483
   RMS: 2.053
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.693
   RMS: 0.674
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.079
   RMS: 0.741
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.640
   RMS: 0.516
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 1.628
   RMS: 0.780
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.207
   RMS: 0.915
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.877
   RMS: 0.852
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.616
   RMS: 0.718
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.787
   RMS: 0.780
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.678
   RMS: 1.678
   RMS: 0.992
   RMS: 1.678
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 3.553
   RMS: 0.509
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.925
   RMS: 0.570
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.352
   RMS: 0.797
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.609
   RMS: 0.524
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 3.311
   RMS: 0.495
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 0.800
   RMS: 0.537
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.569
   RMS: 0.616
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.515
   RMS: 0.737
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 3.119
   RMS: 0.572
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.785
   RMS: 0.725
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.082
   RMS: 0.725
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.232
   RMS: 0.506
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.657
   RMS: 0.642
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.030
   RMS: 1.030
   RMS: 0.762
   RMS: 1.030
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.810
   RMS: 0.746
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.450
   RMS: 0.663
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.551
   RMS: 0.634
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.902
   RMS: 0.699
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 1.326
   RMS: 0.658
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.004
   RMS: 0.510
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.655
   RMS: 0.456
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.751
   RMS: 0.777
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.805
   RMS: 0.777
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.862
   RMS: 0.600
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.611
   RMS: 0.568
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.965
   RMS: 0.590
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.645
   RMS: 0.514
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.931
   RMS: 0.790
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.239
   RMS: 0.910
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.650
   RMS: 0.459
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.421
   RMS: 0.436
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.533
   RMS: 0.528
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.377
   RMS: 0.377
   RMS: 0.396
   RMS: 0.377
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.991
   RMS: 0.400
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.020
   RMS: 0.561
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.769
   RMS: 0.706
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.988
   RMS: 0.756
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.807
   RMS: 0.798
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.552
   RMS: 0.422
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.649
   RMS: 0.612
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 3.412
   RMS: 0.583
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.723
   RMS: 0.647
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 0.917
   RMS: 0.570
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.669
   RMS: 0.360
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.878
   RMS: 0.666
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.527
   RMS: 0.743
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.893
   RMS: 0.441
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.534
   RMS: 0.734
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.480
   RMS: 0.677
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.978
   RMS: 0.639
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.436
   RMS: 0.421
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 3.718
   RMS: 0.654
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 0.312
   RMS: 0.385
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.150
   RMS: 0.786
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.493
   RMS: 0.398
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.887
   RMS: 0.628
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 3.841
   RMS: 0.443
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 3.626
   RMS: 0.389
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 0.528
   RMS: 0.492
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.551
   RMS: 0.546
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.700
   RMS: 0.648
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.596
   RMS: 0.797
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.409
   RMS: 0.816
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.502
   RMS: 0.612
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.905
   RMS: 0.857
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.867
   RMS: 0.802
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.681
   RMS: 0.812
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.380
   RMS: 0.466
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 1.654
   RMS: 0.538
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 3.022
   RMS: 0.712
   Unrecognised keyword: pdb1jn6_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.751
   RMS: 0.824
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1jrh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.644
   RMS: 0.602
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.359
   RMS: 0.780
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.015
   RMS: 0.698
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.508
   RMS: 0.657
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 2.704
   RMS: 0.812
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.584
   RMS: 0.765
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.606
   RMS: 0.781
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 3.268
   RMS: 0.701
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.019
   RMS: 2.019
   RMS: 13.472
   RMS: 2.019
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.078
   RMS: 0.705
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.345
   RMS: 0.746
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.082
   RMS: 0.730
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 2.026
   RMS: 0.757
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.544
   RMS: 0.809
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.000
   RMS: 0.776
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.563
   RMS: 0.745
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.990
   RMS: 0.729
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.697
   RMS: 1.697
   RMS: 1.535
   RMS: 1.697
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 3.155
   RMS: 0.742
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.464
   RMS: 0.767
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.435
   RMS: 0.743
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 3.225
   RMS: 0.804
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 2.906
   RMS: 0.715
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.434
   RMS: 0.765
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.530
   RMS: 0.611
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.718
   RMS: 0.909
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 2.783
   RMS: 0.521
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.646
   RMS: 0.733
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.102
   RMS: 0.704
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.825
   RMS: 0.710
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.790
   RMS: 0.795
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.836
   RMS: 0.860
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 1.085
   RMS: 0.703
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.821
   RMS: 0.620
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 0.984
   RMS: 0.582
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 1.426
   RMS: 0.659
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.580
   RMS: 0.601
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.204
   RMS: 0.730
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.376
   RMS: 0.680
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.806
   RMS: 0.737
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.530
   RMS: 0.667
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.479
   RMS: 0.569
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 0.828
   RMS: 0.598
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 3.487
   RMS: 0.739
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.594
   RMS: 0.741
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.167
   RMS: 0.754
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.084
   RMS: 1.084
   RMS: 1.499
   RMS: 1.084
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.883
   RMS: 0.613
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.591
   RMS: 0.689
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.679
   RMS: 0.751
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.803
   RMS: 0.528
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 1.087
   RMS: 0.580
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.762
   RMS: 0.646
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 1.233
   RMS: 0.684
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.199
   RMS: 0.687
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 2.212
   RMS: 0.782
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.478
   RMS: 0.712
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 1.027
   RMS: 0.475
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.102
   RMS: 0.636
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.780
   RMS: 0.605
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.284
   RMS: 0.704
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.859
   RMS: 0.436
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.138
   RMS: 0.700
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.441
   RMS: 0.688
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 0.795
   RMS: 0.522
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.007
   RMS: 0.798
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 3.137
   RMS: 0.850
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.562
   RMS: 0.813
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.456
   RMS: 0.679
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.355
   RMS: 0.612
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.665
   RMS: 0.500
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.394
   RMS: 0.689
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 0.688
   RMS: 0.531
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.078
   RMS: 0.571
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 3.386
   RMS: 0.719
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 3.207
   RMS: 0.693
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.524
   RMS: 0.769
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.007
   RMS: 0.497
   Unrecognised keyword: pdb1jps_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.002
   RMS: 0.618
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.004
   RMS: 0.785
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.586
   RMS: 0.789
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 0.755
   RMS: 0.577
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.199
   RMS: 0.805
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.275
   RMS: 0.819
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.696
   RMS: 0.804
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.637
   RMS: 0.709
   Unrecognised keyword: pdb1jps_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 1.293
   RMS: 0.754
   Unrecognised keyword: pdb1jps_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 2.729
   RMS: 0.622
   Unrecognised keyword: pdb1jps_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.289
   RMS: 0.663
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1r3j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.826
   RMS: 0.849
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.853
   RMS: 0.770
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 0.775
   RMS: 0.653
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 2.980
   RMS: 0.654
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.261
   RMS: 0.799
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.618
   RMS: 0.641
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 3.675
   RMS: 0.813
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.070
   RMS: 2.070
   RMS: 13.664
   RMS: 2.070
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.558
   RMS: 0.835
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.086
   RMS: 0.820
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.730
   RMS: 0.824
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.530
   RMS: 0.857
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.100
   RMS: 0.948
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 0.700
   RMS: 0.887
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.583
   RMS: 0.768
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.590
   RMS: 0.832
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.721
   RMS: 1.721
   RMS: 1.161
   RMS: 1.721
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 3.448
   RMS: 0.767
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.962
   RMS: 0.866
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.214
   RMS: 0.917
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.593
   RMS: 0.824
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.242
   RMS: 0.847
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.678
   RMS: 0.799
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.598
   RMS: 0.738
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 0.542
   RMS: 0.984
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.036
   RMS: 0.524
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.802
   RMS: 0.744
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.861
   RMS: 0.741
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.238
   RMS: 0.813
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.756
   RMS: 0.867
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 0.566
   RMS: 0.986
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.621
   RMS: 0.808
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.395
   RMS: 0.574
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.517
   RMS: 0.498
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 0.862
   RMS: 0.480
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.201
   RMS: 0.709
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.861
   RMS: 0.804
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.653
   RMS: 0.796
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.570
   RMS: 0.830
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.696
   RMS: 0.772
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.730
   RMS: 0.677
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.433
   RMS: 0.639
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.872
   RMS: 0.809
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.639
   RMS: 0.748
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.736
   RMS: 0.849
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.093
   RMS: 1.093
   RMS: 1.421
   RMS: 1.093
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.522
   RMS: 0.645
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.218
   RMS: 0.716
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.542
   RMS: 0.787
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 0.342
   RMS: 0.654
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 0.931
   RMS: 0.662
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.077
   RMS: 0.779
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.710
   RMS: 0.763
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.801
   RMS: 0.826
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.771
   RMS: 0.862
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.388
   RMS: 0.819
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 0.579
   RMS: 0.505
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.311
   RMS: 0.470
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.504
   RMS: 0.343
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.821
   RMS: 0.789
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.546
   RMS: 0.604
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.685
   RMS: 0.716
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.480
   RMS: 0.836
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.681
   RMS: 0.660
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 1.470
   RMS: 0.940
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 3.430
   RMS: 0.921
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.005
   RMS: 0.896
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.351
   RMS: 0.752
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 3.604
   RMS: 0.624
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.259
   RMS: 0.622
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 0.980
   RMS: 0.796
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.474
   RMS: 0.701
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.678
   RMS: 0.694
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.796
   RMS: 0.791
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 3.585
   RMS: 0.740
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.484
   RMS: 0.803
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.641
   RMS: 0.650
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.526
   RMS: 0.719
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.455
   RMS: 0.876
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 0.470
   RMS: 0.907
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 0.296
   RMS: 0.370
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 0.744
   RMS: 0.883
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.739
   RMS: 0.726
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.465
   RMS: 0.859
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.548
   RMS: 0.812
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 1.476
   RMS: 0.815
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 2.885
   RMS: 0.537
   Unrecognised keyword: pdb1jrh_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 3.682
   RMS: 0.589
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1kb5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.104
   RMS: 0.506
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.528
   RMS: 0.737
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 2.701
   RMS: 0.920
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.662
   RMS: 0.864
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.654
   RMS: 0.895
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 3.201
   RMS: 0.367
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.065
   RMS: 2.065
   RMS: 13.353
   RMS: 2.065
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.213
   RMS: 0.736
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.410
   RMS: 0.821
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 1.233
   RMS: 0.362
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 2.136
   RMS: 0.887
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.705
   RMS: 0.997
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.178
   RMS: 0.914
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.628
   RMS: 0.810
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.124
   RMS: 0.844
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.673
   RMS: 1.673
   RMS: 1.606
   RMS: 1.673
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 3.054
   RMS: 0.374
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.475
   RMS: 0.565
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 1.548
   RMS: 0.834
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 3.178
   RMS: 0.362
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 2.799
   RMS: 0.392
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 0.629
   RMS: 0.420
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.634
   RMS: 0.785
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.767
   RMS: 0.690
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 2.742
   RMS: 0.757
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 0.585
   RMS: 0.864
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.227
   RMS: 0.810
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.841
   RMS: 0.419
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.870
   RMS: 0.658
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.102
   RMS: 1.102
   RMS: 1.043
   RMS: 1.102
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.250
   RMS: 0.840
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.976
   RMS: 0.826
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.158
   RMS: 0.827
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.621
   RMS: 0.839
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 1.681
   RMS: 0.719
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 1.279
   RMS: 0.381
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 0.546
   RMS: 0.380
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 0.961
   RMS: 0.872
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 0.673
   RMS: 0.836
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.461
   RMS: 0.715
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.963
   RMS: 0.687
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 3.372
   RMS: 0.454
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.612
   RMS: 0.424
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 1.341
   RMS: 0.891
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 1.574
   RMS: 0.966
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.961
   RMS: 0.680
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.747
   RMS: 0.431
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.832
   RMS: 0.369
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.995
   RMS: 0.607
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.137
   RMS: 0.614
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.689
   RMS: 0.658
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.404
   RMS: 0.793
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.349
   RMS: 0.838
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 2.311
   RMS: 0.875
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.647
   RMS: 0.353
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 1.188
   RMS: 0.840
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.020
   RMS: 0.745
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.896
   RMS: 0.810
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.496
   RMS: 0.549
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.072
   RMS: 0.621
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.310
   RMS: 0.751
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.714
   RMS: 0.841
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.933
   RMS: 0.641
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.773
   RMS: 0.721
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 3.041
   RMS: 0.565
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.626
   RMS: 0.613
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 0.636
   RMS: 0.379
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 3.252
   RMS: 0.770
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.836
   RMS: 0.656
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.535
   RMS: 0.855
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.790
   RMS: 0.594
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 1.199
   RMS: 0.731
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 3.303
   RMS: 0.362
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 3.145
   RMS: 0.383
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.691
   RMS: 0.440
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.200
   RMS: 0.775
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.148
   RMS: 0.739
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.170
   RMS: 0.859
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.755
   RMS: 0.865
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.895
   RMS: 0.806
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.319
   RMS: 0.918
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 1.388
   RMS: 0.914
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.851
   RMS: 0.853
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.710
   RMS: 0.354
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 1.201
   RMS: 0.489
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 2.729
   RMS: 0.945
   Unrecognised keyword: pdb1r3j_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 3.179
   RMS: 0.974
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1kel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 1.144
   RMS: 0.664
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.030
   RMS: 0.825
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.779
   RMS: 0.691
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.858
   RMS: 0.822
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 3.896
   RMS: 0.488
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.086
   RMS: 2.086
   RMS: 13.854
   RMS: 2.086
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.786
   RMS: 0.652
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.079
   RMS: 0.717
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 1.411
   RMS: 0.447
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.222
   RMS: 0.779
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.778
   RMS: 0.900
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.536
   RMS: 0.811
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.147
   RMS: 0.687
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.612
   RMS: 0.756
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.661
   RMS: 1.661
   RMS: 1.583
   RMS: 1.661
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 3.523
   RMS: 0.564
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 1.433
   RMS: 0.515
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.476
   RMS: 0.700
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.866
   RMS: 0.563
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 3.458
   RMS: 0.512
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 1.013
   RMS: 0.495
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 1.208
   RMS: 0.791
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.854
   RMS: 0.584
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.162
   RMS: 0.679
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.413
   RMS: 0.743
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.771
   RMS: 0.720
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.745
   RMS: 0.412
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 1.151
   RMS: 0.569
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 0.441
   RMS: 0.986
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.756
   RMS: 0.695
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.901
   RMS: 0.737
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.908
   RMS: 0.730
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.090
   RMS: 0.766
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.658
   RMS: 0.639
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.773
   RMS: 0.486
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 1.198
   RMS: 0.455
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 0.508
   RMS: 0.737
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.699
   RMS: 0.750
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.746
   RMS: 0.625
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.854
   RMS: 0.605
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 3.933
   RMS: 0.537
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 1.190
   RMS: 0.566
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.593
   RMS: 0.753
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.995
   RMS: 0.897
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.571
   RMS: 0.583
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.698
   RMS: 0.422
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.248
   RMS: 0.540
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 0.753
   RMS: 0.447
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.784
   RMS: 0.473
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 1.389
   RMS: 0.632
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.767
   RMS: 0.677
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.560
   RMS: 0.687
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 1.554
   RMS: 0.747
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 0.679
   RMS: 0.409
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.627
   RMS: 0.761
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.373
   RMS: 0.685
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.594
   RMS: 0.744
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 1.168
   RMS: 0.532
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.655
   RMS: 0.487
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.683
   RMS: 0.635
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.909
   RMS: 0.697
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.617
   RMS: 0.503
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.572
   RMS: 0.763
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 3.596
   RMS: 0.634
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 1.507
   RMS: 0.534
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.777
   RMS: 0.437
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 3.599
   RMS: 0.686
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.834
   RMS: 0.513
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.669
   RMS: 0.753
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.607
   RMS: 0.466
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.599
   RMS: 0.666
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 3.994
   RMS: 0.467
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 3.816
   RMS: 0.438
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 1.082
   RMS: 0.478
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 1.217
   RMS: 0.695
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.602
   RMS: 0.626
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.720
   RMS: 0.761
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.018
   RMS: 0.743
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.700
   RMS: 0.774
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.662
   RMS: 0.802
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.997
   RMS: 0.875
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.571
   RMS: 0.780
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 1.143
   RMS: 0.404
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 1.228
   RMS: 0.522
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 2.877
   RMS: 0.841
   Unrecognised keyword: pdb1kb5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 3.829
   RMS: 0.855
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1ken_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 2.738
   RMS: 0.770
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 1.577
   RMS: 0.621
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.454
   RMS: 0.704
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 3.260
   RMS: 0.642
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.024
   RMS: 2.024
   RMS: 13.599
   RMS: 2.024
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.179
   RMS: 0.598
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 1.434
   RMS: 0.508
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.311
   RMS: 0.687
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 2.086
   RMS: 0.612
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 1.596
   RMS: 0.731
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 0.995
   RMS: 0.634
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.808
   RMS: 0.540
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 0.977
   RMS: 0.533
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.806
   RMS: 1.806
   RMS: 1.742
   RMS: 1.806
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.042
   RMS: 0.727
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.749
   RMS: 0.677
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 1.528
   RMS: 0.614
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 3.295
   RMS: 0.775
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 2.749
   RMS: 0.741
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.373
   RMS: 0.692
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.729
   RMS: 0.816
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.872
   RMS: 0.764
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 2.713
   RMS: 0.692
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.615
   RMS: 0.627
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.993
   RMS: 0.415
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.038
   RMS: 0.645
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.002
   RMS: 0.706
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.930
   RMS: 0.790
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 1.161
   RMS: 0.548
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.003
   RMS: 0.735
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 1.221
   RMS: 0.695
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.607
   RMS: 0.631
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.664
   RMS: 0.483
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 1.131
   RMS: 0.704
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.634
   RMS: 0.704
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.906
   RMS: 0.593
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.577
   RMS: 0.509
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.537
   RMS: 0.392
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.935
   RMS: 0.410
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.286
   RMS: 0.663
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.640
   RMS: 0.751
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.582
   RMS: 0.582
   RMS: 1.232
   RMS: 0.582
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.031
   RMS: 1.031
   RMS: 1.765
   RMS: 1.031
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.940
   RMS: 0.750
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.698
   RMS: 0.650
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.890
   RMS: 0.709
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.024
   RMS: 0.607
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.992
   RMS: 0.648
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.865
   RMS: 0.803
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 1.336
   RMS: 0.484
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.225
   RMS: 0.558
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 2.247
   RMS: 0.597
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.585
   RMS: 0.683
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 1.137
   RMS: 0.630
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 2.944
   RMS: 0.532
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.787
   RMS: 0.568
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.422
   RMS: 0.707
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.949
   RMS: 0.620
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 1.196
   RMS: 0.528
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.785
   RMS: 0.618
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.767
   RMS: 0.544
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 0.818
   RMS: 0.855
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 3.026
   RMS: 0.813
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.774
   RMS: 0.707
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.728
   RMS: 0.679
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 3.127
   RMS: 0.452
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.896
   RMS: 0.645
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 1.395
   RMS: 0.516
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.936
   RMS: 0.694
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 1.107
   RMS: 0.490
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 3.341
   RMS: 0.714
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.205
   RMS: 0.718
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.644
   RMS: 0.722
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.279
   RMS: 0.700
   Unrecognised keyword: pdb1kel_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.030
   RMS: 0.552
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.055
   RMS: 0.588
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 0.808
   RMS: 0.615
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.836
   RMS: 0.700
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.157
   RMS: 0.596
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.349
   RMS: 0.707
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.739
   RMS: 0.641
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.872
   RMS: 0.663
   Unrecognised keyword: pdb1kel_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.161
   RMS: 0.691
   Unrecognised keyword: pdb1kel_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 2.716
   RMS: 0.716
   Unrecognised keyword: pdb1kel_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.196
   RMS: 0.703
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1kfa_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 3.231
   RMS: 0.930
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 2.729
   RMS: 0.851
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.686
   RMS: 0.907
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.091
   RMS: 2.091
   RMS: 14.316
   RMS: 2.091
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 3.109
   RMS: 0.917
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 3.282
   RMS: 0.907
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 3.125
   RMS: 0.921
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.715
   RMS: 0.984
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.064
   RMS: 1.064
   RMS: 3.503
   RMS: 1.064
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 3.095
   RMS: 1.007
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 2.736
   RMS: 0.845
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 3.021
   RMS: 0.972
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.825
   RMS: 1.825
   RMS: 3.693
   RMS: 1.825
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 1.124
   RMS: 0.899
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 2.731
   RMS: 0.883
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 3.257
   RMS: 0.984
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 1.711
   RMS: 0.916
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 1.755
   RMS: 0.955
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 2.688
   RMS: 0.906
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 2.805
   RMS: 0.885
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 3.074
   RMS: 0.948
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.122
   RMS: 0.625
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 2.771
   RMS: 0.882
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 2.950
   RMS: 0.869
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 2.511
   RMS: 0.882
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 3.138
   RMS: 0.855
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 2.982
   RMS: 1.112
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 3.009
   RMS: 0.937
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 2.952
   RMS: 0.602
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 3.076
   RMS: 0.581
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 3.376
   RMS: 0.584
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 3.377
   RMS: 0.892
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.101
   RMS: 0.891
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 2.750
   RMS: 0.918
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 2.895
   RMS: 0.937
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 2.878
   RMS: 0.890
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 2.716
   RMS: 0.789
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 2.854
   RMS: 0.746
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 2.063
   RMS: 0.900
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 2.794
   RMS: 0.883
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.088
   RMS: 0.969
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.078
   RMS: 1.078
   RMS: 3.335
   RMS: 1.078
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 3.004
   RMS: 0.761
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 2.896
   RMS: 0.849
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 2.822
   RMS: 0.861
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 3.062
   RMS: 0.785
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.217
   RMS: 0.791
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 2.988
   RMS: 0.811
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 3.368
   RMS: 0.865
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 3.111
   RMS: 0.948
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 3.920
   RMS: 0.967
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 2.829
   RMS: 0.904
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.223
   RMS: 0.720
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 1.489
   RMS: 0.685
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 2.856
   RMS: 0.613
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.025
   RMS: 0.908
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 3.030
   RMS: 0.759
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 3.095
   RMS: 0.786
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 2.798
   RMS: 0.912
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 2.797
   RMS: 0.832
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 2.686
   RMS: 1.017
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.697
   RMS: 0.976
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 2.692
   RMS: 0.921
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 2.853
   RMS: 0.850
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.957
   RMS: 0.823
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 2.963
   RMS: 0.755
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.243
   RMS: 0.902
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.056
   RMS: 0.841
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 2.972
   RMS: 0.854
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.765
   RMS: 0.885
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.525
   RMS: 0.857
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 2.777
   RMS: 0.828
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.162
   RMS: 0.771
   Unrecognised keyword: pdb1ken_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.074
   RMS: 0.832
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 3.137
   RMS: 0.958
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 2.991
   RMS: 1.039
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 2.921
   RMS: 0.655
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 3.227
   RMS: 0.983
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 3.156
   RMS: 0.877
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 2.838
   RMS: 0.951
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 3.067
   RMS: 0.898
   Unrecognised keyword: pdb1ken_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 2.474
   RMS: 0.900
   Unrecognised keyword: pdb1ken_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.675
   RMS: 0.666
   Unrecognised keyword: pdb1ken_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 1.507
   RMS: 0.785
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1kiq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.196
   RMS: 0.877
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 4.284
   RMS: 0.866
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.009
   RMS: 2.009
   RMS: 14.262
   RMS: 2.009
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.953
   RMS: 0.473
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 1.306
   RMS: 0.371
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.787
   RMS: 0.859
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.852
   RMS: 0.400
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.733
   RMS: 0.457
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 0.788
   RMS: 0.411
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 1.627
   RMS: 0.492
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.756
   RMS: 0.383
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.807
   RMS: 1.807
   RMS: 1.896
   RMS: 1.807
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 3.662
   RMS: 0.944
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 2.023
   RMS: 0.870
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.410
   RMS: 0.410
   RMS: 0.602
   RMS: 0.410
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 4.285
   RMS: 1.010
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.668
   RMS: 0.845
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.494
   RMS: 0.903
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.665
   RMS: 0.908
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.353
   RMS: 0.904
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 3.351
   RMS: 0.813
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 1.813
   RMS: 0.546
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.819
   RMS: 0.466
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 2.272
   RMS: 0.794
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.667
   RMS: 0.806
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.845
   RMS: 0.613
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.289
   RMS: 0.289
   RMS: 0.877
   RMS: 0.289
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 1.287
   RMS: 0.838
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.289
   RMS: 0.819
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.238
   RMS: 0.830
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.489
   RMS: 0.583
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 0.718
   RMS: 0.914
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 1.731
   RMS: 0.846
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.939
   RMS: 0.406
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 1.263
   RMS: 0.486
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.247
   RMS: 0.529
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.136
   RMS: 0.499
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 4.132
   RMS: 0.891
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.593
   RMS: 0.943
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 0.622
   RMS: 0.295
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.128
   RMS: 1.128
   RMS: 2.461
   RMS: 1.128
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.892
   RMS: 0.825
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.143
   RMS: 0.804
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 1.675
   RMS: 0.946
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 1.203
   RMS: 0.655
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.076
   RMS: 0.667
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.938
   RMS: 0.942
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.988
   RMS: 0.374
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 0.554
   RMS: 0.342
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 1.289
   RMS: 0.345
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.195
   RMS: 0.828
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.951
   RMS: 0.702
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.453
   RMS: 0.724
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.905
   RMS: 0.735
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.294
   RMS: 0.873
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.067
   RMS: 0.739
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.718
   RMS: 0.495
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 1.489
   RMS: 0.463
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.968
   RMS: 0.602
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.046
   RMS: 1.046
   RMS: 2.005
   RMS: 1.046
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 3.846
   RMS: 1.004
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 2.074
   RMS: 0.933
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.352
   RMS: 0.850
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 3.642
   RMS: 0.554
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.301
   RMS: 0.733
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.473
   RMS: 0.422
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 1.177
   RMS: 0.738
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.646
   RMS: 0.524
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 4.355
   RMS: 0.880
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 4.180
   RMS: 0.858
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.540
   RMS: 0.862
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.638
   RMS: 0.765
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.803
   RMS: 0.459
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.934
   RMS: 0.399
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 1.587
   RMS: 0.389
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.032
   RMS: 0.844
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.642
   RMS: 0.465
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.015
   RMS: 0.735
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 0.966
   RMS: 0.475
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.695
   RMS: 0.801
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.303
   RMS: 0.853
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 2.939
   RMS: 0.835
   Unrecognised keyword: pdb1kfa_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 4.097
   RMS: 0.799
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1kn2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.455
   RMS: 0.842
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.126
   RMS: 2.126
   RMS: 13.876
   RMS: 2.126
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 0.885
   RMS: 0.867
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.354
   RMS: 0.833
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.260
   RMS: 0.841
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.735
   RMS: 0.873
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 1.308
   RMS: 0.983
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 0.745
   RMS: 0.925
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.740
   RMS: 0.797
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.651
   RMS: 0.881
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.848
   RMS: 1.848
   RMS: 1.687
   RMS: 1.848
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.101
   RMS: 0.861
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.993
   RMS: 0.868
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.208
   RMS: 0.932
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 3.463
   RMS: 0.874
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 2.933
   RMS: 0.884
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.533
   RMS: 0.857
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 0.836
   RMS: 0.852
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.804
   RMS: 0.951
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 2.802
   RMS: 0.738
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.814
   RMS: 0.899
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.600
   RMS: 0.780
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 1.258
   RMS: 0.816
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.074
   RMS: 0.858
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 0.661
   RMS: 1.023
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.820
   RMS: 0.841
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.844
   RMS: 0.798
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.004
   RMS: 0.707
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.349
   RMS: 0.667
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.306
   RMS: 0.794
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.890
   RMS: 0.837
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.812
   RMS: 0.828
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.610
   RMS: 0.873
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.544
   RMS: 0.812
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.369
   RMS: 0.730
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.656
   RMS: 0.713
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 3.457
   RMS: 0.846
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.763
   RMS: 0.851
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 0.878
   RMS: 0.884
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.144
   RMS: 1.144
   RMS: 1.878
   RMS: 1.144
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.675
   RMS: 0.842
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.485
   RMS: 0.814
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 0.907
   RMS: 0.858
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.854
   RMS: 0.772
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.932
   RMS: 0.807
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.121
   RMS: 0.926
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 1.101
   RMS: 0.795
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.878
   RMS: 0.865
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.898
   RMS: 0.898
   RMS: 2.038
   RMS: 0.898
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.439
   RMS: 0.857
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.941
   RMS: 0.684
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 2.992
   RMS: 0.557
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.410
   RMS: 0.605
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.227
   RMS: 0.854
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.798
   RMS: 0.769
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.844
   RMS: 0.786
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.782
   RMS: 0.880
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.429
   RMS: 0.754
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.033
   RMS: 1.004
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 3.178
   RMS: 0.967
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.040
   RMS: 0.879
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.611
   RMS: 0.847
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 3.196
   RMS: 0.732
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.757
   RMS: 0.752
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.056
   RMS: 0.829
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.785
   RMS: 0.801
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.720
   RMS: 0.777
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.534
   RMS: 0.838
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.378
   RMS: 0.825
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.715
   RMS: 0.880
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.203
   RMS: 0.774
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.726
   RMS: 0.830
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.805
   RMS: 0.896
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.803
   RMS: 0.906
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.554
   RMS: 0.628
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.835
   RMS: 0.890
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.006
   RMS: 0.956
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.407
   RMS: 0.913
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.942
   RMS: 0.834
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.971
   RMS: 0.859
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 2.641
   RMS: 0.784
   Unrecognised keyword: pdb1kiq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.351
   RMS: 0.718
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2gfb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.025
   RMS: 2.025
   RMS: 13.462
   RMS: 2.025
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.970
   RMS: 0.726
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 4.028
   RMS: 0.777
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 3.752
   RMS: 0.320
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 4.760
   RMS: 0.872
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.980
   RMS: 0.980
   RMS: 4.420
   RMS: 0.980
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.930
   RMS: 0.890
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 3.374
   RMS: 0.765
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 3.883
   RMS: 0.818
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.677
   RMS: 1.677
   RMS: 4.215
   RMS: 1.677
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 1.494
   RMS: 0.420
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 3.089
   RMS: 0.500
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 4.212
   RMS: 0.801
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.702
   RMS: 0.372
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 1.413
   RMS: 0.395
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 3.302
   RMS: 0.429
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.344
   RMS: 0.833
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 3.701
   RMS: 0.655
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.443
   RMS: 0.763
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.217
   RMS: 0.843
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.853
   RMS: 0.758
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 2.869
   RMS: 0.340
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 3.648
   RMS: 0.645
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 3.825
   RMS: 1.077
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.936
   RMS: 0.815
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 3.711
   RMS: 0.824
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 3.874
   RMS: 0.836
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 4.264
   RMS: 0.825
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 4.377
   RMS: 0.646
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.366
   RMS: 0.366
   RMS: 3.967
   RMS: 0.366
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 3.265
   RMS: 0.332
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.751
   RMS: 0.847
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.528
   RMS: 0.787
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.402
   RMS: 0.635
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.687
   RMS: 0.629
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.635
   RMS: 0.417
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.333
   RMS: 0.457
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 4.054
   RMS: 0.858
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.975
   RMS: 0.975
   RMS: 3.694
   RMS: 0.975
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.805
   RMS: 0.688
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 3.636
   RMS: 0.378
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 3.427
   RMS: 0.362
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 3.813
   RMS: 0.585
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 3.882
   RMS: 0.627
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.308
   RMS: 0.635
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 4.180
   RMS: 0.746
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 4.061
   RMS: 0.802
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 4.858
   RMS: 0.852
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 3.542
   RMS: 0.337
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 4.007
   RMS: 0.820
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.842
   RMS: 0.730
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 3.694
   RMS: 0.801
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 3.938
   RMS: 0.486
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 3.810
   RMS: 0.574
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 4.033
   RMS: 0.747
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 3.466
   RMS: 0.810
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.646
   RMS: 0.590
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.024
   RMS: 0.716
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 1.189
   RMS: 0.578
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 3.056
   RMS: 0.525
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 3.536
   RMS: 0.362
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 2.173
   RMS: 0.742
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 3.672
   RMS: 0.618
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 4.216
   RMS: 0.828
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 3.743
   RMS: 0.549
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 3.927
   RMS: 0.693
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 0.310
   RMS: 0.295
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 0.300
   RMS: 0.378
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 3.387
   RMS: 0.446
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 3.821
   RMS: 0.752
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.932
   RMS: 0.733
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 3.955
   RMS: 0.835
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.559
   RMS: 0.832
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.717
   RMS: 0.821
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 4.098
   RMS: 0.882
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 4.059
   RMS: 0.950
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.662
   RMS: 0.841
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 3.554
   RMS: 0.329
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 3.381
   RMS: 0.459
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 2.175
   RMS: 0.901
   Unrecognised keyword: pdb1kn2_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.882
   RMS: 0.920
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1l7i_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.967
   RMS: 1.967
   RMS: 13.916
   RMS: 1.967
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.920
   RMS: 1.920
   RMS: 13.208
   RMS: 1.920
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.078
   RMS: 2.078
   RMS: 13.537
   RMS: 2.078
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.022
   RMS: 2.022
   RMS: 14.393
   RMS: 2.022
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.985
   RMS: 1.985
   RMS: 14.027
   RMS: 1.985
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.950
   RMS: 1.950
   RMS: 13.869
   RMS: 1.950
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.976
   RMS: 1.976
   RMS: 13.596
   RMS: 1.976
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.967
   RMS: 1.967
   RMS: 13.985
   RMS: 1.967
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.528
   RMS: 2.528
   RMS: 12.946
   RMS: 2.528
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.164
   RMS: 2.164
   RMS: 14.305
   RMS: 2.164
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.041
   RMS: 2.041
   RMS: 13.215
   RMS: 2.041
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.990
   RMS: 1.990
   RMS: 14.041
   RMS: 1.990
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.087
   RMS: 2.087
   RMS: 13.445
   RMS: 2.087
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.019
   RMS: 2.019
   RMS: 13.633
   RMS: 2.019
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.109
   RMS: 2.109
   RMS: 13.611
   RMS: 2.109
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.106
   RMS: 2.106
   RMS: 13.359
   RMS: 2.106
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.115
   RMS: 2.115
   RMS: 13.344
   RMS: 2.115
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.062
   RMS: 2.062
   RMS: 13.917
   RMS: 2.062
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.932
   RMS: 1.932
   RMS: 13.275
   RMS: 1.932
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.008
   RMS: 2.008
   RMS: 14.277
   RMS: 2.008
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.027
   RMS: 2.027
   RMS: 13.148
   RMS: 2.027
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.056
   RMS: 2.056
   RMS: 13.079
   RMS: 2.056
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.028
   RMS: 2.028
   RMS: 13.865
   RMS: 2.028
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.989
   RMS: 1.989
   RMS: 14.121
   RMS: 1.989
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.120
   RMS: 2.120
   RMS: 13.676
   RMS: 2.120
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.106
   RMS: 2.106
   RMS: 13.808
   RMS: 2.106
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.100
   RMS: 2.100
   RMS: 14.011
   RMS: 2.100
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.014
   RMS: 2.014
   RMS: 14.190
   RMS: 2.014
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.134
   RMS: 2.134
   RMS: 13.856
   RMS: 2.134
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.069
   RMS: 2.069
   RMS: 13.284
   RMS: 2.069
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.958
   RMS: 1.958
   RMS: 13.809
   RMS: 1.958
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.944
   RMS: 1.944
   RMS: 13.547
   RMS: 1.944
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.970
   RMS: 1.970
   RMS: 13.658
   RMS: 1.970
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.982
   RMS: 1.982
   RMS: 13.944
   RMS: 1.982
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.110
   RMS: 2.110
   RMS: 14.002
   RMS: 2.110
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.105
   RMS: 2.105
   RMS: 13.317
   RMS: 2.105
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.974
   RMS: 1.974
   RMS: 14.129
   RMS: 1.974
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.191
   RMS: 2.191
   RMS: 12.770
   RMS: 2.191
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.124
   RMS: 2.124
   RMS: 13.801
   RMS: 2.124
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.080
   RMS: 2.080
   RMS: 13.719
   RMS: 2.080
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.097
   RMS: 2.097
   RMS: 13.520
   RMS: 2.097
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.024
   RMS: 2.024
   RMS: 13.685
   RMS: 2.024
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.017
   RMS: 2.017
   RMS: 13.501
   RMS: 2.017
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.020
   RMS: 2.020
   RMS: 12.805
   RMS: 2.020
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.943
   RMS: 1.943
   RMS: 13.828
   RMS: 1.943
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.992
   RMS: 1.992
   RMS: 14.133
   RMS: 1.992
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.967
   RMS: 1.967
   RMS: 13.746
   RMS: 1.967
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.097
   RMS: 2.097
   RMS: 13.699
   RMS: 2.097
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.032
   RMS: 2.032
   RMS: 13.672
   RMS: 2.032
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.117
   RMS: 2.117
   RMS: 14.345
   RMS: 2.117
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.098
   RMS: 2.098
   RMS: 13.984
   RMS: 2.098
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.103
   RMS: 2.103
   RMS: 13.993
   RMS: 2.103
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.070
   RMS: 2.070
   RMS: 13.767
   RMS: 2.070
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.958
   RMS: 1.958
   RMS: 13.988
   RMS: 1.958
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.969
   RMS: 1.969
   RMS: 13.497
   RMS: 1.969
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.060
   RMS: 2.060
   RMS: 14.095
   RMS: 2.060
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.142
   RMS: 2.142
   RMS: 13.355
   RMS: 2.142
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.187
   RMS: 2.187
   RMS: 13.793
   RMS: 2.187
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.078
   RMS: 2.078
   RMS: 13.167
   RMS: 2.078
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.089
   RMS: 2.089
   RMS: 13.589
   RMS: 2.089
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.041
   RMS: 2.041
   RMS: 14.461
   RMS: 2.041
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.066
   RMS: 2.066
   RMS: 13.638
   RMS: 2.066
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.990
   RMS: 1.990
   RMS: 14.162
   RMS: 1.990
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.031
   RMS: 2.031
   RMS: 13.472
   RMS: 2.031
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.010
   RMS: 2.010
   RMS: 14.127
   RMS: 2.010
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.080
   RMS: 2.080
   RMS: 13.567
   RMS: 2.080
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.084
   RMS: 2.084
   RMS: 13.604
   RMS: 2.084
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.077
   RMS: 2.077
   RMS: 13.467
   RMS: 2.077
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.058
   RMS: 2.058
   RMS: 13.546
   RMS: 2.058
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.002
   RMS: 2.002
   RMS: 13.929
   RMS: 2.002
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.956
   RMS: 1.956
   RMS: 13.823
   RMS: 1.956
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.979
   RMS: 1.979
   RMS: 13.560
   RMS: 1.979
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.114
   RMS: 2.114
   RMS: 13.871
   RMS: 2.114
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.002
   RMS: 2.002
   RMS: 13.980
   RMS: 2.002
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.077
   RMS: 2.077
   RMS: 14.150
   RMS: 2.077
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.992
   RMS: 1.992
   RMS: 13.879
   RMS: 1.992
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.048
   RMS: 2.048
   RMS: 13.232
   RMS: 2.048
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.157
   RMS: 2.157
   RMS: 14.174
   RMS: 2.157
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.128
   RMS: 2.128
   RMS: 14.542
   RMS: 2.128
   Unrecognised keyword: pdb2gfb_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 2.127
   RMS: 2.127
   RMS: 13.857
   RMS: 2.127
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1l7t_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 1.164
   RMS: 0.372
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.874
   RMS: 0.738
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.067
   RMS: 0.497
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 0.843
   RMS: 0.520
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.701
   RMS: 0.444
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.939
   RMS: 0.462
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.413
   RMS: 0.383
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.747
   RMS: 1.747
   RMS: 1.205
   RMS: 1.747
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 3.575
   RMS: 0.849
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 1.425
   RMS: 0.670
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 1.010
   RMS: 0.441
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.878
   RMS: 0.873
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 3.447
   RMS: 0.720
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 1.086
   RMS: 0.839
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 0.979
   RMS: 0.878
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.912
   RMS: 0.754
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 3.161
   RMS: 0.818
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 1.219
   RMS: 0.530
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.832
   RMS: 0.432
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 1.713
   RMS: 0.681
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.178
   RMS: 0.671
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.578
   RMS: 0.672
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.287
   RMS: 0.446
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.555
   RMS: 0.861
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.479
   RMS: 0.835
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.598
   RMS: 0.845
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.862
   RMS: 0.553
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 0.708
   RMS: 0.791
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.154
   RMS: 0.722
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 0.738
   RMS: 0.384
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 1.002
   RMS: 0.467
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.993
   RMS: 0.459
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.404
   RMS: 0.415
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 4.088
   RMS: 0.808
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 1.002
   RMS: 0.873
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.480
   RMS: 0.455
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.021
   RMS: 1.021
   RMS: 1.670
   RMS: 1.021
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.380
   RMS: 0.767
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.554
   RMS: 0.720
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.878
   RMS: 0.807
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 0.451
   RMS: 0.607
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.001
   RMS: 0.648
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.495
   RMS: 0.806
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 0.467
   RMS: 0.359
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.525
   RMS: 0.404
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.514
   RMS: 0.414
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.703
   RMS: 0.714
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.513
   RMS: 0.707
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 3.387
   RMS: 0.708
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.561
   RMS: 0.747
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.665
   RMS: 0.802
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 0.649
   RMS: 0.695
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.540
   RMS: 0.461
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.873
   RMS: 0.443
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.779
   RMS: 0.576
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.830
   RMS: 0.900
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.599
   RMS: 0.902
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.525
   RMS: 0.753
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.751
   RMS: 0.734
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 3.689
   RMS: 0.558
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.540
   RMS: 0.663
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.676
   RMS: 0.423
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.663
   RMS: 0.669
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.473
   RMS: 0.486
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 4.081
   RMS: 0.755
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.854
   RMS: 0.769
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.892
   RMS: 0.751
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.761
   RMS: 0.725
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 0.344
   RMS: 0.427
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.307
   RMS: 0.452
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.436
   RMS: 0.436
   RMS: 0.849
   RMS: 0.436
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.382
   RMS: 0.845
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.586
   RMS: 0.445
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.394
   RMS: 0.778
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.584
   RMS: 0.501
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.956
   RMS: 0.672
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.486
   RMS: 0.783
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 2.932
   RMS: 0.825
   Unrecognised keyword: pdb1l7i_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.917
   RMS: 0.827
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1lk3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.426
   RMS: 0.799
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 1.612
   RMS: 0.371
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 1.241
   RMS: 0.441
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 1.054
   RMS: 0.369
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 1.439
   RMS: 0.415
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.263
   RMS: 0.263
   RMS: 1.142
   RMS: 0.263
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.790
   RMS: 1.790
   RMS: 1.299
   RMS: 1.790
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 3.726
   RMS: 0.912
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.595
   RMS: 0.796
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 1.303
   RMS: 0.373
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 3.986
   RMS: 0.942
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 3.521
   RMS: 0.800
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.278
   RMS: 0.863
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 1.191
   RMS: 0.896
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.835
   RMS: 0.853
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 3.288
   RMS: 0.830
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.389
   RMS: 0.549
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 1.487
   RMS: 0.330
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 1.728
   RMS: 0.734
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.884
   RMS: 0.751
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.062
   RMS: 0.588
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.294
   RMS: 0.294
   RMS: 1.293
   RMS: 0.294
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.064
   RMS: 0.877
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.222
   RMS: 0.851
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.313
   RMS: 0.820
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.307
   RMS: 0.529
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.875
   RMS: 0.856
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.208
   RMS: 0.799
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 1.031
   RMS: 0.353
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.180
   RMS: 0.408
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 1.292
   RMS: 0.428
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 1.285
   RMS: 0.420
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 4.109
   RMS: 0.821
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 1.118
   RMS: 0.928
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.303
   RMS: 0.303
   RMS: 1.152
   RMS: 0.303
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 1.621
   RMS: 1.099
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.872
   RMS: 0.872
   RMS: 1.042
   RMS: 0.872
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.063
   RMS: 0.778
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.315
   RMS: 0.881
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 1.042
   RMS: 0.672
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.947
   RMS: 0.676
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.316
   RMS: 0.882
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.258
   RMS: 0.258
   RMS: 1.125
   RMS: 0.258
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 1.185
   RMS: 0.344
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.283
   RMS: 0.283
   RMS: 1.105
   RMS: 0.283
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.116
   RMS: 0.798
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.840
   RMS: 0.697
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.576
   RMS: 0.687
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 1.213
   RMS: 0.731
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.216
   RMS: 0.833
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.011
   RMS: 0.765
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 1.078
   RMS: 0.446
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 1.126
   RMS: 0.396
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.356
   RMS: 0.607
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 1.866
   RMS: 0.983
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 3.753
   RMS: 0.953
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.543
   RMS: 0.861
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.169
   RMS: 0.808
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 3.835
   RMS: 0.516
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.099
   RMS: 0.753
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.310
   RMS: 0.310
   RMS: 1.230
   RMS: 0.310
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.943
   RMS: 0.767
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.163
   RMS: 0.472
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 4.147
   RMS: 0.838
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.953
   RMS: 0.845
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.154
   RMS: 0.837
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 1.292
   RMS: 0.767
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 1.064
   RMS: 0.398
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.270
   RMS: 0.270
   RMS: 1.024
   RMS: 0.270
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 1.400
   RMS: 0.342
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.132
   RMS: 0.861
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.341
   RMS: 0.341
   RMS: 1.088
   RMS: 0.341
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.416
   RMS: 0.755
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 1.158
   RMS: 0.401
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.209
   RMS: 0.737
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.734
   RMS: 0.827
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.101
   RMS: 0.838
   Unrecognised keyword: pdb1l7t_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.974
   RMS: 0.802
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1lo0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.798
   RMS: 0.860
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.566
   RMS: 0.991
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.347
   RMS: 0.901
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 0.785
   RMS: 0.792
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.157
   RMS: 0.827
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.592
   RMS: 1.592
   RMS: 0.963
   RMS: 1.592
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 3.621
   RMS: 0.404
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 1.155
   RMS: 0.507
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.760
   RMS: 0.818
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 3.566
   RMS: 0.388
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 3.380
   RMS: 0.362
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 1.204
   RMS: 0.348
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.738
   RMS: 0.837
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 1.060
   RMS: 0.601
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.148
   RMS: 0.745
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.050
   RMS: 0.832
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.509
   RMS: 0.777
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 1.354
   RMS: 0.296
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 1.095
   RMS: 0.592
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.067
   RMS: 1.067
   RMS: 1.190
   RMS: 1.067
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.017
   RMS: 0.797
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.646
   RMS: 0.807
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.613
   RMS: 0.818
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.899
   RMS: 0.813
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 1.645
   RMS: 0.645
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.308
   RMS: 0.308
   RMS: 1.366
   RMS: 0.308
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.963
   RMS: 0.296
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.241
   RMS: 0.836
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.340
   RMS: 0.831
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.327
   RMS: 0.650
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 0.786
   RMS: 0.655
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 4.151
   RMS: 0.326
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.910
   RMS: 0.465
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.254
   RMS: 0.864
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.962
   RMS: 0.962
   RMS: 0.938
   RMS: 0.962
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.992
   RMS: 0.686
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 0.877
   RMS: 0.335
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.492
   RMS: 0.353
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.682
   RMS: 0.539
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 1.483
   RMS: 0.615
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 1.397
   RMS: 0.651
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.061
   RMS: 0.755
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.327
   RMS: 0.803
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.022
   RMS: 0.855
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.994
   RMS: 0.296
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.033
   RMS: 0.822
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 3.501
   RMS: 0.719
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.132
   RMS: 0.796
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.832
   RMS: 0.440
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 1.051
   RMS: 0.563
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.247
   RMS: 0.783
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.824
   RMS: 0.847
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 1.313
   RMS: 0.600
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.966
   RMS: 0.650
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 3.522
   RMS: 0.514
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 1.255
   RMS: 0.549
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.305
   RMS: 0.305
   RMS: 0.851
   RMS: 0.305
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 3.885
   RMS: 0.731
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.619
   RMS: 0.604
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 1.494
   RMS: 0.830
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.947
   RMS: 0.545
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.218
   RMS: 0.674
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 3.906
   RMS: 0.359
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 3.634
   RMS: 0.368
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.788
   RMS: 0.462
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.302
   RMS: 0.734
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.070
   RMS: 0.757
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.949
   RMS: 0.842
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.751
   RMS: 0.839
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.856
   RMS: 0.822
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.348
   RMS: 0.882
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 0.984
   RMS: 0.910
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.109
   RMS: 0.835
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.271
   RMS: 0.271
   RMS: 0.677
   RMS: 0.271
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 1.970
   RMS: 0.411
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 3.071
   RMS: 0.886
   Unrecognised keyword: pdb1lk3_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.844
   RMS: 0.889
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1lo4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.717
   RMS: 0.428
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 1.236
   RMS: 0.414
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.945
   RMS: 0.540
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 1.127
   RMS: 0.372
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.775
   RMS: 1.775
   RMS: 1.763
   RMS: 1.775
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 4.190
   RMS: 0.937
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 2.421
   RMS: 0.913
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.995
   RMS: 0.481
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.020
   RMS: 1.020
   RMS: 4.680
   RMS: 1.020
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 4.201
   RMS: 0.859
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.982
   RMS: 0.923
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 1.986
   RMS: 0.899
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.719
   RMS: 0.977
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.791
   RMS: 0.854
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 2.227
   RMS: 0.622
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 1.341
   RMS: 0.440
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 2.711
   RMS: 0.819
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.996
   RMS: 0.864
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 1.265
   RMS: 0.585
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 1.070
   RMS: 0.320
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.471
   RMS: 0.881
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.329
   RMS: 0.853
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.023
   RMS: 0.867
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.618
   RMS: 0.523
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.197
   RMS: 0.912
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 2.128
   RMS: 0.869
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 1.413
   RMS: 0.432
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 1.771
   RMS: 0.500
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.810
   RMS: 0.499
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 1.394
   RMS: 0.493
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 4.748
   RMS: 0.887
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.976
   RMS: 0.951
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 0.957
   RMS: 0.348
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.196
   RMS: 1.196
   RMS: 2.498
   RMS: 1.196
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 1.204
   RMS: 0.904
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.499
   RMS: 0.855
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.905
   RMS: 0.948
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 1.361
   RMS: 0.706
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.497
   RMS: 0.723
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.985
   RMS: 0.985
   RMS: 2.360
   RMS: 0.985
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.951
   RMS: 0.398
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.918
   RMS: 0.381
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 1.184
   RMS: 0.360
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 1.607
   RMS: 0.842
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 1.135
   RMS: 0.702
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.912
   RMS: 0.727
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.351
   RMS: 0.762
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.338
   RMS: 0.881
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.361
   RMS: 0.777
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.586
   RMS: 0.586
   RMS: 1.088
   RMS: 0.586
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 1.817
   RMS: 0.541
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 1.475
   RMS: 0.619
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 2.636
   RMS: 1.016
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 4.271
   RMS: 1.014
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 2.506
   RMS: 0.994
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 1.673
   RMS: 0.851
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 4.183
   RMS: 0.514
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.516
   RMS: 0.801
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 0.777
   RMS: 0.361
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.466
   RMS: 0.789
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 1.075
   RMS: 0.432
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 4.853
   RMS: 0.914
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 4.631
   RMS: 0.881
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.874
   RMS: 0.921
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 1.638
   RMS: 0.777
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 1.089
   RMS: 0.511
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 1.134
   RMS: 0.407
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 1.798
   RMS: 0.416
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.336
   RMS: 0.867
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.013
   RMS: 0.497
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.036
   RMS: 0.735
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 1.416
   RMS: 0.457
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.904
   RMS: 0.822
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 2.034
   RMS: 0.873
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 3.397
   RMS: 0.852
   Unrecognised keyword: pdb1lo0_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 4.651
   RMS: 0.821
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1pz5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.334
   RMS: 0.334
   RMS: 0.669
   RMS: 0.334
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.606
   RMS: 0.627
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.398
   RMS: 0.398
   RMS: 0.750
   RMS: 0.398
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.843
   RMS: 1.843
   RMS: 1.552
   RMS: 1.843
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.084
   RMS: 1.084
   RMS: 3.985
   RMS: 1.084
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 1.970
   RMS: 1.008
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.604
   RMS: 0.474
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.163
   RMS: 1.163
   RMS: 4.381
   RMS: 1.163
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 3.900
   RMS: 0.960
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 1.467
   RMS: 1.052
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.595
   RMS: 0.977
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.077
   RMS: 1.077
   RMS: 1.278
   RMS: 1.077
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.547
   RMS: 0.965
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 1.812
   RMS: 0.626
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.975
   RMS: 0.536
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 2.289
   RMS: 0.930
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.531
   RMS: 0.943
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.762
   RMS: 0.400
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.827
   RMS: 0.393
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 1.122
   RMS: 0.998
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.060
   RMS: 0.961
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 0.874
   RMS: 0.963
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 0.492
   RMS: 0.628
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.050
   RMS: 1.050
   RMS: 0.838
   RMS: 1.050
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.659
   RMS: 0.978
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.925
   RMS: 0.401
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.199
   RMS: 0.473
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 1.358
   RMS: 0.588
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.116
   RMS: 0.608
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 4.410
   RMS: 1.003
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.100
   RMS: 1.100
   RMS: 1.569
   RMS: 1.100
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 0.630
   RMS: 0.355
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.271
   RMS: 1.271
   RMS: 2.226
   RMS: 1.271
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 0.829
   RMS: 1.009
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.064
   RMS: 0.973
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.085
   RMS: 1.085
   RMS: 1.563
   RMS: 1.085
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.970
   RMS: 0.823
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.936
   RMS: 0.818
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 1.831
   RMS: 1.074
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.530
   RMS: 0.446
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.563
   RMS: 0.392
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 1.189
   RMS: 0.417
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.978
   RMS: 0.978
   RMS: 1.139
   RMS: 0.978
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 0.637
   RMS: 0.766
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.731
   RMS: 0.873
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.961
   RMS: 0.845
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.133
   RMS: 0.991
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 0.819
   RMS: 0.893
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.697
   RMS: 0.644
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 1.355
   RMS: 0.537
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 1.046
   RMS: 0.729
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.062
   RMS: 1.062
   RMS: 2.161
   RMS: 1.062
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.126
   RMS: 1.126
   RMS: 4.016
   RMS: 1.126
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.073
   RMS: 1.073
   RMS: 2.016
   RMS: 1.073
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 1.226
   RMS: 1.003
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 3.957
   RMS: 0.619
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 1.128
   RMS: 0.899
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.411
   RMS: 0.383
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.016
   RMS: 0.883
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.789
   RMS: 0.548
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 4.512
   RMS: 1.019
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 4.321
   RMS: 1.047
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 1.439
   RMS: 1.018
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 1.348
   RMS: 0.864
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 0.686
   RMS: 0.529
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.724
   RMS: 0.413
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 1.370
   RMS: 0.411
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 0.971
   RMS: 0.959
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 0.587
   RMS: 0.423
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.969
   RMS: 0.825
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.989
   RMS: 0.535
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.496
   RMS: 0.933
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 1.781
   RMS: 1.038
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 3.253
   RMS: 0.921
   Unrecognised keyword: pdb1lo4_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 4.341
   RMS: 0.849
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.199
   RMS: 0.562
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 0.387
   RMS: 0.325
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.796
   RMS: 1.796
   RMS: 1.564
   RMS: 1.796
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 3.539
   RMS: 1.012
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 1.456
   RMS: 0.903
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.705
   RMS: 0.389
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.074
   RMS: 1.074
   RMS: 3.937
   RMS: 1.074
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 3.381
   RMS: 0.873
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 0.851
   RMS: 0.955
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 1.117
   RMS: 0.963
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 0.893
   RMS: 0.961
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.914
   RMS: 0.914
   RMS: 3.127
   RMS: 0.914
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 1.298
   RMS: 0.540
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.598
   RMS: 0.437
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.757
   RMS: 0.835
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 1.142
   RMS: 0.843
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.245
   RMS: 0.448
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.657
   RMS: 0.330
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.854
   RMS: 0.947
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.936
   RMS: 0.903
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.022
   RMS: 0.901
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.811
   RMS: 0.539
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 0.478
   RMS: 0.960
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.136
   RMS: 0.900
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.337
   RMS: 0.337
   RMS: 0.529
   RMS: 0.337
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.632
   RMS: 0.363
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.809
   RMS: 0.497
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.794
   RMS: 0.534
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.888
   RMS: 0.903
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.035
   RMS: 1.035
   RMS: 1.064
   RMS: 1.035
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.288
   RMS: 0.288
   RMS: 0.463
   RMS: 0.288
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.225
   RMS: 1.225
   RMS: 1.993
   RMS: 1.225
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 0.510
   RMS: 0.957
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.599
   RMS: 0.880
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.160
   RMS: 0.994
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.709
   RMS: 0.746
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.553
   RMS: 0.770
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 1.366
   RMS: 1.012
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.323
   RMS: 0.323
   RMS: 0.627
   RMS: 0.323
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.275
   RMS: 0.275
   RMS: 0.407
   RMS: 0.275
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 1.462
   RMS: 0.340
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.602
   RMS: 0.879
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.449
   RMS: 0.744
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 3.339
   RMS: 0.817
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.513
   RMS: 0.779
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.997
   RMS: 0.943
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.401
   RMS: 0.823
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 0.486
   RMS: 0.563
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.903
   RMS: 0.490
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 0.544
   RMS: 0.671
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.016
   RMS: 1.016
   RMS: 1.596
   RMS: 1.016
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 3.582
   RMS: 1.058
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.486
   RMS: 0.972
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.815
   RMS: 0.909
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.533
   RMS: 0.569
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.801
   RMS: 0.849
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 0.515
   RMS: 0.333
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.697
   RMS: 0.822
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.521
   RMS: 0.463
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 4.020
   RMS: 0.945
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.959
   RMS: 0.959
   RMS: 3.850
   RMS: 0.959
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.950
   RMS: 0.922
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.166
   RMS: 0.832
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.407
   RMS: 0.479
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.359
   RMS: 0.359
   RMS: 0.487
   RMS: 0.359
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 1.020
   RMS: 0.345
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.589
   RMS: 0.917
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.379
   RMS: 0.379
   RMS: 0.402
   RMS: 0.379
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.946
   RMS: 0.772
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.502
   RMS: 0.473
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.138
   RMS: 0.848
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.287
   RMS: 0.948
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 2.916
   RMS: 0.880
   Unrecognised keyword: pdb1pz5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.846
   RMS: 0.840
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2hrp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 1.028
   RMS: 0.490
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.763
   RMS: 1.763
   RMS: 1.344
   RMS: 1.763
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.204
   RMS: 0.889
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.669
   RMS: 0.786
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 1.575
   RMS: 0.523
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 3.244
   RMS: 0.906
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 3.035
   RMS: 0.818
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.814
   RMS: 0.854
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 0.550
   RMS: 0.918
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 0.788
   RMS: 0.828
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 2.870
   RMS: 0.775
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.623
   RMS: 0.614
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 1.178
   RMS: 0.459
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.907
   RMS: 0.711
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.927
   RMS: 0.780
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.015
   RMS: 0.736
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 0.971
   RMS: 0.462
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.636
   RMS: 0.843
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.748
   RMS: 0.794
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.249
   RMS: 0.765
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.590
   RMS: 0.620
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.296
   RMS: 0.822
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.616
   RMS: 0.781
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.886
   RMS: 0.512
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.922
   RMS: 0.552
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.768
   RMS: 0.481
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 0.624
   RMS: 0.413
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 3.690
   RMS: 0.827
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.679
   RMS: 0.899
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 1.178
   RMS: 0.468
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 1.328
   RMS: 1.009
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.869
   RMS: 0.769
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.606
   RMS: 0.751
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.497
   RMS: 0.857
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.743
   RMS: 0.675
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.346
   RMS: 0.667
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.064
   RMS: 0.818
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 1.215
   RMS: 0.432
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.499
   RMS: 0.499
   RMS: 1.245
   RMS: 0.499
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 2.244
   RMS: 0.498
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.664
   RMS: 0.790
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.099
   RMS: 0.724
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 3.166
   RMS: 0.684
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.805
   RMS: 0.680
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.143
   RMS: 0.836
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.011
   RMS: 0.748
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 1.128
   RMS: 0.426
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.588
   RMS: 0.448
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.932
   RMS: 0.647
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 1.316
   RMS: 0.956
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 3.218
   RMS: 0.910
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.784
   RMS: 0.797
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.471
   RMS: 0.760
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 3.501
   RMS: 0.577
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.544
   RMS: 0.681
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.475
   RMS: 0.475
   RMS: 1.435
   RMS: 0.475
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.764
   RMS: 0.734
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 1.050
   RMS: 0.566
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.498
   RMS: 0.790
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.274
   RMS: 0.784
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.601
   RMS: 0.794
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.806
   RMS: 0.745
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.989
   RMS: 0.457
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.976
   RMS: 0.467
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.500
   RMS: 0.497
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.681
   RMS: 0.807
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 1.237
   RMS: 0.488
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.036
   RMS: 0.748
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.763
   RMS: 0.536
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.596
   RMS: 0.733
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.466
   RMS: 0.800
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 2.738
   RMS: 0.795
   Unrecognised keyword: pdb1mcp_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 3.367
   RMS: 0.797
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mfe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.796
   RMS: 1.796
   RMS: 1.468
   RMS: 1.796
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 3.440
   RMS: 0.913
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.412
   RMS: 0.813
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.826
   RMS: 0.401
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 3.857
   RMS: 0.976
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.310
   RMS: 0.833
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.888
   RMS: 0.877
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 1.017
   RMS: 0.895
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.903
   RMS: 0.876
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.054
   RMS: 0.868
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 1.201
   RMS: 0.507
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.327
   RMS: 0.327
   RMS: 0.517
   RMS: 0.327
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.711
   RMS: 0.764
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.195
   RMS: 0.778
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.338
   RMS: 0.523
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.295
   RMS: 0.295
   RMS: 0.356
   RMS: 0.295
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.685
   RMS: 0.896
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.747
   RMS: 0.880
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.883
   RMS: 0.850
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.449
   RMS: 0.449
   RMS: 0.797
   RMS: 0.449
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.478
   RMS: 0.873
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.122
   RMS: 0.817
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 0.565
   RMS: 0.325
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 0.767
   RMS: 0.391
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.797
   RMS: 0.463
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 0.504
   RMS: 0.457
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.872
   RMS: 0.834
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 0.974
   RMS: 0.937
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.300
   RMS: 0.300
   RMS: 0.351
   RMS: 0.300
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.158
   RMS: 1.158
   RMS: 1.892
   RMS: 1.158
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 0.273
   RMS: 0.899
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.486
   RMS: 0.807
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.999
   RMS: 0.901
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.599
   RMS: 0.690
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.731
   RMS: 0.722
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 1.411
   RMS: 0.923
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.284
   RMS: 0.284
   RMS: 0.572
   RMS: 0.284
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.296
   RMS: 0.296
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.285
   RMS: 0.285
   RMS: 1.519
   RMS: 0.285
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.554
   RMS: 0.830
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 0.486
   RMS: 0.692
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.240
   RMS: 0.704
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.315
   RMS: 0.730
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.846
   RMS: 0.831
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.494
   RMS: 0.782
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.454
   RMS: 0.532
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.884
   RMS: 0.454
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.480
   RMS: 0.617
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.973
   RMS: 0.973
   RMS: 1.612
   RMS: 0.973
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 3.493
   RMS: 0.969
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.485
   RMS: 0.884
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.742
   RMS: 0.841
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.476
   RMS: 0.458
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.661
   RMS: 0.771
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.282
   RMS: 0.282
   RMS: 0.475
   RMS: 0.282
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.685
   RMS: 0.780
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 0.296
   RMS: 0.425
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 3.971
   RMS: 0.879
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 3.782
   RMS: 0.882
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 0.868
   RMS: 0.877
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.027
   RMS: 0.784
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.175
   RMS: 0.408
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 0.322
   RMS: 0.330
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.284
   RMS: 0.284
   RMS: 0.917
   RMS: 0.284
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.353
   RMS: 0.870
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.366
   RMS: 0.339
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.634
   RMS: 0.684
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 0.369
   RMS: 0.385
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.052
   RMS: 0.766
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.220
   RMS: 0.850
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 2.829
   RMS: 0.861
   Unrecognised keyword: pdb2hrp_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 3.782
   RMS: 0.747
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1mh5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.665
   RMS: 1.665
   RMS: 4.131
   RMS: 1.665
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.755
   RMS: 1.755
   RMS: 1.642
   RMS: 1.755
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.823
   RMS: 1.823
   RMS: 1.809
   RMS: 1.823
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.691
   RMS: 1.691
   RMS: 4.049
   RMS: 1.691
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.635
   RMS: 1.635
   RMS: 3.840
   RMS: 1.635
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.650
   RMS: 1.650
   RMS: 1.713
   RMS: 1.650
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.786
   RMS: 1.786
   RMS: 1.259
   RMS: 1.786
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.773
   RMS: 1.773
   RMS: 1.231
   RMS: 1.773
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.704
   RMS: 1.704
   RMS: 3.605
   RMS: 1.704
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.760
   RMS: 1.760
   RMS: 1.456
   RMS: 1.760
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.805
   RMS: 1.805
   RMS: 1.880
   RMS: 1.805
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.669
   RMS: 1.669
   RMS: 1.867
   RMS: 1.669
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.724
   RMS: 1.724
   RMS: 1.197
   RMS: 1.724
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.860
   RMS: 1.860
   RMS: 1.477
   RMS: 1.860
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.762
   RMS: 1.762
   RMS: 1.439
   RMS: 1.762
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.752
   RMS: 1.752
   RMS: 1.118
   RMS: 1.752
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.736
   RMS: 1.736
   RMS: 1.078
   RMS: 1.736
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.758
   RMS: 1.758
   RMS: 1.181
   RMS: 1.758
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.689
   RMS: 1.689
   RMS: 1.709
   RMS: 1.689
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.665
   RMS: 1.665
   RMS: 1.580
   RMS: 1.665
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.667
   RMS: 1.667
   RMS: 1.430
   RMS: 1.667
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.811
   RMS: 1.811
   RMS: 1.527
   RMS: 1.811
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.803
   RMS: 1.803
   RMS: 1.599
   RMS: 1.803
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.723
   RMS: 1.723
   RMS: 1.663
   RMS: 1.723
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.732
   RMS: 1.732
   RMS: 1.341
   RMS: 1.732
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.609
   RMS: 1.609
   RMS: 4.596
   RMS: 1.609
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.704
   RMS: 1.704
   RMS: 1.316
   RMS: 1.704
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.793
   RMS: 1.793
   RMS: 1.548
   RMS: 1.793
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.969
   RMS: 1.969
   RMS: 1.078
   RMS: 1.969
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.778
   RMS: 1.778
   RMS: 1.275
   RMS: 1.778
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.606
   RMS: 1.606
   RMS: 1.319
   RMS: 1.606
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.604
   RMS: 1.604
   RMS: 1.226
   RMS: 1.604
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.682
   RMS: 1.682
   RMS: 1.090
   RMS: 1.682
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.677
   RMS: 1.677
   RMS: 1.490
   RMS: 1.677
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.674
   RMS: 1.674
   RMS: 1.483
   RMS: 1.674
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.772
   RMS: 1.772
   RMS: 1.157
   RMS: 1.772
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.753
   RMS: 1.753
   RMS: 1.592
   RMS: 1.753
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.803
   RMS: 1.803
   RMS: 1.777
   RMS: 1.803
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.671
   RMS: 1.671
   RMS: 1.447
   RMS: 1.671
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.742
   RMS: 1.742
   RMS: 1.153
   RMS: 1.742
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.788
   RMS: 1.788
   RMS: 3.925
   RMS: 1.788
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.738
   RMS: 1.738
   RMS: 1.526
   RMS: 1.738
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.671
   RMS: 1.671
   RMS: 1.405
   RMS: 1.671
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.683
   RMS: 1.683
   RMS: 1.405
   RMS: 1.683
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.803
   RMS: 1.803
   RMS: 1.494
   RMS: 1.803
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.825
   RMS: 1.825
   RMS: 1.319
   RMS: 1.825
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.725
   RMS: 1.725
   RMS: 1.765
   RMS: 1.725
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.681
   RMS: 1.681
   RMS: 2.255
   RMS: 1.681
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.711
   RMS: 1.711
   RMS: 3.946
   RMS: 1.711
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.778
   RMS: 1.778
   RMS: 1.734
   RMS: 1.778
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.610
   RMS: 1.610
   RMS: 1.298
   RMS: 1.610
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.728
   RMS: 1.728
   RMS: 4.290
   RMS: 1.728
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.706
   RMS: 1.706
   RMS: 1.104
   RMS: 1.706
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.786
   RMS: 1.786
   RMS: 1.648
   RMS: 1.786
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.678
   RMS: 1.678
   RMS: 1.114
   RMS: 1.678
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.671
   RMS: 1.671
   RMS: 1.575
   RMS: 1.671
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.671
   RMS: 1.671
   RMS: 4.360
   RMS: 1.671
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.647
   RMS: 1.647
   RMS: 4.120
   RMS: 1.647
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.667
   RMS: 1.667
   RMS: 1.337
   RMS: 1.667
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.730
   RMS: 1.730
   RMS: 0.918
   RMS: 1.730
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.773
   RMS: 1.773
   RMS: 1.352
   RMS: 1.773
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.763
   RMS: 1.763
   RMS: 1.202
   RMS: 1.763
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.794
   RMS: 1.794
   RMS: 1.199
   RMS: 1.794
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.710
   RMS: 1.710
   RMS: 1.301
   RMS: 1.710
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.818
   RMS: 1.818
   RMS: 1.486
   RMS: 1.818
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.702
   RMS: 1.702
   RMS: 1.333
   RMS: 1.702
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.738
   RMS: 1.738
   RMS: 1.482
   RMS: 1.738
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.660
   RMS: 1.660
   RMS: 0.985
   RMS: 1.660
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.698
   RMS: 1.698
   RMS: 2.410
   RMS: 1.698
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.737
   RMS: 1.737
   RMS: 3.580
   RMS: 1.737
   Unrecognised keyword: pdb1mfe_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.789
   RMS: 1.789
   RMS: 4.310
   RMS: 1.789
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1nlb_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.130
   RMS: 0.614
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 3.748
   RMS: 0.940
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 1.803
   RMS: 0.319
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.097
   RMS: 0.506
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.411
   RMS: 0.411
   RMS: 3.094
   RMS: 0.411
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.218
   RMS: 0.745
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.511
   RMS: 0.733
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 0.901
   RMS: 0.715
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 3.092
   RMS: 0.917
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 3.361
   RMS: 0.853
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 2.954
   RMS: 0.515
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 3.591
   RMS: 0.728
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.158
   RMS: 1.158
   RMS: 3.462
   RMS: 1.158
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 3.499
   RMS: 0.902
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.451
   RMS: 0.754
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 3.621
   RMS: 0.770
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 3.950
   RMS: 0.790
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 3.876
   RMS: 0.693
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 3.482
   RMS: 0.403
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 3.193
   RMS: 0.467
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 3.402
   RMS: 0.945
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 3.291
   RMS: 0.887
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 3.111
   RMS: 0.750
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 3.327
   RMS: 0.710
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.245
   RMS: 0.439
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.314
   RMS: 0.314
   RMS: 3.143
   RMS: 0.314
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 3.593
   RMS: 0.970
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 3.799
   RMS: 0.999
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 3.428
   RMS: 0.643
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 3.353
   RMS: 0.471
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 3.276
   RMS: 0.344
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.575
   RMS: 0.622
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.541
   RMS: 0.628
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.302
   RMS: 0.663
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.852
   RMS: 0.870
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 3.578
   RMS: 0.905
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 4.352
   RMS: 0.954
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.272
   RMS: 0.457
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 3.697
   RMS: 0.822
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.776
   RMS: 0.690
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 3.294
   RMS: 0.757
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 3.582
   RMS: 0.474
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 3.519
   RMS: 0.572
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.602
   RMS: 0.842
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.322
   RMS: 0.935
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.243
   RMS: 0.623
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 2.848
   RMS: 0.710
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 1.053
   RMS: 0.522
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 3.112
   RMS: 0.652
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 3.345
   RMS: 0.403
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 1.123
   RMS: 0.739
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.457
   RMS: 0.629
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.696
   RMS: 0.896
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.532
   RMS: 0.590
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.446
   RMS: 0.745
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 1.393
   RMS: 0.448
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 1.359
   RMS: 0.399
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 3.201
   RMS: 0.479
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 3.699
   RMS: 0.771
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 3.525
   RMS: 0.805
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 3.592
   RMS: 0.950
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 3.451
   RMS: 0.947
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.380
   RMS: 0.738
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 3.645
   RMS: 1.002
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.923
   RMS: 0.923
   RMS: 3.624
   RMS: 0.923
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.931
   RMS: 0.931
   RMS: 3.289
   RMS: 0.931
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.482
   RMS: 0.458
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 2.742
   RMS: 0.486
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.248
   RMS: 0.886
   Unrecognised keyword: pdb1mh5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 0.934
   RMS: 0.896
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1mhp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.885
   RMS: 0.835
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.015
   RMS: 0.510
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 2.804
   RMS: 0.515
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.769
   RMS: 0.539
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.589
   RMS: 0.882
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.396
   RMS: 0.396
   RMS: 0.959
   RMS: 0.396
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 2.770
   RMS: 0.787
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.581
   RMS: 0.753
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 1.546
   RMS: 0.764
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.522
   RMS: 0.474
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.892
   RMS: 0.468
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.099
   RMS: 1.099
   RMS: 1.304
   RMS: 1.099
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.475
   RMS: 0.829
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 1.089
   RMS: 0.810
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.258
   RMS: 0.835
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 1.735
   RMS: 0.856
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 2.001
   RMS: 0.715
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 1.583
   RMS: 0.530
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.451
   RMS: 0.517
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.235
   RMS: 0.805
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.830
   RMS: 0.830
   RMS: 0.962
   RMS: 0.830
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.871
   RMS: 0.667
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 1.154
   RMS: 0.653
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.563
   RMS: 0.563
   RMS: 3.434
   RMS: 0.563
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 0.695
   RMS: 0.622
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.604
   RMS: 0.876
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.317
   RMS: 0.919
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.245
   RMS: 0.709
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.965
   RMS: 0.504
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.770
   RMS: 0.494
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 1.119
   RMS: 0.498
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 1.438
   RMS: 0.628
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.719
   RMS: 0.645
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.598
   RMS: 0.736
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.638
   RMS: 0.787
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.549
   RMS: 0.855
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.463
   RMS: 0.463
   RMS: 0.889
   RMS: 0.463
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.398
   RMS: 0.833
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.138
   RMS: 0.718
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 1.208
   RMS: 0.831
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.570
   RMS: 0.574
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 1.250
   RMS: 0.571
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.561
   RMS: 0.716
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.737
   RMS: 0.802
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 1.237
   RMS: 0.583
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 1.027
   RMS: 0.713
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.046
   RMS: 0.674
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 0.325
   RMS: 0.326
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.790
   RMS: 0.517
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.410
   RMS: 0.734
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.941
   RMS: 0.558
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.840
   RMS: 0.841
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 1.006
   RMS: 0.526
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.497
   RMS: 0.744
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 3.220
   RMS: 0.516
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 3.038
   RMS: 0.507
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.731
   RMS: 0.573
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.149
   RMS: 0.760
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.405
   RMS: 0.768
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.383
   RMS: 0.868
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.783
   RMS: 0.845
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.127
   RMS: 0.863
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.619
   RMS: 0.859
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.949
   RMS: 0.949
   RMS: 1.604
   RMS: 0.949
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.910
   RMS: 0.910
   RMS: 1.134
   RMS: 0.910
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.694
   RMS: 0.453
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.570
   RMS: 0.570
   RMS: 1.586
   RMS: 0.570
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 2.840
   RMS: 0.911
   Unrecognised keyword: pdb1nlb_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.163
   RMS: 0.896
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1mj8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 4.204
   RMS: 0.987
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.733
   RMS: 0.809
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.410
   RMS: 0.897
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.619
   RMS: 0.938
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.261
   RMS: 0.890
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.384
   RMS: 0.863
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 1.821
   RMS: 0.640
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.911
   RMS: 0.452
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 2.202
   RMS: 0.769
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 1.540
   RMS: 0.800
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.723
   RMS: 0.621
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.389
   RMS: 0.389
   RMS: 0.952
   RMS: 0.389
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.254
   RMS: 0.900
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.213
   RMS: 0.875
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 1.221
   RMS: 0.894
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.430
   RMS: 0.575
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.919
   RMS: 0.874
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.640
   RMS: 0.828
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.844
   RMS: 0.421
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 1.057
   RMS: 0.403
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 1.137
   RMS: 0.512
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 1.179
   RMS: 0.522
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 4.159
   RMS: 0.842
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 1.595
   RMS: 0.948
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.357
   RMS: 0.357
   RMS: 0.710
   RMS: 0.357
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.145
   RMS: 1.145
   RMS: 2.381
   RMS: 1.145
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 0.878
   RMS: 0.881
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.096
   RMS: 0.820
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.654
   RMS: 0.912
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.091
   RMS: 0.687
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.964
   RMS: 0.689
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 1.781
   RMS: 0.912
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.876
   RMS: 0.363
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.354
   RMS: 0.354
   RMS: 0.630
   RMS: 0.354
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.355
   RMS: 0.355
   RMS: 1.445
   RMS: 0.355
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.098
   RMS: 0.803
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.844
   RMS: 0.779
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 3.548
   RMS: 0.784
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 0.920
   RMS: 0.820
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.386
   RMS: 0.867
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.933
   RMS: 0.759
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.816
   RMS: 0.515
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 1.333
   RMS: 0.400
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.922
   RMS: 0.619
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.017
   RMS: 1.017
   RMS: 1.924
   RMS: 1.017
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 3.849
   RMS: 0.983
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.955
   RMS: 0.881
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.208
   RMS: 0.848
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 3.742
   RMS: 0.629
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.212
   RMS: 0.789
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 0.589
   RMS: 0.395
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.987
   RMS: 0.767
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.800
   RMS: 0.542
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.864
   RMS: 0.864
   RMS: 4.298
   RMS: 0.864
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 4.128
   RMS: 0.893
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.495
   RMS: 0.849
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.531
   RMS: 0.803
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.833
   RMS: 0.452
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.947
   RMS: 0.419
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 1.412
   RMS: 0.399
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 1.040
   RMS: 0.933
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 0.750
   RMS: 0.448
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.167
   RMS: 0.835
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 0.931
   RMS: 0.524
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.563
   RMS: 0.776
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.440
   RMS: 0.835
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.040
   RMS: 0.899
   Unrecognised keyword: pdb1mhp_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 4.104
   RMS: 0.889
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1mnu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.448
   RMS: 0.448
   RMS: 1.849
   RMS: 0.448
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 3.314
   RMS: 0.393
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.258
   RMS: 0.825
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 3.639
   RMS: 0.660
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 1.679
   RMS: 0.738
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.167
   RMS: 0.941
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.866
   RMS: 0.896
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 2.767
   RMS: 0.473
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 3.574
   RMS: 0.680
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.245
   RMS: 1.245
   RMS: 3.803
   RMS: 1.245
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 3.853
   RMS: 0.966
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.590
   RMS: 0.802
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 3.720
   RMS: 0.816
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 4.111
   RMS: 0.837
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 4.327
   RMS: 0.780
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 3.982
   RMS: 0.388
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 3.202
   RMS: 0.429
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.001
   RMS: 1.001
   RMS: 3.705
   RMS: 1.001
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 3.547
   RMS: 0.940
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.407
   RMS: 0.802
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 3.590
   RMS: 0.763
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 2.268
   RMS: 0.466
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 3.291
   RMS: 0.324
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.030
   RMS: 1.030
   RMS: 4.004
   RMS: 1.030
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.933
   RMS: 0.933
   RMS: 3.454
   RMS: 0.933
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.754
   RMS: 0.679
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 3.578
   RMS: 0.443
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.300
   RMS: 0.300
   RMS: 3.303
   RMS: 0.300
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.704
   RMS: 0.635
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 3.929
   RMS: 0.658
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.303
   RMS: 0.615
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 4.101
   RMS: 0.908
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 4.030
   RMS: 0.969
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.007
   RMS: 1.007
   RMS: 4.823
   RMS: 1.007
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 3.507
   RMS: 0.427
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.951
   RMS: 0.891
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 2.162
   RMS: 0.736
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.663
   RMS: 0.840
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 3.812
   RMS: 0.469
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 3.768
   RMS: 0.623
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.987
   RMS: 0.847
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 3.375
   RMS: 0.948
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 3.637
   RMS: 0.673
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.140
   RMS: 0.703
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 1.546
   RMS: 0.513
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 2.992
   RMS: 0.531
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 3.447
   RMS: 0.385
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 2.643
   RMS: 0.829
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 3.559
   RMS: 0.641
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 4.196
   RMS: 0.976
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 3.665
   RMS: 0.587
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.879
   RMS: 0.838
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.397
   RMS: 0.397
   RMS: 0.948
   RMS: 0.397
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.349
   RMS: 0.349
   RMS: 0.572
   RMS: 0.349
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.323
   RMS: 0.457
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.646
   RMS: 0.809
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.883
   RMS: 0.861
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 3.893
   RMS: 0.992
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.996
   RMS: 0.996
   RMS: 3.448
   RMS: 0.996
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 3.648
   RMS: 0.811
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 4.084
   RMS: 1.057
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 3.941
   RMS: 0.992
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.990
   RMS: 0.990
   RMS: 3.630
   RMS: 0.990
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 3.446
   RMS: 0.414
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 3.482
   RMS: 0.469
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 2.219
   RMS: 0.940
   Unrecognised keyword: pdb1mj8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.342
   RMS: 0.984
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1mvu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 2.826
   RMS: 0.489
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 2.911
   RMS: 0.827
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 3.298
   RMS: 0.667
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.997
   RMS: 0.741
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 2.747
   RMS: 0.820
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.302
   RMS: 0.802
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.442
   RMS: 0.442
   RMS: 2.644
   RMS: 0.442
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 3.304
   RMS: 0.632
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.068
   RMS: 1.068
   RMS: 3.321
   RMS: 1.068
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.423
   RMS: 0.796
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 3.293
   RMS: 0.805
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 3.505
   RMS: 0.805
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 3.851
   RMS: 0.825
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 3.881
   RMS: 0.675
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.309
   RMS: 0.458
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 2.888
   RMS: 0.385
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.319
   RMS: 0.832
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.071
   RMS: 0.828
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 2.942
   RMS: 0.685
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.207
   RMS: 0.687
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 1.094
   RMS: 0.496
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 2.810
   RMS: 0.528
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 3.527
   RMS: 0.842
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 3.439
   RMS: 0.983
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 3.275
   RMS: 0.701
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 3.172
   RMS: 0.393
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 3.010
   RMS: 0.441
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 3.400
   RMS: 0.509
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 3.278
   RMS: 0.608
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 2.909
   RMS: 0.679
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 3.699
   RMS: 0.744
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.502
   RMS: 0.794
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 4.231
   RMS: 0.843
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.307
   RMS: 0.307
   RMS: 3.075
   RMS: 0.307
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.511
   RMS: 0.812
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.179
   RMS: 0.753
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.187
   RMS: 0.840
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.533
   RMS: 0.533
   RMS: 3.455
   RMS: 0.533
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 3.331
   RMS: 0.560
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.515
   RMS: 0.764
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 3.108
   RMS: 0.835
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 3.151
   RMS: 0.562
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 2.555
   RMS: 0.687
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.655
   RMS: 0.655
   RMS: 0.914
   RMS: 0.655
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 2.785
   RMS: 0.588
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 3.172
   RMS: 0.399
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.287
   RMS: 0.762
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 3.270
   RMS: 0.607
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 3.637
   RMS: 0.849
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 3.342
   RMS: 0.520
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.390
   RMS: 0.696
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 1.341
   RMS: 0.401
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 1.383
   RMS: 0.424
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 2.922
   RMS: 0.503
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 3.478
   RMS: 0.690
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.398
   RMS: 0.768
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 3.428
   RMS: 0.837
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.235
   RMS: 0.839
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 3.234
   RMS: 0.820
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 3.527
   RMS: 0.911
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 3.566
   RMS: 0.932
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.169
   RMS: 0.870
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 3.186
   RMS: 0.400
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.502
   RMS: 0.502
   RMS: 2.716
   RMS: 0.502
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 1.931
   RMS: 0.907
   Unrecognised keyword: pdb1mnu_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.169
   RMS: 0.970
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1nc2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.645
   RMS: 0.861
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.831
   RMS: 0.647
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 2.708
   RMS: 0.757
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.745
   RMS: 0.824
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 0.987
   RMS: 0.818
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.370
   RMS: 0.370
   RMS: 1.027
   RMS: 0.370
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.930
   RMS: 0.630
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.124
   RMS: 1.124
   RMS: 0.758
   RMS: 1.124
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.054
   RMS: 0.853
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.843
   RMS: 0.805
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.070
   RMS: 0.826
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.428
   RMS: 0.823
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.547
   RMS: 0.667
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.018
   RMS: 0.380
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.518
   RMS: 0.402
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 0.780
   RMS: 0.905
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.474
   RMS: 0.871
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.568
   RMS: 0.745
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.850
   RMS: 0.726
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.257
   RMS: 0.257
   RMS: 3.377
   RMS: 0.257
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.607
   RMS: 0.453
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 1.096
   RMS: 0.916
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.026
   RMS: 1.026
   RMS: 1.655
   RMS: 1.026
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 0.835
   RMS: 0.687
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.586
   RMS: 0.388
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.777
   RMS: 0.407
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 0.855
   RMS: 0.576
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.908
   RMS: 0.600
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 0.878
   RMS: 0.638
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 1.209
   RMS: 0.823
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 1.099
   RMS: 0.844
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 2.092
   RMS: 0.909
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 0.429
   RMS: 0.388
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.962
   RMS: 0.874
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.003
   RMS: 0.706
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.713
   RMS: 0.807
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 1.192
   RMS: 0.372
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.706
   RMS: 0.580
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.086
   RMS: 0.788
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.546
   RMS: 0.879
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.616
   RMS: 0.616
   RMS: 0.676
   RMS: 0.616
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 1.050
   RMS: 0.625
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.423
   RMS: 0.423
   RMS: 3.094
   RMS: 0.423
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.755
   RMS: 0.585
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 0.607
   RMS: 0.361
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 3.204
   RMS: 0.721
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.760
   RMS: 0.630
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.283
   RMS: 0.865
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.829
   RMS: 0.584
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.000
   RMS: 0.753
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 3.403
   RMS: 0.440
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 3.241
   RMS: 0.422
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.485
   RMS: 0.477
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.129
   RMS: 0.835
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.920
   RMS: 0.776
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.943
   RMS: 0.891
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 0.771
   RMS: 0.886
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.731
   RMS: 0.821
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 1.106
   RMS: 0.934
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 1.295
   RMS: 0.899
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.645
   RMS: 0.876
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 0.833
   RMS: 0.352
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 1.182
   RMS: 0.431
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 2.656
   RMS: 0.937
   Unrecognised keyword: pdb1mvu_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 3.272
   RMS: 0.904
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1nca_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 0.711
   RMS: 1.009
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 2.796
   RMS: 0.614
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.491
   RMS: 0.974
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.292
   RMS: 0.886
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.809
   RMS: 0.842
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.705
   RMS: 0.871
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 0.964
   RMS: 1.008
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.867
   RMS: 0.867
   RMS: 1.069
   RMS: 0.867
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.679
   RMS: 0.723
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.884
   RMS: 0.641
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 1.311
   RMS: 0.755
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 1.662
   RMS: 0.824
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.160
   RMS: 0.769
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.311
   RMS: 0.780
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 0.985
   RMS: 0.900
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.866
   RMS: 0.847
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.823
   RMS: 0.753
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.777
   RMS: 0.779
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 3.617
   RMS: 0.862
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.281
   RMS: 0.780
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 1.200
   RMS: 0.929
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.089
   RMS: 1.089
   RMS: 1.107
   RMS: 1.089
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 0.880
   RMS: 0.740
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.634
   RMS: 0.825
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.327
   RMS: 0.831
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.719
   RMS: 0.666
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 1.148
   RMS: 0.610
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.833
   RMS: 0.778
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.192
   RMS: 0.860
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.251
   RMS: 0.917
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 2.054
   RMS: 0.957
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.622
   RMS: 0.817
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.990
   RMS: 0.473
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.141
   RMS: 0.727
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.922
   RMS: 0.666
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.075
   RMS: 0.845
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.900
   RMS: 0.618
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.886
   RMS: 0.886
   RMS: 1.187
   RMS: 0.886
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.467
   RMS: 0.891
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.016
   RMS: 0.707
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 1.317
   RMS: 0.929
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 3.156
   RMS: 0.930
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.659
   RMS: 0.922
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.591
   RMS: 0.788
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 3.445
   RMS: 0.806
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.568
   RMS: 0.675
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.447
   RMS: 0.860
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.743
   RMS: 0.667
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.122
   RMS: 0.736
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 3.477
   RMS: 0.796
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.262
   RMS: 0.753
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.331
   RMS: 0.838
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.759
   RMS: 0.510
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.003
   RMS: 0.779
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.940
   RMS: 0.924
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.643
   RMS: 0.947
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.755
   RMS: 0.642
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.238
   RMS: 0.970
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.201
   RMS: 0.915
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 0.835
   RMS: 0.947
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.444
   RMS: 0.801
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.494
   RMS: 0.890
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 2.792
   RMS: 0.758
   Unrecognised keyword: pdb1nc2_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 3.387
   RMS: 0.761
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1ncw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 3.131
   RMS: 0.894
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.828
   RMS: 0.846
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 1.127
   RMS: 0.837
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 1.212
   RMS: 0.598
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.379
   RMS: 0.471
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.142
   RMS: 1.142
   RMS: 0.813
   RMS: 1.142
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 1.032
   RMS: 0.866
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.740
   RMS: 0.892
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.870
   RMS: 0.935
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 1.190
   RMS: 0.942
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.292
   RMS: 0.812
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.933
   RMS: 0.645
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.689
   RMS: 0.661
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 0.695
   RMS: 0.875
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.729
   RMS: 0.906
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.718
   RMS: 0.772
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.868
   RMS: 0.755
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 3.878
   RMS: 0.644
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.714
   RMS: 0.735
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.932
   RMS: 0.932
   RMS: 1.009
   RMS: 0.932
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 1.436
   RMS: 0.968
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.749
   RMS: 0.822
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.553
   RMS: 0.630
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 0.867
   RMS: 0.641
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.674
   RMS: 0.636
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.913
   RMS: 0.752
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.932
   RMS: 0.798
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.974
   RMS: 0.806
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.059
   RMS: 0.841
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 1.726
   RMS: 0.906
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.626
   RMS: 0.625
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.743
   RMS: 0.942
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 3.405
   RMS: 0.840
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 0.791
   RMS: 0.938
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 1.190
   RMS: 0.691
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.815
   RMS: 0.708
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.901
   RMS: 0.788
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 0.674
   RMS: 0.882
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 0.940
   RMS: 0.741
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.350
   RMS: 0.787
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 3.503
   RMS: 0.731
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.977
   RMS: 0.451
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.588
   RMS: 0.663
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.677
   RMS: 0.838
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.620
   RMS: 0.673
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.905
   RMS: 0.905
   RMS: 1.216
   RMS: 0.905
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.442
   RMS: 0.649
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.933
   RMS: 0.854
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.822
   RMS: 0.685
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.622
   RMS: 0.622
   RMS: 3.638
   RMS: 0.622
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.749
   RMS: 0.689
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.953
   RMS: 0.863
   Unrecognised keyword: pdb1nca_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.836
   RMS: 0.853
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 0.806
   RMS: 0.928
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.752
   RMS: 0.890
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.999
   RMS: 0.999
   RMS: 0.695
   RMS: 0.999
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.926
   RMS: 0.909
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.039
   RMS: 1.039
   RMS: 1.098
   RMS: 1.039
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 0.753
   RMS: 0.951
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.631
   RMS: 0.564
   Unrecognised keyword: pdb1nca_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 1.484
   RMS: 0.627
   Unrecognised keyword: pdb1nca_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.014
   RMS: 1.014
   RMS: 2.994
   RMS: 1.014
   Unrecognised keyword: pdb1nca_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 3.689
   RMS: 0.977
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1nfd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 2.737
   RMS: 0.824
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 3.063
   RMS: 0.794
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 2.629
   RMS: 0.759
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 3.168
   RMS: 0.804
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.010
   RMS: 1.010
   RMS: 3.053
   RMS: 1.010
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 3.115
   RMS: 0.793
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.394
   RMS: 0.394
   RMS: 3.035
   RMS: 0.394
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.248
   RMS: 0.248
   RMS: 3.197
   RMS: 0.248
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 3.486
   RMS: 0.464
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.509
   RMS: 0.734
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 3.086
   RMS: 0.716
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 2.785
   RMS: 0.753
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 3.055
   RMS: 0.866
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 2.914
   RMS: 0.785
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 2.807
   RMS: 0.676
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 2.955
   RMS: 0.638
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 1.560
   RMS: 0.774
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 2.732
   RMS: 0.684
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 3.210
   RMS: 0.856
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.023
   RMS: 1.023
   RMS: 3.288
   RMS: 1.023
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 3.034
   RMS: 0.553
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 2.965
   RMS: 0.691
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.732
   RMS: 0.732
   RMS: 2.841
   RMS: 0.732
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 3.131
   RMS: 0.571
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.557
   RMS: 0.557
   RMS: 3.111
   RMS: 0.557
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 2.897
   RMS: 0.678
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 3.386
   RMS: 0.782
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 3.193
   RMS: 0.833
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.852
   RMS: 0.852
   RMS: 3.889
   RMS: 0.852
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 2.884
   RMS: 0.729
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 3.238
   RMS: 0.500
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.540
   RMS: 0.540
   RMS: 0.784
   RMS: 0.540
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 2.954
   RMS: 0.515
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.114
   RMS: 0.726
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.067
   RMS: 0.524
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.695
   RMS: 0.695
   RMS: 3.221
   RMS: 0.695
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 2.892
   RMS: 0.798
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.588
   RMS: 0.588
   RMS: 2.917
   RMS: 0.588
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 2.675
   RMS: 0.844
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.814
   RMS: 0.826
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 2.755
   RMS: 0.797
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 2.957
   RMS: 0.658
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 1.316
   RMS: 0.700
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 3.034
   RMS: 0.531
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 3.309
   RMS: 0.808
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 3.116
   RMS: 0.584
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 3.101
   RMS: 0.697
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.468
   RMS: 0.728
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.301
   RMS: 0.662
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 2.770
   RMS: 0.715
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 3.210
   RMS: 0.537
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 3.126
   RMS: 0.722
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 3.161
   RMS: 0.863
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 3.038
   RMS: 0.907
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.447
   RMS: 0.447
   RMS: 2.996
   RMS: 0.447
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.941
   RMS: 0.941
   RMS: 3.265
   RMS: 0.941
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.263
   RMS: 0.787
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 2.936
   RMS: 0.887
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.044
   RMS: 0.754
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 2.608
   RMS: 0.731
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 1.180
   RMS: 0.504
   Unrecognised keyword: pdb1ncw_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 1.357
   RMS: 0.724
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1nl0_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.531
   RMS: 0.531
   RMS: 1.361
   RMS: 0.531
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.730
   RMS: 0.755
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.851
   RMS: 0.736
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 1.196
   RMS: 0.721
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 1.288
   RMS: 0.545
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.946
   RMS: 0.823
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.182
   RMS: 0.822
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 1.607
   RMS: 0.792
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 1.885
   RMS: 0.574
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 1.322
   RMS: 0.876
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.486
   RMS: 0.821
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 1.108
   RMS: 0.514
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.951
   RMS: 0.593
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.856
   RMS: 0.548
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.978
   RMS: 0.548
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 3.428
   RMS: 0.815
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.419
   RMS: 0.897
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 1.430
   RMS: 0.547
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.112
   RMS: 1.112
   RMS: 1.319
   RMS: 1.112
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.090
   RMS: 0.847
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.822
   RMS: 0.772
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.655
   RMS: 0.876
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.638
   RMS: 0.638
   RMS: 1.051
   RMS: 0.638
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 1.278
   RMS: 0.697
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.761
   RMS: 0.895
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.451
   RMS: 0.473
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 1.465
   RMS: 0.485
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 2.293
   RMS: 0.544
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.827
   RMS: 0.810
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.258
   RMS: 0.751
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 3.034
   RMS: 0.718
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.045
   RMS: 0.741
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 1.402
   RMS: 0.801
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.175
   RMS: 0.735
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 1.337
   RMS: 0.585
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.802
   RMS: 0.600
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 1.157
   RMS: 0.635
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 1.069
   RMS: 0.878
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 3.043
   RMS: 0.929
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.582
   RMS: 0.840
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.801
   RMS: 0.795
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.537
   RMS: 0.537
   RMS: 3.308
   RMS: 0.537
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.874
   RMS: 0.709
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 1.639
   RMS: 0.558
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.991
   RMS: 0.719
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.298
   RMS: 0.576
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 3.325
   RMS: 0.860
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 3.147
   RMS: 0.845
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.588
   RMS: 0.837
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.123
   RMS: 0.829
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.203
   RMS: 0.561
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 1.157
   RMS: 0.575
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.827
   RMS: 0.580
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.960
   RMS: 0.815
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 1.369
   RMS: 0.554
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.376
   RMS: 0.665
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 0.991
   RMS: 0.609
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.677
   RMS: 0.761
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.499
   RMS: 0.845
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 2.776
   RMS: 0.806
   Unrecognised keyword: pdb1nfd_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 3.200
   RMS: 0.781
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1oaq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 1.824
   RMS: 0.730
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 1.440
   RMS: 0.737
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.612
   RMS: 0.633
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.659
   RMS: 0.360
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 1.039
   RMS: 0.827
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 1.080
   RMS: 0.788
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.214
   RMS: 0.760
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.940
   RMS: 0.460
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.802
   RMS: 0.823
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 1.326
   RMS: 0.789
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.667
   RMS: 0.406
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.372
   RMS: 0.372
   RMS: 0.855
   RMS: 0.372
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.811
   RMS: 0.404
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.371
   RMS: 0.371
   RMS: 0.775
   RMS: 0.371
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.756
   RMS: 0.772
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 1.258
   RMS: 0.868
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.591
   RMS: 0.403
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.111
   RMS: 1.111
   RMS: 2.271
   RMS: 1.111
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.721
   RMS: 0.833
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.752
   RMS: 0.753
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.299
   RMS: 0.828
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.976
   RMS: 0.651
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.002
   RMS: 0.689
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 1.629
   RMS: 0.880
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 0.948
   RMS: 0.298
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.385
   RMS: 0.385
   RMS: 0.563
   RMS: 0.385
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.380
   RMS: 0.380
   RMS: 1.849
   RMS: 0.380
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.773
   RMS: 0.778
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.914
   RMS: 0.665
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 3.178
   RMS: 0.608
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.442
   RMS: 0.650
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 1.208
   RMS: 0.784
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.826
   RMS: 0.721
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.465
   RMS: 0.465
   RMS: 0.637
   RMS: 0.465
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.133
   RMS: 0.472
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.392
   RMS: 0.568
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.540
   RMS: 0.947
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 3.488
   RMS: 0.920
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 1.600
   RMS: 0.813
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.956
   RMS: 0.778
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 3.366
   RMS: 0.435
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 0.995
   RMS: 0.725
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.318
   RMS: 0.318
   RMS: 0.689
   RMS: 0.318
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.998
   RMS: 0.751
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.414
   RMS: 0.414
   RMS: 0.492
   RMS: 0.414
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.923
   RMS: 0.829
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 3.763
   RMS: 0.826
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.150
   RMS: 0.809
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.392
   RMS: 0.746
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.611
   RMS: 0.426
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 0.752
   RMS: 0.387
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 1.109
   RMS: 0.408
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.665
   RMS: 0.804
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.570
   RMS: 0.406
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.853
   RMS: 0.703
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.468
   RMS: 0.468
   RMS: 0.539
   RMS: 0.468
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.353
   RMS: 0.727
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.095
   RMS: 0.781
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 2.762
   RMS: 0.776
   Unrecognised keyword: pdb1nl0_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.704
   RMS: 0.724
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1ob1_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 1.085
   RMS: 0.534
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 1.603
   RMS: 1.022
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.746
   RMS: 0.744
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.313
   RMS: 0.819
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.511
   RMS: 0.829
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 1.969
   RMS: 0.802
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 2.292
   RMS: 0.634
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 1.816
   RMS: 0.375
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.266
   RMS: 0.266
   RMS: 0.670
   RMS: 0.266
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.477
   RMS: 0.773
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 1.304
   RMS: 0.786
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.184
   RMS: 0.620
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 1.409
   RMS: 0.611
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 3.306
   RMS: 0.392
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.905
   RMS: 0.541
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.864
   RMS: 0.794
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.967
   RMS: 0.967
   RMS: 1.365
   RMS: 0.967
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.559
   RMS: 0.666
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.352
   RMS: 0.352
   RMS: 1.262
   RMS: 0.352
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 0.973
   RMS: 0.435
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.522
   RMS: 0.522
   RMS: 1.418
   RMS: 0.522
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 1.764
   RMS: 0.593
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.991
   RMS: 0.619
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.927
   RMS: 0.698
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.925
   RMS: 0.740
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 2.736
   RMS: 0.801
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.317
   RMS: 0.317
   RMS: 1.215
   RMS: 0.317
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 1.694
   RMS: 0.806
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.048
   RMS: 0.705
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.482
   RMS: 0.778
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.717
   RMS: 0.472
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 1.544
   RMS: 0.565
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.798
   RMS: 0.711
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.003
   RMS: 0.757
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.529
   RMS: 0.576
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 1.214
   RMS: 0.681
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 2.942
   RMS: 0.552
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.407
   RMS: 0.504
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 1.117
   RMS: 0.333
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 3.355
   RMS: 0.688
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 1.240
   RMS: 0.565
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 2.127
   RMS: 0.783
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 1.349
   RMS: 0.529
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 1.738
   RMS: 0.657
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.330
   RMS: 0.330
   RMS: 3.015
   RMS: 0.330
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 2.813
   RMS: 0.402
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.975
   RMS: 0.481
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.399
   RMS: 0.748
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.697
   RMS: 0.678
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.674
   RMS: 0.769
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.175
   RMS: 0.765
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.403
   RMS: 0.828
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 1.910
   RMS: 0.797
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.850
   RMS: 0.889
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.425
   RMS: 0.790
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.265
   RMS: 0.265
   RMS: 1.057
   RMS: 0.265
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.480
   RMS: 0.480
   RMS: 1.729
   RMS: 0.480
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 2.667
   RMS: 0.881
   Unrecognised keyword: pdb1oaq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 2.935
   RMS: 0.842
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1op3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.013
   RMS: 1.013
   RMS: 1.062
   RMS: 1.013
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.310
   RMS: 0.770
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.924
   RMS: 0.786
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.064
   RMS: 0.819
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.374
   RMS: 0.790
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 1.599
   RMS: 0.736
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.197
   RMS: 0.620
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.578
   RMS: 0.578
   RMS: 0.629
   RMS: 0.578
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.981
   RMS: 0.758
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 0.915
   RMS: 0.799
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 0.960
   RMS: 0.674
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.662
   RMS: 0.662
   RMS: 1.124
   RMS: 0.662
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.916
   RMS: 0.620
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.753
   RMS: 0.724
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.289
   RMS: 0.826
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 1.258
   RMS: 0.961
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 1.049
   RMS: 0.768
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.821
   RMS: 0.601
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.910
   RMS: 0.614
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.571
   RMS: 0.571
   RMS: 0.863
   RMS: 0.571
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.104
   RMS: 0.671
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 0.842
   RMS: 0.755
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 1.200
   RMS: 0.701
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.353
   RMS: 0.758
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.860
   RMS: 0.822
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.854
   RMS: 0.593
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 0.958
   RMS: 0.790
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.506
   RMS: 0.703
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 1.106
   RMS: 0.822
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 1.335
   RMS: 0.634
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.004
   RMS: 0.648
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 1.182
   RMS: 0.727
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.733
   RMS: 0.785
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 1.225
   RMS: 0.678
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.436
   RMS: 0.741
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 3.529
   RMS: 0.726
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.861
   RMS: 0.565
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 0.785
   RMS: 0.631
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 3.790
   RMS: 0.714
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.804
   RMS: 0.606
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.509
   RMS: 0.805
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.679
   RMS: 0.601
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.741
   RMS: 0.741
   RMS: 1.252
   RMS: 0.741
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 3.788
   RMS: 0.633
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 3.599
   RMS: 0.625
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.821
   RMS: 0.698
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.997
   RMS: 0.747
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.128
   RMS: 0.740
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.057
   RMS: 0.812
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.881
   RMS: 0.815
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.980
   RMS: 0.885
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.231
   RMS: 0.808
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 1.385
   RMS: 0.927
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 1.043
   RMS: 0.828
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.647
   RMS: 0.551
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.734
   RMS: 0.654
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 3.107
   RMS: 0.855
   Unrecognised keyword: pdb1ob1_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 3.705
   RMS: 0.821
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1opg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.531
   RMS: 0.511
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 0.696
   RMS: 1.049
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 0.765
   RMS: 0.994
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 0.939
   RMS: 0.977
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.830
   RMS: 0.718
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 0.558
   RMS: 1.120
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.064
   RMS: 1.064
   RMS: 0.997
   RMS: 1.064
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.437
   RMS: 0.494
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.574
   RMS: 0.555
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.691
   RMS: 0.670
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 0.619
   RMS: 0.716
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 3.859
   RMS: 1.063
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.184
   RMS: 1.184
   RMS: 0.949
   RMS: 1.184
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 0.411
   RMS: 0.526
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.304
   RMS: 1.304
   RMS: 1.850
   RMS: 1.304
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.113
   RMS: 1.113
   RMS: 0.377
   RMS: 1.113
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.070
   RMS: 1.070
   RMS: 0.442
   RMS: 1.070
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.171
   RMS: 1.171
   RMS: 0.992
   RMS: 1.171
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 0.539
   RMS: 0.935
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 0.665
   RMS: 0.924
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.158
   RMS: 1.158
   RMS: 1.284
   RMS: 1.158
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.564
   RMS: 0.564
   RMS: 0.605
   RMS: 0.564
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.536
   RMS: 0.536
   RMS: 0.401
   RMS: 0.536
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 1.550
   RMS: 0.579
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.092
   RMS: 1.092
   RMS: 0.440
   RMS: 1.092
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.416
   RMS: 0.786
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.961
   RMS: 0.961
   RMS: 3.294
   RMS: 0.961
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 0.392
   RMS: 0.861
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.047
   RMS: 1.047
   RMS: 0.889
   RMS: 1.047
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 0.314
   RMS: 0.983
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.476
   RMS: 0.764
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.719
   RMS: 0.672
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.443
   RMS: 0.863
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.079
   RMS: 1.079
   RMS: 1.541
   RMS: 1.079
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.156
   RMS: 1.156
   RMS: 3.510
   RMS: 1.156
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.152
   RMS: 1.152
   RMS: 1.357
   RMS: 1.152
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 0.632
   RMS: 1.086
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.523
   RMS: 0.703
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.987
   RMS: 0.987
   RMS: 0.614
   RMS: 0.987
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.495
   RMS: 0.495
   RMS: 0.583
   RMS: 0.495
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 0.541
   RMS: 0.991
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.446
   RMS: 0.623
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.120
   RMS: 1.120
   RMS: 3.923
   RMS: 1.120
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.136
   RMS: 1.136
   RMS: 3.737
   RMS: 1.136
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.109
   RMS: 1.109
   RMS: 0.815
   RMS: 1.109
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.005
   RMS: 0.919
   Unrecognised keyword: pdb1op3_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.342
   RMS: 0.656
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.432
   RMS: 0.553
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.870
   RMS: 0.546
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.998
   RMS: 0.998
   RMS: 0.435
   RMS: 0.998
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.501
   RMS: 0.504
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.860
   RMS: 0.862
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.351
   RMS: 0.614
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.022
   RMS: 1.022
   RMS: 0.999
   RMS: 1.022
   Unrecognised keyword: pdb1op3_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.138
   RMS: 1.138
   RMS: 1.230
   RMS: 1.138
   Unrecognised keyword: pdb1op3_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 2.836
   RMS: 0.953
   Unrecognised keyword: pdb1op3_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 3.756
   RMS: 0.829
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1orq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 0.601
   RMS: 0.841
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 0.546
   RMS: 0.808
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.656
   RMS: 0.817
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.828
   RMS: 0.482
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.749
   RMS: 0.863
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 1.205
   RMS: 0.805
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.336
   RMS: 0.336
   RMS: 0.659
   RMS: 0.336
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 0.986
   RMS: 0.407
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 0.972
   RMS: 0.444
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.364
   RMS: 0.441
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 4.023
   RMS: 0.817
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.097
   RMS: 0.917
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.230
   RMS: 0.230
   RMS: 0.370
   RMS: 0.230
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.133
   RMS: 1.133
   RMS: 1.822
   RMS: 1.133
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.425
   RMS: 0.853
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.572
   RMS: 0.786
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.958
   RMS: 0.901
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 0.552
   RMS: 0.635
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.050
   RMS: 0.660
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 1.582
   RMS: 0.916
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 0.576
   RMS: 0.298
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.273
   RMS: 0.273
   RMS: 0.420
   RMS: 0.273
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 1.616
   RMS: 0.312
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.797
   RMS: 0.797
   RMS: 0.694
   RMS: 0.797
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.614
   RMS: 0.657
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.322
   RMS: 0.706
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 0.448
   RMS: 0.710
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.816
   RMS: 0.816
   RMS: 0.670
   RMS: 0.816
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 0.623
   RMS: 0.720
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 0.495
   RMS: 0.504
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.445
   RMS: 0.445
   RMS: 0.903
   RMS: 0.445
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.620
   RMS: 0.565
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.960
   RMS: 0.960
   RMS: 1.818
   RMS: 0.960
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 3.572
   RMS: 0.946
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.557
   RMS: 0.887
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 0.763
   RMS: 0.803
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 3.611
   RMS: 0.485
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.621
   RMS: 0.729
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.293
   RMS: 0.293
   RMS: 0.582
   RMS: 0.293
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.778
   RMS: 0.723
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.338
   RMS: 0.405
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 4.037
   RMS: 0.863
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 3.813
   RMS: 0.837
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.939
   RMS: 0.837
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.894
   RMS: 0.724
   Unrecognised keyword: pdb1opg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 0.314
   RMS: 0.437
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.289
   RMS: 0.289
   RMS: 0.390
   RMS: 0.289
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.901
   RMS: 0.296
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.368
   RMS: 0.840
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 0.579
   RMS: 0.381
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 0.394
   RMS: 0.722
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.496
   RMS: 0.428
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.092
   RMS: 0.744
   Unrecognised keyword: pdb1opg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.392
   RMS: 0.826
   Unrecognised keyword: pdb1opg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 2.823
   RMS: 0.810
   Unrecognised keyword: pdb1opg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.851
   RMS: 0.753
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1ors_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.325
   RMS: 0.325
   RMS: 0.340
   RMS: 0.325
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.451
   RMS: 0.451
   RMS: 0.757
   RMS: 0.451
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.209
   RMS: 0.757
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.948
   RMS: 0.782
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 0.775
   RMS: 0.817
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.650
   RMS: 0.889
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.883
   RMS: 0.822
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.916
   RMS: 0.726
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.412
   RMS: 0.704
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.948
   RMS: 0.812
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.729
   RMS: 0.718
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 0.789
   RMS: 0.889
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.057
   RMS: 1.057
   RMS: 1.265
   RMS: 1.057
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 0.524
   RMS: 0.665
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.425
   RMS: 0.747
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.528
   RMS: 0.769
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.333
   RMS: 0.636
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 1.033
   RMS: 0.676
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 1.167
   RMS: 0.771
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.753
   RMS: 0.813
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 0.850
   RMS: 0.856
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 1.718
   RMS: 0.889
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.556
   RMS: 0.800
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 0.622
   RMS: 0.579
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 3.333
   RMS: 0.549
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.631
   RMS: 0.553
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.654
   RMS: 0.763
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 0.583
   RMS: 0.603
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.796
   RMS: 0.762
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.503
   RMS: 0.869
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.805
   RMS: 0.670
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.643
   RMS: 0.884
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 3.456
   RMS: 0.892
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 1.122
   RMS: 0.853
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.435
   RMS: 0.751
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 3.657
   RMS: 0.715
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 0.259
   RMS: 0.637
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 0.994
   RMS: 0.848
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 0.584
   RMS: 0.664
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 0.730
   RMS: 0.758
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 3.836
   RMS: 0.807
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 3.600
   RMS: 0.746
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.517
   RMS: 0.773
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 0.540
   RMS: 0.611
   Unrecognised keyword: pdb1orq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.581
   RMS: 0.775
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 0.529
   RMS: 0.920
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 0.601
   RMS: 0.946
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.410
   RMS: 0.523
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.894
   RMS: 0.972
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.736
   RMS: 0.777
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.574
   RMS: 0.909
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.639
   RMS: 0.827
   Unrecognised keyword: pdb1orq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 1.553
   RMS: 0.781
   Unrecognised keyword: pdb1orq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 2.839
   RMS: 0.539
   Unrecognised keyword: pdb1orq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 3.704
   RMS: 0.699
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1osp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.374
   RMS: 0.374
   RMS: 0.534
   RMS: 0.374
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 1.110
   RMS: 0.759
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 1.061
   RMS: 0.787
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.003
   RMS: 0.826
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.771
   RMS: 0.859
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.055
   RMS: 0.770
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.682
   RMS: 0.682
   RMS: 1.066
   RMS: 0.682
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.461
   RMS: 0.649
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 4.162
   RMS: 0.831
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.987
   RMS: 0.761
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.753
   RMS: 0.860
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.042
   RMS: 1.042
   RMS: 1.367
   RMS: 1.042
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 0.610
   RMS: 0.610
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.576
   RMS: 0.745
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.697
   RMS: 0.787
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.617
   RMS: 0.617
   RMS: 0.313
   RMS: 0.617
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.603
   RMS: 0.603
   RMS: 1.201
   RMS: 0.603
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 1.408
   RMS: 0.753
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.647
   RMS: 0.781
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.840
   RMS: 0.837
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.730
   RMS: 0.858
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.721
   RMS: 0.793
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.488
   RMS: 0.488
   RMS: 0.662
   RMS: 0.488
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 3.491
   RMS: 0.510
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.731
   RMS: 0.464
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.647
   RMS: 0.788
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.580
   RMS: 0.580
   RMS: 0.696
   RMS: 0.580
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 0.790
   RMS: 0.708
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.677
   RMS: 0.837
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.896
   RMS: 0.627
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.859
   RMS: 0.892
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 3.618
   RMS: 0.908
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.336
   RMS: 0.857
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.575
   RMS: 0.734
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 3.843
   RMS: 0.698
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.355
   RMS: 0.602
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 0.985
   RMS: 0.804
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 0.632
   RMS: 0.658
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.754
   RMS: 0.699
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 4.009
   RMS: 0.798
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.756
   RMS: 0.743
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.787
   RMS: 0.768
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.448
   RMS: 0.553
   Unrecognised keyword: pdb1ors_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 0.623
   RMS: 0.745
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 0.563
   RMS: 0.885
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.922
   RMS: 0.922
   RMS: 0.647
   RMS: 0.922
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.500
   RMS: 0.432
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.917
   RMS: 0.943
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.761
   RMS: 0.761
   RMS: 0.612
   RMS: 0.761
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.703
   RMS: 0.894
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.767
   RMS: 0.829
   Unrecognised keyword: pdb1ors_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.698
   RMS: 0.794
   Unrecognised keyword: pdb1ors_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 2.964
   RMS: 0.432
   Unrecognised keyword: pdb1ors_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.899
   RMS: 0.679
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1ots_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 0.993
   RMS: 0.751
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.098
   RMS: 0.793
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.424
   RMS: 0.804
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.031
   RMS: 0.845
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.383
   RMS: 0.782
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 1.455
   RMS: 0.663
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.820
   RMS: 0.645
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 4.509
   RMS: 0.820
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.378
   RMS: 0.782
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 0.747
   RMS: 0.860
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.049
   RMS: 1.049
   RMS: 1.660
   RMS: 1.049
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.858
   RMS: 0.709
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.931
   RMS: 0.739
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.116
   RMS: 0.769
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.655
   RMS: 0.700
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.350
   RMS: 0.722
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 1.814
   RMS: 0.807
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.541
   RMS: 0.771
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.843
   RMS: 0.845
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.476
   RMS: 0.854
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.817
   RMS: 0.817
   RMS: 1.084
   RMS: 0.817
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.725
   RMS: 0.549
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 3.762
   RMS: 0.484
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 1.008
   RMS: 0.429
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.587
   RMS: 0.809
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.857
   RMS: 0.686
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.787
   RMS: 0.728
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.104
   RMS: 0.854
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.161
   RMS: 0.725
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 2.286
   RMS: 0.920
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.953
   RMS: 0.916
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.883
   RMS: 0.883
   RMS: 1.789
   RMS: 0.883
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.751
   RMS: 0.751
   RMS: 1.030
   RMS: 0.751
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 4.113
   RMS: 0.650
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.684
   RMS: 0.684
   RMS: 0.806
   RMS: 0.684
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.906
   RMS: 0.806
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.973
   RMS: 0.759
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.862
   RMS: 0.706
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 4.401
   RMS: 0.798
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 4.140
   RMS: 0.778
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.185
   RMS: 0.819
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.747
   RMS: 0.633
   Unrecognised keyword: pdb1osp_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 0.740
   RMS: 0.753
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.656
   RMS: 0.862
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.094
   RMS: 0.925
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.489
   RMS: 0.489
   RMS: 0.815
   RMS: 0.489
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.906
   RMS: 0.906
   RMS: 0.922
   RMS: 0.906
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.644
   RMS: 0.752
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.016
   RMS: 0.863
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.191
   RMS: 0.826
   Unrecognised keyword: pdb1osp_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.804
   RMS: 0.804
   RMS: 1.986
   RMS: 0.804
   Unrecognised keyword: pdb1osp_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 3.193
   RMS: 0.492
   Unrecognised keyword: pdb1osp_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 4.291
   RMS: 0.601
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1plg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.886
   RMS: 0.683
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.725
   RMS: 0.674
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 0.940
   RMS: 0.541
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 1.285
   RMS: 0.473
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 1.314
   RMS: 0.472
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.116
   RMS: 0.474
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 4.364
   RMS: 0.626
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 1.643
   RMS: 0.707
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.518
   RMS: 0.518
   RMS: 0.592
   RMS: 0.518
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.119
   RMS: 1.119
   RMS: 2.327
   RMS: 1.119
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.867
   RMS: 0.787
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 1.113
   RMS: 0.660
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 1.632
   RMS: 0.722
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 1.058
   RMS: 0.584
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.127
   RMS: 0.671
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 1.943
   RMS: 0.836
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.755
   RMS: 0.459
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.554
   RMS: 0.458
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 1.259
   RMS: 0.509
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 1.182
   RMS: 0.667
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.656
   RMS: 0.656
   RMS: 0.830
   RMS: 0.656
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 3.658
   RMS: 0.624
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.949
   RMS: 0.651
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 1.232
   RMS: 0.626
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 1.003
   RMS: 0.618
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.723
   RMS: 0.624
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.422
   RMS: 0.605
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.505
   RMS: 0.505
   RMS: 1.025
   RMS: 0.505
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 2.143
   RMS: 0.801
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 3.980
   RMS: 0.800
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 2.076
   RMS: 0.779
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.665
   RMS: 0.665
   RMS: 1.267
   RMS: 0.665
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 3.900
   RMS: 0.386
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 1.199
   RMS: 0.669
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 0.476
   RMS: 0.461
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 1.054
   RMS: 0.626
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.707
   RMS: 0.401
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 4.470
   RMS: 0.742
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 4.273
   RMS: 0.728
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.708
   RMS: 0.708
   RMS: 1.536
   RMS: 0.708
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.460
   RMS: 0.720
   Unrecognised keyword: pdb1ots_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 0.769
   RMS: 0.514
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.869
   RMS: 0.548
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 1.456
   RMS: 0.528
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.008
   RMS: 0.744
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.665
   RMS: 0.602
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.680
   RMS: 0.680
   RMS: 0.935
   RMS: 0.680
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.994
   RMS: 0.573
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.634
   RMS: 0.634
   RMS: 1.581
   RMS: 0.634
   Unrecognised keyword: pdb1ots_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 1.591
   RMS: 0.693
   Unrecognised keyword: pdb1ots_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 3.121
   RMS: 0.783
   Unrecognised keyword: pdb1ots_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 4.279
   RMS: 0.692
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1q0x_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 1.231
   RMS: 0.346
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.766
   RMS: 0.903
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 0.915
   RMS: 0.859
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.982
   RMS: 0.705
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.871
   RMS: 0.691
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 3.868
   RMS: 0.382
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.427
   RMS: 0.427
   RMS: 1.045
   RMS: 0.427
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 0.566
   RMS: 0.928
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.967
   RMS: 0.964
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.595
   RMS: 0.673
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.404
   RMS: 0.404
   RMS: 0.748
   RMS: 0.404
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.388
   RMS: 0.388
   RMS: 1.201
   RMS: 0.388
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.865
   RMS: 0.572
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 0.647
   RMS: 0.618
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 1.470
   RMS: 0.636
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.781
   RMS: 0.819
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.524
   RMS: 0.866
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.219
   RMS: 0.917
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 0.789
   RMS: 0.362
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.586
   RMS: 0.794
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 3.268
   RMS: 0.698
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.684
   RMS: 0.774
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.471
   RMS: 0.471
   RMS: 0.966
   RMS: 0.471
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.573
   RMS: 0.573
   RMS: 0.684
   RMS: 0.573
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.588
   RMS: 0.812
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.064
   RMS: 0.869
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.801
   RMS: 0.650
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 1.698
   RMS: 0.674
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 3.550
   RMS: 0.512
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 1.606
   RMS: 0.562
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.348
   RMS: 0.348
   RMS: 1.022
   RMS: 0.348
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 3.467
   RMS: 0.775
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 0.945
   RMS: 0.605
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 0.610
   RMS: 0.876
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 0.878
   RMS: 0.553
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.562
   RMS: 0.733
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.362
   RMS: 0.362
   RMS: 4.058
   RMS: 0.362
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 3.881
   RMS: 0.378
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.017
   RMS: 0.497
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 1.271
   RMS: 0.746
   Unrecognised keyword: pdb1plg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.526
   RMS: 0.768
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.909
   RMS: 0.909
   RMS: 0.575
   RMS: 0.909
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.235
   RMS: 0.908
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.717
   RMS: 0.795
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.477
   RMS: 0.942
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 0.946
   RMS: 0.917
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 0.693
   RMS: 0.890
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 1.225
   RMS: 0.332
   Unrecognised keyword: pdb1plg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 1.239
   RMS: 0.453
   Unrecognised keyword: pdb1plg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 2.868
   RMS: 0.868
   Unrecognised keyword: pdb1plg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 3.860
   RMS: 0.888
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1q1j_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 0.943
   RMS: 0.835
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.752
   RMS: 0.839
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.753
   RMS: 0.661
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.917
   RMS: 0.660
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 3.533
   RMS: 0.434
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 0.403
   RMS: 0.493
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.292
   RMS: 0.860
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.958
   RMS: 0.958
   RMS: 1.228
   RMS: 0.958
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.970
   RMS: 0.623
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.675
   RMS: 0.332
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 0.544
   RMS: 0.409
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.825
   RMS: 0.513
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 1.140
   RMS: 0.592
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.676
   RMS: 0.596
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 1.302
   RMS: 0.762
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.338
   RMS: 0.803
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 2.156
   RMS: 0.868
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.625
   RMS: 0.309
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 1.048
   RMS: 0.778
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 3.150
   RMS: 0.711
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 0.950
   RMS: 0.780
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 1.216
   RMS: 0.461
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.907
   RMS: 0.535
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 1.243
   RMS: 0.775
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 0.434
   RMS: 0.812
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.023
   RMS: 0.596
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 1.160
   RMS: 0.679
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 3.150
   RMS: 0.551
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.417
   RMS: 0.562
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.575
   RMS: 0.344
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.424
   RMS: 0.738
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.675
   RMS: 0.532
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 1.531
   RMS: 0.848
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.769
   RMS: 0.482
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.199
   RMS: 0.698
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.287
   RMS: 0.287
   RMS: 3.396
   RMS: 0.287
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.351
   RMS: 0.351
   RMS: 3.202
   RMS: 0.351
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.397
   RMS: 0.496
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.701
   RMS: 0.701
   RMS: 0.925
   RMS: 0.701
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 1.098
   RMS: 0.723
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.059
   RMS: 0.841
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.686
   RMS: 0.839
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.841
   RMS: 0.788
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 1.315
   RMS: 0.877
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.357
   RMS: 0.908
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.877
   RMS: 0.845
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.281
   RMS: 0.281
   RMS: 0.547
   RMS: 0.281
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 1.483
   RMS: 0.483
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 2.769
   RMS: 0.882
   Unrecognised keyword: pdb1q0x_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 3.305
   RMS: 0.854
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1q72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.576
   RMS: 0.421
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.632
   RMS: 0.472
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.650
   RMS: 0.452
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 3.826
   RMS: 0.866
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 0.964
   RMS: 0.974
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.592
   RMS: 0.369
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.131
   RMS: 1.131
   RMS: 1.823
   RMS: 1.131
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.540
   RMS: 0.879
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.815
   RMS: 0.815
   RMS: 0.451
   RMS: 0.815
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.921
   RMS: 0.921
   RMS: 1.013
   RMS: 0.921
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 0.638
   RMS: 0.666
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 0.832
   RMS: 0.704
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.220
   RMS: 0.915
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.338
   RMS: 0.338
   RMS: 0.807
   RMS: 0.338
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.637
   RMS: 0.332
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 1.672
   RMS: 0.361
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.507
   RMS: 0.831
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.625
   RMS: 0.683
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 3.291
   RMS: 0.736
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 0.409
   RMS: 0.730
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 1.008
   RMS: 0.859
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.548
   RMS: 0.747
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.525
   RMS: 0.511
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 0.703
   RMS: 0.477
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.627
   RMS: 0.627
   RMS: 0.497
   RMS: 0.627
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 1.429
   RMS: 0.988
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 3.507
   RMS: 0.994
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.888
   RMS: 0.888
   RMS: 1.232
   RMS: 0.888
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.548
   RMS: 0.847
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 3.537
   RMS: 0.503
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.639
   RMS: 0.762
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.762
   RMS: 0.344
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.576
   RMS: 0.768
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 0.517
   RMS: 0.418
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 3.847
   RMS: 0.892
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.896
   RMS: 0.896
   RMS: 3.663
   RMS: 0.896
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.829
   RMS: 0.870
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.077
   RMS: 0.749
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.507
   RMS: 0.453
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.593
   RMS: 0.401
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.386
   RMS: 0.386
   RMS: 0.842
   RMS: 0.386
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.495
   RMS: 0.866
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.625
   RMS: 0.360
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.893
   RMS: 0.750
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.350
   RMS: 0.485
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.995
   RMS: 0.778
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.250
   RMS: 0.885
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 2.760
   RMS: 0.837
   Unrecognised keyword: pdb1q1j_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.653
   RMS: 0.743
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1q9r_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 0.403
   RMS: 0.467
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.482
   RMS: 0.482
   RMS: 0.881
   RMS: 0.482
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.560
   RMS: 0.828
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 0.805
   RMS: 0.894
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.957
   RMS: 0.426
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.131
   RMS: 1.131
   RMS: 1.816
   RMS: 1.131
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 0.707
   RMS: 0.851
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.560
   RMS: 0.813
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 1.002
   RMS: 0.884
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.809
   RMS: 0.712
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 0.662
   RMS: 0.709
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 0.860
   RMS: 0.897
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 1.033
   RMS: 0.365
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.369
   RMS: 0.369
   RMS: 0.932
   RMS: 0.369
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.416
   RMS: 0.416
   RMS: 1.939
   RMS: 0.416
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.415
   RMS: 0.832
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.805
   RMS: 0.661
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 3.173
   RMS: 0.699
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.631
   RMS: 0.669
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 1.299
   RMS: 0.832
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 0.629
   RMS: 0.731
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 0.921
   RMS: 0.498
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.450
   RMS: 0.450
   RMS: 0.651
   RMS: 0.450
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 0.592
   RMS: 0.615
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.969
   RMS: 0.969
   RMS: 1.054
   RMS: 0.969
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 3.298
   RMS: 0.965
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.871
   RMS: 0.871
   RMS: 0.991
   RMS: 0.871
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.570
   RMS: 0.839
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.526
   RMS: 0.526
   RMS: 3.354
   RMS: 0.526
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.761
   RMS: 0.774
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.331
   RMS: 0.331
   RMS: 1.068
   RMS: 0.331
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 0.615
   RMS: 0.754
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.466
   RMS: 0.466
   RMS: 0.900
   RMS: 0.466
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 3.618
   RMS: 0.858
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.877
   RMS: 0.877
   RMS: 3.473
   RMS: 0.877
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.716
   RMS: 0.822
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.184
   RMS: 0.758
   Unrecognised keyword: pdb1q72_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.790
   RMS: 0.432
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 0.837
   RMS: 0.443
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.787
   RMS: 0.428
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.717
   RMS: 0.807
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.485
   RMS: 0.485
   RMS: 0.898
   RMS: 0.485
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 1.251
   RMS: 0.794
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 0.536
   RMS: 0.528
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.880
   RMS: 0.781
   Unrecognised keyword: pdb1q72_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.860
   RMS: 0.860
   RMS: 1.183
   RMS: 0.860
   Unrecognised keyword: pdb1q72_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 2.820
   RMS: 0.774
   Unrecognised keyword: pdb1q72_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.476
   RMS: 0.738
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1q9o_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.307
   RMS: 0.307
   RMS: 0.803
   RMS: 0.307
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.674
   RMS: 0.674
   RMS: 3.445
   RMS: 0.674
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.767
   RMS: 0.767
   RMS: 0.770
   RMS: 0.767
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 0.984
   RMS: 0.474
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 1.840
   RMS: 1.034
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 0.725
   RMS: 0.726
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.569
   RMS: 0.644
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.966
   RMS: 0.717
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.877
   RMS: 0.501
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.901
   RMS: 0.561
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.956
   RMS: 0.762
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.375
   RMS: 0.375
   RMS: 1.165
   RMS: 0.375
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.978
   RMS: 0.439
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 2.057
   RMS: 0.523
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.456
   RMS: 0.643
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 0.967
   RMS: 0.552
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 3.029
   RMS: 0.608
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.574
   RMS: 0.574
   RMS: 0.572
   RMS: 0.574
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 1.358
   RMS: 0.743
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.558
   RMS: 0.558
   RMS: 0.845
   RMS: 0.558
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.961
   RMS: 0.515
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 0.728
   RMS: 0.548
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.562
   RMS: 0.479
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.900
   RMS: 0.843
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.859
   RMS: 0.859
   RMS: 3.172
   RMS: 0.859
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.958
   RMS: 0.748
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.581
   RMS: 0.643
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 3.232
   RMS: 0.458
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.784
   RMS: 0.600
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.443
   RMS: 0.443
   RMS: 1.152
   RMS: 0.443
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.606
   RMS: 0.606
   RMS: 0.661
   RMS: 0.606
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.353
   RMS: 0.353
   RMS: 0.860
   RMS: 0.353
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.489
   RMS: 0.681
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 3.338
   RMS: 0.683
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.719
   RMS: 0.719
   RMS: 0.764
   RMS: 0.719
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.236
   RMS: 0.596
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 0.852
   RMS: 0.491
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.926
   RMS: 0.481
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 0.811
   RMS: 0.517
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.693
   RMS: 0.686
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.961
   RMS: 0.496
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 1.186
   RMS: 0.696
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 0.521
   RMS: 0.567
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 0.895
   RMS: 0.642
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.942
   RMS: 0.718
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 2.669
   RMS: 0.658
   Unrecognised keyword: pdb1q9r_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.320
   RMS: 0.679
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1wej_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.685
   RMS: 0.685
   RMS: 3.845
   RMS: 0.685
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 0.817
   RMS: 0.738
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.645
   RMS: 0.490
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 1.583
   RMS: 1.008
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 0.436
   RMS: 0.643
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.386
   RMS: 0.625
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 0.637
   RMS: 0.683
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.519
   RMS: 0.519
   RMS: 0.465
   RMS: 0.519
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 1.085
   RMS: 0.542
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 1.342
   RMS: 0.714
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.393
   RMS: 0.393
   RMS: 0.770
   RMS: 0.393
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.456
   RMS: 0.456
   RMS: 0.701
   RMS: 0.456
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.461
   RMS: 0.461
   RMS: 1.823
   RMS: 0.461
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.519
   RMS: 0.646
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.718
   RMS: 0.568
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.196
   RMS: 0.535
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.416
   RMS: 0.565
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.694
   RMS: 0.694
   RMS: 0.717
   RMS: 0.694
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.662
   RMS: 0.575
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.434
   RMS: 0.434
   RMS: 0.684
   RMS: 0.434
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.674
   RMS: 0.515
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.473
   RMS: 0.473
   RMS: 0.612
   RMS: 0.473
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 1.588
   RMS: 0.862
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 3.377
   RMS: 0.802
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 1.247
   RMS: 0.717
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.523
   RMS: 0.623
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.407
   RMS: 0.407
   RMS: 3.503
   RMS: 0.407
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.404
   RMS: 0.562
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 0.887
   RMS: 0.431
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.677
   RMS: 0.597
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.345
   RMS: 0.345
   RMS: 0.532
   RMS: 0.345
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.796
   RMS: 0.678
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.569
   RMS: 0.671
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.659
   RMS: 0.670
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 0.738
   RMS: 0.633
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.459
   RMS: 0.459
   RMS: 0.477
   RMS: 0.459
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.479
   RMS: 0.479
   RMS: 0.498
   RMS: 0.479
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.513
   RMS: 0.513
   RMS: 0.660
   RMS: 0.513
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.670
   RMS: 0.670
   RMS: 0.238
   RMS: 0.670
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.508
   RMS: 0.508
   RMS: 0.777
   RMS: 0.508
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.661
   RMS: 0.661
   RMS: 0.530
   RMS: 0.661
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.421
   RMS: 0.535
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.822
   RMS: 0.623
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 1.330
   RMS: 0.671
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.653
   RMS: 0.653
   RMS: 2.728
   RMS: 0.653
   Unrecognised keyword: pdb1q9o_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.693
   RMS: 0.693
   RMS: 3.630
   RMS: 0.693
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1qfu_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.504
   RMS: 0.504
   RMS: 3.502
   RMS: 0.504
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 4.074
   RMS: 0.881
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.079
   RMS: 1.079
   RMS: 4.276
   RMS: 1.079
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.753
   RMS: 0.753
   RMS: 3.872
   RMS: 0.753
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 3.770
   RMS: 0.424
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 3.740
   RMS: 0.413
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 4.038
   RMS: 0.591
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 3.787
   RMS: 0.620
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 3.504
   RMS: 0.676
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 4.298
   RMS: 0.776
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 4.033
   RMS: 0.802
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 4.797
   RMS: 0.875
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 3.648
   RMS: 0.419
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.851
   RMS: 0.851
   RMS: 4.107
   RMS: 0.851
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.402
   RMS: 0.710
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.792
   RMS: 0.792
   RMS: 3.728
   RMS: 0.792
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 4.143
   RMS: 0.424
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 3.900
   RMS: 0.599
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 4.066
   RMS: 0.784
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 3.731
   RMS: 0.865
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.615
   RMS: 0.615
   RMS: 3.636
   RMS: 0.615
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 2.944
   RMS: 0.619
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.353
   RMS: 0.474
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 3.394
   RMS: 0.614
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 3.766
   RMS: 0.403
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.692
   RMS: 0.692
   RMS: 1.064
   RMS: 0.692
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 3.920
   RMS: 0.667
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 4.147
   RMS: 0.818
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 3.937
   RMS: 0.621
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 3.937
   RMS: 0.698
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.477
   RMS: 0.477
   RMS: 1.420
   RMS: 0.477
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 1.713
   RMS: 0.484
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.525
   RMS: 0.525
   RMS: 3.589
   RMS: 0.525
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 4.205
   RMS: 0.822
   Unrecognised keyword: pdb1wej_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.975
   RMS: 0.756
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 4.039
   RMS: 0.847
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 3.856
   RMS: 0.846
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.841
   RMS: 0.831
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 4.055
   RMS: 0.880
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 4.194
   RMS: 0.884
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 3.714
   RMS: 0.832
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.391
   RMS: 0.391
   RMS: 3.865
   RMS: 0.391
   Unrecognised keyword: pdb1wej_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.457
   RMS: 0.457
   RMS: 3.103
   RMS: 0.457
   Unrecognised keyword: pdb1wej_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 2.242
   RMS: 0.912
   Unrecognised keyword: pdb1wej_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 1.141
   RMS: 0.879
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1qkz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.208
   RMS: 0.984
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.230
   RMS: 0.976
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.827
   RMS: 0.659
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 0.638
   RMS: 0.511
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.392
   RMS: 0.392
   RMS: 0.498
   RMS: 0.392
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.613
   RMS: 0.613
   RMS: 0.808
   RMS: 0.613
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.002
   RMS: 0.650
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.675
   RMS: 0.675
   RMS: 0.728
   RMS: 0.675
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.212
   RMS: 0.887
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 1.226
   RMS: 0.919
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.968
   RMS: 0.968
   RMS: 1.992
   RMS: 0.968
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.617
   RMS: 0.496
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.965
   RMS: 0.814
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 3.046
   RMS: 0.705
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.879
   RMS: 0.773
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 1.137
   RMS: 0.497
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.892
   RMS: 0.584
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.175
   RMS: 0.845
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.604
   RMS: 0.929
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 1.002
   RMS: 0.648
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 1.196
   RMS: 0.733
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 3.090
   RMS: 0.569
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.731
   RMS: 0.650
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.663
   RMS: 0.455
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 3.310
   RMS: 0.766
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.665
   RMS: 0.629
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 1.403
   RMS: 0.930
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.554
   RMS: 0.554
   RMS: 0.770
   RMS: 0.554
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.095
   RMS: 0.803
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 3.449
   RMS: 0.467
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 3.256
   RMS: 0.399
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.340
   RMS: 0.515
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 0.930
   RMS: 0.776
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.979
   RMS: 0.831
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 0.934
   RMS: 0.972
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.963
   RMS: 0.963
   RMS: 0.774
   RMS: 0.963
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 0.753
   RMS: 0.733
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.034
   RMS: 1.034
   RMS: 1.187
   RMS: 1.034
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.925
   RMS: 0.925
   RMS: 1.221
   RMS: 0.925
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.957
   RMS: 0.957
   RMS: 0.822
   RMS: 0.957
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.486
   RMS: 0.486
   RMS: 0.550
   RMS: 0.486
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 1.388
   RMS: 0.510
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 2.747
   RMS: 0.890
   Unrecognised keyword: pdb1qfu_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 3.327
   RMS: 0.901
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1qnz_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.187
   RMS: 1.187
   RMS: 1.999
   RMS: 1.187
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.508
   RMS: 0.901
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 0.664
   RMS: 0.834
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.964
   RMS: 0.964
   RMS: 1.167
   RMS: 0.964
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 0.666
   RMS: 0.681
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.939
   RMS: 0.705
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.644
   RMS: 0.972
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.265
   RMS: 0.265
   RMS: 0.556
   RMS: 0.265
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.283
   RMS: 0.283
   RMS: 0.185
   RMS: 0.283
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 1.401
   RMS: 0.298
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.754
   RMS: 0.845
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 0.524
   RMS: 0.712
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.407
   RMS: 0.754
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.505
   RMS: 0.762
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.880
   RMS: 0.880
   RMS: 0.790
   RMS: 0.880
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.591
   RMS: 0.779
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.527
   RMS: 0.527
   RMS: 0.304
   RMS: 0.527
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.426
   RMS: 0.426
   RMS: 0.999
   RMS: 0.426
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 0.619
   RMS: 0.600
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.009
   RMS: 1.009
   RMS: 1.850
   RMS: 1.009
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.029
   RMS: 1.029
   RMS: 3.696
   RMS: 1.029
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 1.657
   RMS: 0.943
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 0.886
   RMS: 0.870
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 3.661
   RMS: 0.535
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.777
   RMS: 0.777
   RMS: 0.784
   RMS: 0.777
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.328
   RMS: 0.328
   RMS: 0.375
   RMS: 0.328
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.787
   RMS: 0.770
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 0.231
   RMS: 0.470
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 4.153
   RMS: 0.900
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 3.946
   RMS: 0.907
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 1.081
   RMS: 0.892
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.084
   RMS: 0.779
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.452
   RMS: 0.452
   RMS: 0.323
   RMS: 0.452
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.296
   RMS: 0.296
   RMS: 0.442
   RMS: 0.296
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.291
   RMS: 0.291
   RMS: 1.086
   RMS: 0.291
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.524
   RMS: 0.891
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.368
   RMS: 0.368
   RMS: 0.392
   RMS: 0.368
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.618
   RMS: 0.742
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.554
   RMS: 0.428
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.240
   RMS: 0.812
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.348
   RMS: 0.897
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.848
   RMS: 0.848
   RMS: 2.877
   RMS: 0.848
   Unrecognised keyword: pdb1qkz_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 3.956
   RMS: 0.812
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rhh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.670
   RMS: 0.976
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 1.531
   RMS: 0.951
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.054
   RMS: 0.997
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.002
   RMS: 1.002
   RMS: 1.361
   RMS: 1.002
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.983
   RMS: 0.983
   RMS: 1.927
   RMS: 0.983
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 1.410
   RMS: 0.977
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.083
   RMS: 1.083
   RMS: 1.770
   RMS: 1.083
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.152
   RMS: 1.152
   RMS: 2.064
   RMS: 1.152
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.189
   RMS: 1.189
   RMS: 2.400
   RMS: 1.189
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 1.585
   RMS: 0.971
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.086
   RMS: 1.086
   RMS: 1.632
   RMS: 1.086
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.038
   RMS: 1.038
   RMS: 3.748
   RMS: 1.038
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.058
   RMS: 1.058
   RMS: 1.852
   RMS: 1.058
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 1.517
   RMS: 1.012
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.997
   RMS: 0.997
   RMS: 1.652
   RMS: 0.997
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 1.961
   RMS: 0.970
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.052
   RMS: 1.052
   RMS: 1.288
   RMS: 1.052
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.043
   RMS: 1.043
   RMS: 1.996
   RMS: 1.043
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.092
   RMS: 1.092
   RMS: 2.195
   RMS: 1.092
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.992
   RMS: 0.992
   RMS: 3.608
   RMS: 0.992
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 1.343
   RMS: 0.890
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.940
   RMS: 0.940
   RMS: 1.409
   RMS: 0.940
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.090
   RMS: 1.090
   RMS: 4.153
   RMS: 1.090
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 1.283
   RMS: 0.935
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.128
   RMS: 1.128
   RMS: 2.206
   RMS: 1.128
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 1.452
   RMS: 0.981
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.117
   RMS: 1.117
   RMS: 1.963
   RMS: 1.117
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.955
   RMS: 0.955
   RMS: 3.877
   RMS: 0.955
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.594
   RMS: 0.899
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.243
   RMS: 0.918
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.012
   RMS: 1.012
   RMS: 1.009
   RMS: 1.012
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 1.802
   RMS: 1.024
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.154
   RMS: 1.154
   RMS: 1.671
   RMS: 1.154
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.181
   RMS: 1.181
   RMS: 1.355
   RMS: 1.181
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.068
   RMS: 1.068
   RMS: 1.603
   RMS: 1.068
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.146
   RMS: 1.146
   RMS: 2.061
   RMS: 1.146
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.149
   RMS: 1.149
   RMS: 1.833
   RMS: 1.149
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.172
   RMS: 1.172
   RMS: 1.782
   RMS: 1.172
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 1.047
   RMS: 0.915
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.008
   RMS: 1.008
   RMS: 2.499
   RMS: 1.008
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.063
   RMS: 1.063
   RMS: 3.364
   RMS: 1.063
   Unrecognised keyword: pdb1qnz_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.150
   RMS: 1.150
   RMS: 3.867
   RMS: 1.150
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1rih_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.584
   RMS: 0.584
   RMS: 0.377
   RMS: 0.584
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.839
   RMS: 0.679
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 0.449
   RMS: 0.506
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.496
   RMS: 0.496
   RMS: 0.705
   RMS: 0.496
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.517
   RMS: 0.517
   RMS: 1.221
   RMS: 0.517
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.832
   RMS: 0.832
   RMS: 0.573
   RMS: 0.832
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.472
   RMS: 0.845
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.547
   RMS: 0.887
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.629
   RMS: 0.629
   RMS: 0.447
   RMS: 0.629
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.433
   RMS: 0.700
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 3.255
   RMS: 0.658
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.362
   RMS: 0.686
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.667
   RMS: 0.667
   RMS: 0.836
   RMS: 0.667
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.472
   RMS: 0.415
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.588
   RMS: 0.711
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.727
   RMS: 0.789
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.562
   RMS: 0.549
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.820
   RMS: 0.820
   RMS: 1.531
   RMS: 0.820
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.443
   RMS: 0.738
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.332
   RMS: 0.728
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.564
   RMS: 0.572
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 3.509
   RMS: 0.743
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.365
   RMS: 0.365
   RMS: 0.489
   RMS: 0.365
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.628
   RMS: 0.863
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.497
   RMS: 0.455
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.436
   RMS: 0.748
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.618
   RMS: 0.618
   RMS: 3.907
   RMS: 0.618
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 3.707
   RMS: 0.555
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 0.712
   RMS: 0.591
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 0.882
   RMS: 0.604
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.263
   RMS: 0.702
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.337
   RMS: 0.903
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 0.772
   RMS: 0.913
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.303
   RMS: 0.652
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.965
   RMS: 0.965
   RMS: 0.540
   RMS: 0.965
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.663
   RMS: 0.901
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 0.349
   RMS: 0.938
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 0.831
   RMS: 0.649
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 1.263
   RMS: 0.612
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 2.843
   RMS: 0.704
   Unrecognised keyword: pdb1rhh_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 3.751
   RMS: 0.838
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1rjl_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.366
   RMS: 0.366
   RMS: 0.627
   RMS: 0.366
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.380
   RMS: 0.483
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.819
   RMS: 0.545
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.589
   RMS: 0.589
   RMS: 1.063
   RMS: 0.589
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.731
   RMS: 0.744
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 0.703
   RMS: 0.762
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 1.756
   RMS: 0.826
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.218
   RMS: 0.309
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.549
   RMS: 0.771
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.643
   RMS: 0.643
   RMS: 3.224
   RMS: 0.643
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.717
   RMS: 0.717
   RMS: 0.335
   RMS: 0.717
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 0.849
   RMS: 0.439
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.462
   RMS: 0.512
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.691
   RMS: 0.691
   RMS: 0.643
   RMS: 0.691
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.459
   RMS: 0.807
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.515
   RMS: 0.539
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 1.365
   RMS: 0.699
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 3.369
   RMS: 0.581
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 1.021
   RMS: 0.547
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.309
   RMS: 0.332
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 3.491
   RMS: 0.669
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.523
   RMS: 0.523
   RMS: 0.312
   RMS: 0.523
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 0.896
   RMS: 0.821
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.433
   RMS: 0.509
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.565
   RMS: 0.663
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 3.747
   RMS: 0.326
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.346
   RMS: 0.346
   RMS: 3.548
   RMS: 0.346
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.486
   RMS: 0.458
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.775
   RMS: 0.700
   Unrecognised keyword: pdb1rih_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.447
   RMS: 0.688
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.450
   RMS: 0.823
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.528
   RMS: 0.825
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.739
   RMS: 0.739
   RMS: 0.195
   RMS: 0.739
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 0.691
   RMS: 0.874
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.846
   RMS: 0.846
   RMS: 0.760
   RMS: 0.846
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 0.286
   RMS: 0.819
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 0.639
   RMS: 0.343
   Unrecognised keyword: pdb1rih_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.284
   RMS: 0.412
   Unrecognised keyword: pdb1rih_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 2.793
   RMS: 0.798
   Unrecognised keyword: pdb1rih_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.844
   RMS: 0.844
   RMS: 3.605
   RMS: 0.844
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1rz7_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 0.633
   RMS: 0.597
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 1.255
   RMS: 0.650
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 1.048
   RMS: 0.620
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.119
   RMS: 0.841
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.881
   RMS: 0.881
   RMS: 1.223
   RMS: 0.881
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 2.078
   RMS: 0.928
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.395
   RMS: 0.395
   RMS: 0.675
   RMS: 0.395
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 0.970
   RMS: 0.839
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.191
   RMS: 0.687
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.898
   RMS: 0.773
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.888
   RMS: 0.484
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.874
   RMS: 0.596
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.159
   RMS: 0.803
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.505
   RMS: 0.915
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.649
   RMS: 0.649
   RMS: 1.033
   RMS: 0.649
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.725
   RMS: 0.725
   RMS: 1.526
   RMS: 0.725
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 3.218
   RMS: 0.551
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.853
   RMS: 0.556
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 0.582
   RMS: 0.382
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.523
   RMS: 0.737
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.471
   RMS: 0.630
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.902
   RMS: 0.902
   RMS: 1.416
   RMS: 0.902
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.799
   RMS: 0.593
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.082
   RMS: 0.735
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.384
   RMS: 0.384
   RMS: 3.565
   RMS: 0.384
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.381
   RMS: 0.381
   RMS: 3.324
   RMS: 0.381
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.361
   RMS: 0.484
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.771
   RMS: 0.771
   RMS: 0.557
   RMS: 0.771
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 0.955
   RMS: 0.811
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.927
   RMS: 0.927
   RMS: 0.885
   RMS: 0.927
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.943
   RMS: 0.943
   RMS: 0.582
   RMS: 0.943
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.676
   RMS: 0.781
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.974
   RMS: 0.974
   RMS: 1.246
   RMS: 0.974
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.920
   RMS: 0.920
   RMS: 1.041
   RMS: 0.920
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 0.850
   RMS: 0.912
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.408
   RMS: 0.408
   RMS: 0.496
   RMS: 0.408
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.444
   RMS: 0.444
   RMS: 1.606
   RMS: 0.444
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 2.792
   RMS: 0.885
   Unrecognised keyword: pdb1rjl_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.899
   RMS: 0.899
   RMS: 3.474
   RMS: 0.899
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1rzf_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.360
   RMS: 0.360
   RMS: 0.942
   RMS: 0.360
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.206
   RMS: 0.596
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.543
   RMS: 0.602
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.726
   RMS: 0.630
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 1.634
   RMS: 0.702
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 0.498
   RMS: 0.460
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 0.434
   RMS: 0.572
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 3.430
   RMS: 0.590
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.650
   RMS: 0.650
   RMS: 0.607
   RMS: 0.650
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.581
   RMS: 0.581
   RMS: 0.681
   RMS: 0.581
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.287
   RMS: 0.287
   RMS: 0.459
   RMS: 0.287
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.694
   RMS: 0.630
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.686
   RMS: 0.686
   RMS: 0.502
   RMS: 0.686
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.769
   RMS: 0.329
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.731
   RMS: 0.731
   RMS: 1.686
   RMS: 0.731
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.548
   RMS: 0.748
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.197
   RMS: 0.608
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.433
   RMS: 0.497
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.740
   RMS: 0.598
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.339
   RMS: 0.339
   RMS: 0.208
   RMS: 0.339
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.899
   RMS: 0.697
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.315
   RMS: 0.315
   RMS: 0.409
   RMS: 0.315
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.542
   RMS: 0.542
   RMS: 0.679
   RMS: 0.542
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 3.943
   RMS: 0.556
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.491
   RMS: 0.491
   RMS: 3.714
   RMS: 0.491
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.575
   RMS: 0.575
   RMS: 0.620
   RMS: 0.575
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.484
   RMS: 0.490
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.621
   RMS: 0.621
   RMS: 0.490
   RMS: 0.621
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 0.414
   RMS: 0.718
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.558
   RMS: 0.721
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.375
   RMS: 0.657
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 0.777
   RMS: 0.763
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.726
   RMS: 0.775
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 0.551
   RMS: 0.787
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 0.623
   RMS: 0.501
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 1.563
   RMS: 0.565
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 2.956
   RMS: 0.688
   Unrecognised keyword: pdb1rz7_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.836
   RMS: 0.745
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1rzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 1.109
   RMS: 0.544
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.652
   RMS: 0.652
   RMS: 0.900
   RMS: 0.652
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.840
   RMS: 0.672
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.716
   RMS: 0.716
   RMS: 1.477
   RMS: 0.716
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.555
   RMS: 0.555
   RMS: 0.765
   RMS: 0.555
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.619
   RMS: 0.619
   RMS: 0.653
   RMS: 0.619
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.611
   RMS: 0.611
   RMS: 3.317
   RMS: 0.611
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 0.837
   RMS: 0.669
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.597
   RMS: 0.597
   RMS: 1.300
   RMS: 0.597
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.403
   RMS: 0.403
   RMS: 0.670
   RMS: 0.403
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.947
   RMS: 0.592
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 1.035
   RMS: 0.664
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 0.885
   RMS: 0.402
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.456
   RMS: 0.748
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 3.497
   RMS: 0.703
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 1.464
   RMS: 0.687
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.966
   RMS: 0.545
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.635
   RMS: 0.635
   RMS: 3.464
   RMS: 0.635
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.991
   RMS: 0.422
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.690
   RMS: 0.690
   RMS: 0.872
   RMS: 0.690
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.432
   RMS: 0.432
   RMS: 0.806
   RMS: 0.432
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.614
   RMS: 0.614
   RMS: 0.937
   RMS: 0.614
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 3.962
   RMS: 0.576
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 3.823
   RMS: 0.547
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 0.978
   RMS: 0.587
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.605
   RMS: 0.605
   RMS: 1.337
   RMS: 0.605
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.585
   RMS: 0.585
   RMS: 0.760
   RMS: 0.585
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.714
   RMS: 0.714
   RMS: 0.785
   RMS: 0.714
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 1.147
   RMS: 0.709
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.885
   RMS: 0.657
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 0.756
   RMS: 0.769
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 1.282
   RMS: 0.783
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 0.797
   RMS: 0.765
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 1.101
   RMS: 0.561
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.609
   RMS: 0.609
   RMS: 1.385
   RMS: 0.609
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.046
   RMS: 0.706
   Unrecognised keyword: pdb1rzf_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 3.810
   RMS: 0.809
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1s3k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.875
   RMS: 0.875
   RMS: 1.558
   RMS: 0.875
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.913
   RMS: 0.913
   RMS: 1.629
   RMS: 0.913
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.952
   RMS: 0.952
   RMS: 2.297
   RMS: 0.952
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 0.987
   RMS: 0.651
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 1.288
   RMS: 0.793
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.241
   RMS: 0.768
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 1.277
   RMS: 0.798
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.631
   RMS: 0.631
   RMS: 1.684
   RMS: 0.631
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 1.209
   RMS: 0.543
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 1.572
   RMS: 0.744
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 0.913
   RMS: 0.831
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.666
   RMS: 0.666
   RMS: 1.346
   RMS: 0.666
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 1.001
   RMS: 0.799
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.181
   RMS: 0.663
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 0.704
   RMS: 0.700
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.942
   RMS: 0.565
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 3.441
   RMS: 0.831
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 1.081
   RMS: 0.539
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.900
   RMS: 0.900
   RMS: 1.759
   RMS: 0.900
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.987
   RMS: 0.593
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.553
   RMS: 0.808
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 3.415
   RMS: 0.572
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.579
   RMS: 0.579
   RMS: 3.277
   RMS: 0.579
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.832
   RMS: 0.601
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 1.336
   RMS: 0.728
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 1.400
   RMS: 0.758
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.371
   RMS: 0.926
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.947
   RMS: 0.947
   RMS: 1.028
   RMS: 0.947
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.228
   RMS: 0.779
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.972
   RMS: 0.972
   RMS: 1.557
   RMS: 0.972
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 1.724
   RMS: 0.954
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.206
   RMS: 0.945
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.796
   RMS: 0.602
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.637
   RMS: 0.637
   RMS: 1.679
   RMS: 0.637
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 3.014
   RMS: 0.843
   Unrecognised keyword: pdb1rzg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 3.334
   RMS: 0.891
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1sbs_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.298
   RMS: 0.298
   RMS: 0.562
   RMS: 0.298
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.320
   RMS: 0.320
   RMS: 1.350
   RMS: 0.320
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.847
   RMS: 0.744
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.358
   RMS: 0.644
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 3.622
   RMS: 0.659
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 0.772
   RMS: 0.677
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 0.821
   RMS: 0.793
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 0.594
   RMS: 0.696
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.453
   RMS: 0.453
   RMS: 0.590
   RMS: 0.453
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.402
   RMS: 0.402
   RMS: 1.000
   RMS: 0.402
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.539
   RMS: 0.539
   RMS: 0.923
   RMS: 0.539
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.928
   RMS: 0.928
   RMS: 1.992
   RMS: 0.928
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 3.819
   RMS: 0.934
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.808
   RMS: 0.808
   RMS: 1.673
   RMS: 0.808
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 0.884
   RMS: 0.760
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 3.903
   RMS: 0.483
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 0.716
   RMS: 0.697
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.280
   RMS: 0.280
   RMS: 0.611
   RMS: 0.280
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.703
   RMS: 0.698
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.400
   RMS: 0.400
   RMS: 0.685
   RMS: 0.400
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 4.294
   RMS: 0.800
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 4.080
   RMS: 0.805
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.070
   RMS: 0.796
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.857
   RMS: 0.702
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.405
   RMS: 0.405
   RMS: 0.455
   RMS: 0.405
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 0.369
   RMS: 0.324
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.344
   RMS: 0.344
   RMS: 0.952
   RMS: 0.344
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.646
   RMS: 0.807
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.322
   RMS: 0.322
   RMS: 0.551
   RMS: 0.322
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 0.687
   RMS: 0.703
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.438
   RMS: 0.438
   RMS: 0.774
   RMS: 0.438
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.710
   RMS: 0.710
   RMS: 1.056
   RMS: 0.710
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 1.747
   RMS: 0.809
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.182
   RMS: 0.787
   Unrecognised keyword: pdb1s3k_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 4.170
   RMS: 0.742
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1seq_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.313
   RMS: 0.313
   RMS: 1.392
   RMS: 0.313
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.781
   RMS: 0.781
   RMS: 0.765
   RMS: 0.781
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.533
   RMS: 0.705
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.372
   RMS: 0.727
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.510
   RMS: 0.735
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.805
   RMS: 0.805
   RMS: 0.881
   RMS: 0.805
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.586
   RMS: 0.705
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.478
   RMS: 0.478
   RMS: 0.410
   RMS: 0.478
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.409
   RMS: 0.409
   RMS: 1.056
   RMS: 0.409
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 0.602
   RMS: 0.551
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 1.820
   RMS: 0.945
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.951
   RMS: 0.951
   RMS: 3.665
   RMS: 0.951
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 1.704
   RMS: 0.850
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.801
   RMS: 0.801
   RMS: 0.926
   RMS: 0.801
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 3.602
   RMS: 0.454
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.841
   RMS: 0.724
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.306
   RMS: 0.306
   RMS: 0.247
   RMS: 0.306
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.814
   RMS: 0.705
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.292
   RMS: 0.421
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 4.150
   RMS: 0.856
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.954
   RMS: 0.841
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.105
   RMS: 0.835
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.765
   RMS: 0.765
   RMS: 1.164
   RMS: 0.765
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.401
   RMS: 0.401
   RMS: 0.324
   RMS: 0.401
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 0.469
   RMS: 0.363
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.311
   RMS: 0.311
   RMS: 1.125
   RMS: 0.311
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.570
   RMS: 0.854
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.373
   RMS: 0.373
   RMS: 0.361
   RMS: 0.373
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.689
   RMS: 0.734
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.564
   RMS: 0.472
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 1.271
   RMS: 0.750
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.821
   RMS: 0.821
   RMS: 1.306
   RMS: 0.821
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 2.889
   RMS: 0.835
   Unrecognised keyword: pdb1sbs_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 3.951
   RMS: 0.778
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1sy6_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 1.840
   RMS: 0.845
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 1.289
   RMS: 0.748
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 4.079
   RMS: 0.726
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 1.753
   RMS: 0.776
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.537
   RMS: 0.863
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.803
   RMS: 0.803
   RMS: 1.551
   RMS: 0.803
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 1.423
   RMS: 0.506
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 1.953
   RMS: 0.446
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 1.888
   RMS: 0.624
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.019
   RMS: 1.019
   RMS: 2.754
   RMS: 1.019
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.003
   RMS: 1.003
   RMS: 4.404
   RMS: 1.003
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.919
   RMS: 0.919
   RMS: 2.548
   RMS: 0.919
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 1.944
   RMS: 0.861
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.520
   RMS: 0.520
   RMS: 4.318
   RMS: 0.520
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.784
   RMS: 0.796
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.335
   RMS: 0.335
   RMS: 1.294
   RMS: 0.335
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.790
   RMS: 0.790
   RMS: 1.665
   RMS: 0.790
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.474
   RMS: 0.474
   RMS: 1.512
   RMS: 0.474
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 4.965
   RMS: 0.911
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 4.758
   RMS: 0.917
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 1.976
   RMS: 0.870
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 1.876
   RMS: 0.812
   Unrecognised keyword: pdb1seq_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.439
   RMS: 0.439
   RMS: 1.461
   RMS: 0.439
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.324
   RMS: 0.324
   RMS: 1.438
   RMS: 0.324
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.326
   RMS: 0.326
   RMS: 2.124
   RMS: 0.326
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.897
   RMS: 0.897
   RMS: 1.697
   RMS: 0.897
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.418
   RMS: 0.418
   RMS: 1.352
   RMS: 0.418
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.666
   RMS: 0.760
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.433
   RMS: 0.433
   RMS: 1.757
   RMS: 0.433
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 2.036
   RMS: 0.807
   Unrecognised keyword: pdb1seq_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 2.270
   RMS: 0.855
   Unrecognised keyword: pdb1seq_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.870
   RMS: 0.870
   RMS: 3.587
   RMS: 0.870
   Unrecognised keyword: pdb1seq_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.836
   RMS: 0.836
   RMS: 4.761
   RMS: 0.836
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1t2q_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.806
   RMS: 0.806
   RMS: 0.630
   RMS: 0.806
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.704
   RMS: 0.704
   RMS: 3.152
   RMS: 0.704
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.385
   RMS: 0.800
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.961
   RMS: 0.494
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.500
   RMS: 0.500
   RMS: 0.454
   RMS: 0.500
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.773
   RMS: 0.742
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.827
   RMS: 0.827
   RMS: 0.419
   RMS: 0.827
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.510
   RMS: 0.510
   RMS: 0.454
   RMS: 0.510
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.683
   RMS: 0.683
   RMS: 1.242
   RMS: 0.683
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.600
   RMS: 0.600
   RMS: 3.281
   RMS: 0.600
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.532
   RMS: 0.532
   RMS: 0.958
   RMS: 0.532
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.270
   RMS: 0.270
   RMS: 0.328
   RMS: 0.270
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 3.394
   RMS: 0.734
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.434
   RMS: 0.560
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.962
   RMS: 0.837
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.480
   RMS: 0.494
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 0.666
   RMS: 0.673
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.312
   RMS: 0.312
   RMS: 3.649
   RMS: 0.312
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.333
   RMS: 0.333
   RMS: 3.462
   RMS: 0.333
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.446
   RMS: 0.446
   RMS: 0.462
   RMS: 0.446
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 0.880
   RMS: 0.705
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 0.560
   RMS: 0.743
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.845
   RMS: 0.845
   RMS: 0.594
   RMS: 0.845
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.561
   RMS: 0.837
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.359
   RMS: 0.800
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 0.793
   RMS: 0.895
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 0.937
   RMS: 0.911
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.309
   RMS: 0.863
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.308
   RMS: 0.308
   RMS: 0.673
   RMS: 0.308
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.425
   RMS: 0.425
   RMS: 1.177
   RMS: 0.425
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.878
   RMS: 0.878
   RMS: 2.749
   RMS: 0.878
   Unrecognised keyword: pdb1sy6_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.513
   RMS: 0.935
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1t4k_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 3.501
   RMS: 0.538
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.422
   RMS: 0.422
   RMS: 0.656
   RMS: 0.422
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 0.783
   RMS: 0.823
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 0.367
   RMS: 0.562
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.552
   RMS: 0.711
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.783
   RMS: 0.735
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 0.798
   RMS: 0.612
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.908
   RMS: 0.908
   RMS: 1.763
   RMS: 0.908
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.970
   RMS: 0.970
   RMS: 3.680
   RMS: 0.970
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.439
   RMS: 0.893
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.713
   RMS: 0.783
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 3.761
   RMS: 0.604
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.584
   RMS: 0.594
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.624
   RMS: 0.663
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.626
   RMS: 0.626
   RMS: 0.509
   RMS: 0.626
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.617
   RMS: 0.543
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 4.122
   RMS: 0.807
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 3.918
   RMS: 0.772
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.837
   RMS: 0.837
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.376
   RMS: 0.376
   RMS: 0.840
   RMS: 0.376
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.646
   RMS: 0.646
   RMS: 0.380
   RMS: 0.646
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.311
   RMS: 0.752
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.778
   RMS: 0.778
   RMS: 0.897
   RMS: 0.778
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 0.541
   RMS: 0.481
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.759
   RMS: 0.759
   RMS: 0.525
   RMS: 0.759
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.824
   RMS: 0.721
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.615
   RMS: 0.774
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.896
   RMS: 0.785
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.561
   RMS: 0.857
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 3.055
   RMS: 0.514
   Unrecognised keyword: pdb1t2q_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.514
   RMS: 0.514
   RMS: 3.996
   RMS: 0.514
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1tjg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.417
   RMS: 0.417
   RMS: 3.150
   RMS: 0.417
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.426
   RMS: 0.671
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 3.348
   RMS: 0.608
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.612
   RMS: 0.612
   RMS: 3.429
   RMS: 0.612
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.738
   RMS: 0.738
   RMS: 3.250
   RMS: 0.738
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 3.107
   RMS: 0.561
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 2.849
   RMS: 0.882
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.837
   RMS: 0.837
   RMS: 0.912
   RMS: 0.837
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 3.142
   RMS: 0.756
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.255
   RMS: 0.687
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.515
   RMS: 0.515
   RMS: 0.764
   RMS: 0.515
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 3.336
   RMS: 0.601
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.465
   RMS: 0.677
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.681
   RMS: 0.681
   RMS: 3.401
   RMS: 0.681
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 3.281
   RMS: 0.624
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.754
   RMS: 0.720
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 1.717
   RMS: 0.689
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 3.100
   RMS: 0.748
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 3.567
   RMS: 0.639
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.628
   RMS: 0.628
   RMS: 3.333
   RMS: 0.628
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 3.392
   RMS: 0.773
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.791
   RMS: 0.791
   RMS: 3.336
   RMS: 0.791
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.501
   RMS: 0.501
   RMS: 3.233
   RMS: 0.501
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.787
   RMS: 0.787
   RMS: 3.421
   RMS: 0.787
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.730
   RMS: 0.730
   RMS: 3.441
   RMS: 0.730
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.754
   RMS: 0.754
   RMS: 3.154
   RMS: 0.754
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 3.373
   RMS: 0.709
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 2.684
   RMS: 0.688
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 1.352
   RMS: 0.569
   Unrecognised keyword: pdb1t4k_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.481
   RMS: 0.596
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1txv_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.807
   RMS: 0.807
   RMS: 0.947
   RMS: 0.807
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.623
   RMS: 0.623
   RMS: 0.556
   RMS: 0.623
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.551
   RMS: 0.660
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.748
   RMS: 0.770
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.639
   RMS: 0.639
   RMS: 0.262
   RMS: 0.639
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 1.384
   RMS: 0.930
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.373
   RMS: 0.916
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.855
   RMS: 0.855
   RMS: 1.269
   RMS: 0.855
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.748
   RMS: 0.748
   RMS: 0.544
   RMS: 0.748
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 3.391
   RMS: 0.543
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.647
   RMS: 0.647
   RMS: 0.584
   RMS: 0.647
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.676
   RMS: 0.676
   RMS: 0.695
   RMS: 0.676
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.721
   RMS: 0.721
   RMS: 0.635
   RMS: 0.721
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 0.350
   RMS: 0.590
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 3.784
   RMS: 0.779
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 3.598
   RMS: 0.750
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.784
   RMS: 0.784
   RMS: 0.746
   RMS: 0.784
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 1.034
   RMS: 0.576
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 0.366
   RMS: 0.636
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 0.497
   RMS: 0.768
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 0.781
   RMS: 0.809
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.356
   RMS: 0.356
   RMS: 0.281
   RMS: 0.356
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.550
   RMS: 0.772
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 0.697
   RMS: 0.679
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.772
   RMS: 0.772
   RMS: 0.128
   RMS: 0.772
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.786
   RMS: 0.786
   RMS: 0.947
   RMS: 0.786
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.092
   RMS: 0.818
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 2.712
   RMS: 0.507
   Unrecognised keyword: pdb1tjg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 3.601
   RMS: 0.481
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1tzg_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 0.761
   RMS: 0.590
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 0.846
   RMS: 0.773
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.838
   RMS: 0.838
   RMS: 0.925
   RMS: 0.838
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 1.084
   RMS: 0.569
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 2.130
   RMS: 0.591
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.462
   RMS: 0.462
   RMS: 3.623
   RMS: 0.462
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 1.585
   RMS: 0.608
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.458
   RMS: 0.458
   RMS: 0.984
   RMS: 0.458
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.679
   RMS: 0.679
   RMS: 3.766
   RMS: 0.679
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.768
   RMS: 0.583
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 1.007
   RMS: 0.825
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.553
   RMS: 0.553
   RMS: 1.037
   RMS: 0.553
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.729
   RMS: 0.729
   RMS: 0.835
   RMS: 0.729
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.511
   RMS: 0.511
   RMS: 4.074
   RMS: 0.511
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 3.810
   RMS: 0.498
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.545
   RMS: 0.545
   RMS: 0.936
   RMS: 0.545
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.794
   RMS: 0.794
   RMS: 0.757
   RMS: 0.794
   Unrecognised keyword: pdb1txv_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.736
   RMS: 0.736
   RMS: 0.754
   RMS: 0.736
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 0.685
   RMS: 0.868
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 1.108
   RMS: 0.847
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.814
   RMS: 0.814
   RMS: 0.755
   RMS: 0.814
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.911
   RMS: 0.911
   RMS: 1.013
   RMS: 0.911
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 0.809
   RMS: 0.884
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.927
   RMS: 0.850
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.435
   RMS: 0.435
   RMS: 1.158
   RMS: 0.435
   Unrecognised keyword: pdb1txv_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.481
   RMS: 0.481
   RMS: 1.757
   RMS: 0.481
   Unrecognised keyword: pdb1txv_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 2.843
   RMS: 0.869
   Unrecognised keyword: pdb1txv_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.823
   RMS: 0.823
   RMS: 3.936
   RMS: 0.823
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1tzh_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.672
   RMS: 0.672
   RMS: 0.646
   RMS: 0.672
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.728
   RMS: 0.728
   RMS: 0.611
   RMS: 0.728
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.383
   RMS: 0.383
   RMS: 0.611
   RMS: 0.383
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.740
   RMS: 0.740
   RMS: 1.615
   RMS: 0.740
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.512
   RMS: 0.724
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 1.273
   RMS: 0.644
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.494
   RMS: 0.494
   RMS: 0.591
   RMS: 0.494
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.642
   RMS: 0.642
   RMS: 3.588
   RMS: 0.642
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.316
   RMS: 0.316
   RMS: 0.556
   RMS: 0.316
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.723
   RMS: 0.750
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.308
   RMS: 0.308
   RMS: 0.597
   RMS: 0.308
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.638
   RMS: 0.594
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 3.921
   RMS: 0.552
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.724
   RMS: 0.470
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.674
   RMS: 0.569
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 0.865
   RMS: 0.464
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.657
   RMS: 0.657
   RMS: 0.436
   RMS: 0.657
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.810
   RMS: 0.810
   RMS: 0.437
   RMS: 0.810
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.813
   RMS: 0.813
   RMS: 0.797
   RMS: 0.813
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.602
   RMS: 0.602
   RMS: 0.494
   RMS: 0.602
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.669
   RMS: 0.849
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.842
   RMS: 0.842
   RMS: 0.929
   RMS: 0.842
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 0.482
   RMS: 0.863
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 0.886
   RMS: 0.547
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.567
   RMS: 0.567
   RMS: 1.432
   RMS: 0.567
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.669
   RMS: 0.669
   RMS: 2.893
   RMS: 0.669
   Unrecognised keyword: pdb1tzg_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 3.796
   RMS: 0.746
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1tzi_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.421
   RMS: 0.421
   RMS: 0.979
   RMS: 0.421
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 0.698
   RMS: 0.565
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.939
   RMS: 0.939
   RMS: 1.801
   RMS: 0.939
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.876
   RMS: 0.876
   RMS: 3.709
   RMS: 0.876
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.760
   RMS: 0.760
   RMS: 1.585
   RMS: 0.760
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.734
   RMS: 0.734
   RMS: 0.873
   RMS: 0.734
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.538
   RMS: 0.538
   RMS: 3.682
   RMS: 0.538
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 0.789
   RMS: 0.648
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.525
   RMS: 0.469
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.771
   RMS: 0.706
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.569
   RMS: 0.569
   RMS: 0.357
   RMS: 0.569
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 4.136
   RMS: 0.756
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 3.935
   RMS: 0.745
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 1.064
   RMS: 0.749
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.763
   RMS: 0.763
   RMS: 1.097
   RMS: 0.763
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.399
   RMS: 0.399
   RMS: 0.391
   RMS: 0.399
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.512
   RMS: 0.512
   RMS: 0.429
   RMS: 0.512
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.552
   RMS: 0.552
   RMS: 1.064
   RMS: 0.552
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.752
   RMS: 0.752
   RMS: 0.556
   RMS: 0.752
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.543
   RMS: 0.543
   RMS: 0.359
   RMS: 0.543
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 0.650
   RMS: 0.749
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.590
   RMS: 0.590
   RMS: 0.578
   RMS: 0.590
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.720
   RMS: 0.720
   RMS: 1.206
   RMS: 0.720
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.773
   RMS: 0.773
   RMS: 1.415
   RMS: 0.773
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.762
   RMS: 0.762
   RMS: 2.892
   RMS: 0.762
   Unrecognised keyword: pdb1tzh_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 3.940
   RMS: 0.819
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1uj3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.608
   RMS: 0.608
   RMS: 0.812
   RMS: 0.608
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.984
   RMS: 0.984
   RMS: 1.388
   RMS: 0.984
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.945
   RMS: 0.945
   RMS: 3.307
   RMS: 0.945
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.824
   RMS: 0.824
   RMS: 0.772
   RMS: 0.824
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.822
   RMS: 0.822
   RMS: 0.313
   RMS: 0.822
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 3.546
   RMS: 0.593
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 0.393
   RMS: 0.698
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.413
   RMS: 0.413
   RMS: 1.238
   RMS: 0.413
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.713
   RMS: 0.713
   RMS: 0.549
   RMS: 0.713
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.594
   RMS: 0.594
   RMS: 0.954
   RMS: 0.594
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.834
   RMS: 0.834
   RMS: 3.599
   RMS: 0.834
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 3.382
   RMS: 0.847
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.840
   RMS: 0.840
   RMS: 0.375
   RMS: 0.840
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.775
   RMS: 0.775
   RMS: 0.675
   RMS: 0.775
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.319
   RMS: 0.319
   RMS: 0.825
   RMS: 0.319
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.419
   RMS: 0.419
   RMS: 0.797
   RMS: 0.419
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.454
   RMS: 0.454
   RMS: 0.528
   RMS: 0.454
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 0.614
   RMS: 0.865
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.464
   RMS: 0.464
   RMS: 1.096
   RMS: 0.464
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.835
   RMS: 0.835
   RMS: 1.129
   RMS: 0.835
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 0.638
   RMS: 0.561
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 0.561
   RMS: 0.764
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.455
   RMS: 0.865
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 2.779
   RMS: 0.849
   Unrecognised keyword: pdb1tzi_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.839
   RMS: 0.839
   RMS: 3.495
   RMS: 0.839
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1um5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.757
   RMS: 0.757
   RMS: 1.338
   RMS: 0.757
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.768
   RMS: 0.768
   RMS: 3.336
   RMS: 0.768
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.641
   RMS: 0.641
   RMS: 1.296
   RMS: 0.641
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.544
   RMS: 0.544
   RMS: 0.654
   RMS: 0.544
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 3.315
   RMS: 0.497
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.440
   RMS: 0.440
   RMS: 0.757
   RMS: 0.440
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 0.781
   RMS: 0.583
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.424
   RMS: 0.424
   RMS: 0.782
   RMS: 0.424
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.483
   RMS: 0.483
   RMS: 0.508
   RMS: 0.483
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.599
   RMS: 0.599
   RMS: 3.729
   RMS: 0.599
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 3.556
   RMS: 0.565
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 0.855
   RMS: 0.596
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.583
   RMS: 0.583
   RMS: 1.187
   RMS: 0.583
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.546
   RMS: 0.546
   RMS: 0.554
   RMS: 0.546
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.632
   RMS: 0.632
   RMS: 0.694
   RMS: 0.632
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.624
   RMS: 0.624
   RMS: 0.871
   RMS: 0.624
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.660
   RMS: 0.660
   RMS: 0.492
   RMS: 0.660
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.707
   RMS: 0.707
   RMS: 0.694
   RMS: 0.707
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.756
   RMS: 0.756
   RMS: 0.903
   RMS: 0.756
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.285
   RMS: 0.724
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.572
   RMS: 0.572
   RMS: 1.095
   RMS: 0.572
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.592
   RMS: 0.592
   RMS: 0.999
   RMS: 0.592
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.709
   RMS: 0.709
   RMS: 2.670
   RMS: 0.709
   Unrecognised keyword: pdb1uj3_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.764
   RMS: 0.764
   RMS: 3.542
   RMS: 0.764
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1uwe_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.551
   RMS: 0.551
   RMS: 2.884
   RMS: 0.551
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 1.044
   RMS: 0.735
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.651
   RMS: 0.651
   RMS: 1.316
   RMS: 0.651
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.831
   RMS: 0.831
   RMS: 2.937
   RMS: 0.831
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.703
   RMS: 0.703
   RMS: 1.543
   RMS: 0.703
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 1.964
   RMS: 0.966
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.673
   RMS: 0.673
   RMS: 1.450
   RMS: 0.673
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 1.697
   RMS: 0.869
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.715
   RMS: 0.715
   RMS: 3.067
   RMS: 0.715
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 3.013
   RMS: 0.712
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 1.312
   RMS: 0.711
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 1.944
   RMS: 0.854
   Unrecognised keyword: pdb1um5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.885
   RMS: 0.885
   RMS: 1.681
   RMS: 0.885
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.994
   RMS: 0.994
   RMS: 1.741
   RMS: 0.994
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.988
   RMS: 0.988
   RMS: 1.428
   RMS: 0.988
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.500
   RMS: 0.917
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.024
   RMS: 1.024
   RMS: 1.752
   RMS: 1.024
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.981
   RMS: 0.981
   RMS: 1.975
   RMS: 0.981
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.986
   RMS: 0.986
   RMS: 1.357
   RMS: 0.986
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.633
   RMS: 0.633
   RMS: 1.419
   RMS: 0.633
   Unrecognised keyword: pdb1um5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.705
   RMS: 0.705
   RMS: 1.215
   RMS: 0.705
   Unrecognised keyword: pdb1um5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.934
   RMS: 0.934
   RMS: 2.742
   RMS: 0.934
   Unrecognised keyword: pdb1um5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.966
   RMS: 0.966
   RMS: 2.884
   RMS: 0.966
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1uwx_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 3.061
   RMS: 0.663
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.524
   RMS: 0.524
   RMS: 3.340
   RMS: 0.524
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.818
   RMS: 0.818
   RMS: 1.315
   RMS: 0.818
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.697
   RMS: 0.697
   RMS: 3.430
   RMS: 0.697
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.950
   RMS: 0.950
   RMS: 3.791
   RMS: 0.950
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.677
   RMS: 0.677
   RMS: 3.503
   RMS: 0.677
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.868
   RMS: 0.868
   RMS: 3.569
   RMS: 0.868
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.123
   RMS: 0.587
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 1.098
   RMS: 0.568
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.576
   RMS: 0.576
   RMS: 3.157
   RMS: 0.576
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.935
   RMS: 0.935
   RMS: 3.605
   RMS: 0.935
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 3.568
   RMS: 0.849
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.971
   RMS: 0.971
   RMS: 3.601
   RMS: 0.971
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.977
   RMS: 0.977
   RMS: 3.363
   RMS: 0.977
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.916
   RMS: 0.916
   RMS: 3.410
   RMS: 0.916
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.018
   RMS: 1.018
   RMS: 3.707
   RMS: 1.018
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.982
   RMS: 0.982
   RMS: 3.684
   RMS: 0.982
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.937
   RMS: 0.937
   RMS: 3.363
   RMS: 0.937
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.492
   RMS: 0.492
   RMS: 3.358
   RMS: 0.492
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.528
   RMS: 0.528
   RMS: 3.015
   RMS: 0.528
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.004
   RMS: 1.004
   RMS: 1.848
   RMS: 1.004
   Unrecognised keyword: pdb1uwe_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.991
   RMS: 0.991
   RMS: 1.183
   RMS: 0.991
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1uyw_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.560
   RMS: 0.560
   RMS: 0.864
   RMS: 0.560
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.799
   RMS: 0.799
   RMS: 3.407
   RMS: 0.799
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.591
   RMS: 0.591
   RMS: 1.024
   RMS: 0.591
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 1.892
   RMS: 0.901
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.577
   RMS: 0.577
   RMS: 1.099
   RMS: 0.577
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 1.550
   RMS: 0.833
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.547
   RMS: 0.547
   RMS: 3.188
   RMS: 0.547
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.561
   RMS: 0.561
   RMS: 3.011
   RMS: 0.561
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.568
   RMS: 0.568
   RMS: 0.753
   RMS: 0.568
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.811
   RMS: 0.811
   RMS: 1.238
   RMS: 0.811
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.796
   RMS: 0.796
   RMS: 1.462
   RMS: 0.796
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.917
   RMS: 0.917
   RMS: 1.438
   RMS: 0.917
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 0.913
   RMS: 0.891
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 1.195
   RMS: 0.893
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.918
   RMS: 0.918
   RMS: 1.664
   RMS: 0.918
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 1.005
   RMS: 1.005
   RMS: 1.692
   RMS: 1.005
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.976
   RMS: 0.976
   RMS: 1.191
   RMS: 0.976
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.820
   RMS: 0.503
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.596
   RMS: 0.596
   RMS: 1.650
   RMS: 0.596
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 2.795
   RMS: 0.938
   Unrecognised keyword: pdb1uwx_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.946
   RMS: 0.946
   RMS: 3.113
   RMS: 0.946
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1uz8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.712
   RMS: 0.712
   RMS: 3.542
   RMS: 0.712
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.535
   RMS: 0.535
   RMS: 0.294
   RMS: 0.535
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 1.108
   RMS: 0.829
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.503
   RMS: 0.503
   RMS: 0.420
   RMS: 0.503
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 0.800
   RMS: 0.659
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.340
   RMS: 0.340
   RMS: 3.656
   RMS: 0.340
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.285
   RMS: 0.285
   RMS: 3.450
   RMS: 0.285
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.406
   RMS: 0.406
   RMS: 0.471
   RMS: 0.406
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.689
   RMS: 0.689
   RMS: 0.725
   RMS: 0.689
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.723
   RMS: 0.723
   RMS: 0.688
   RMS: 0.723
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.843
   RMS: 0.843
   RMS: 0.683
   RMS: 0.843
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.361
   RMS: 0.850
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.742
   RMS: 0.742
   RMS: 0.433
   RMS: 0.742
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 0.944
   RMS: 0.901
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.862
   RMS: 0.862
   RMS: 0.933
   RMS: 0.862
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 0.476
   RMS: 0.849
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.332
   RMS: 0.332
   RMS: 0.517
   RMS: 0.332
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 1.393
   RMS: 0.412
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 2.805
   RMS: 0.825
   Unrecognised keyword: pdb1uyw_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.894
   RMS: 0.894
   RMS: 3.539
   RMS: 0.894
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1vge_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.636
   RMS: 0.636
   RMS: 3.649
   RMS: 0.636
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.437
   RMS: 0.437
   RMS: 3.680
   RMS: 0.437
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.671
   RMS: 0.671
   RMS: 3.677
   RMS: 0.671
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.382
   RMS: 0.382
   RMS: 3.536
   RMS: 0.382
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 2.008
   RMS: 0.782
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.755
   RMS: 0.755
   RMS: 2.123
   RMS: 0.755
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 3.376
   RMS: 0.769
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 3.936
   RMS: 0.706
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.470
   RMS: 0.470
   RMS: 3.589
   RMS: 0.470
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.529
   RMS: 0.529
   RMS: 3.663
   RMS: 0.529
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.548
   RMS: 0.548
   RMS: 3.646
   RMS: 0.548
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.659
   RMS: 0.659
   RMS: 3.514
   RMS: 0.659
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.565
   RMS: 0.565
   RMS: 3.642
   RMS: 0.565
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.598
   RMS: 0.598
   RMS: 3.770
   RMS: 0.598
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 3.396
   RMS: 0.566
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.696
   RMS: 0.696
   RMS: 3.682
   RMS: 0.696
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.722
   RMS: 0.722
   RMS: 2.783
   RMS: 0.722
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.698
   RMS: 0.698
   RMS: 1.842
   RMS: 0.698
   Unrecognised keyword: pdb1uz8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.607
   RMS: 0.607
   RMS: 1.677
   RMS: 0.607
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1w72_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.769
   RMS: 0.769
   RMS: 1.023
   RMS: 0.769
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.417
   RMS: 0.309
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.644
   RMS: 0.644
   RMS: 0.738
   RMS: 0.644
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.562
   RMS: 0.562
   RMS: 3.801
   RMS: 0.562
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.498
   RMS: 0.498
   RMS: 3.574
   RMS: 0.498
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.593
   RMS: 0.593
   RMS: 0.477
   RMS: 0.593
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.509
   RMS: 0.509
   RMS: 0.487
   RMS: 0.509
   Unrecognised keyword: pdb1vge_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.630
   RMS: 0.630
   RMS: 0.579
   RMS: 0.630
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.795
   RMS: 0.795
   RMS: 0.523
   RMS: 0.795
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.802
   RMS: 0.802
   RMS: 0.424
   RMS: 0.802
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.620
   RMS: 0.620
   RMS: 0.348
   RMS: 0.620
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.833
   RMS: 0.833
   RMS: 0.870
   RMS: 0.833
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.826
   RMS: 0.826
   RMS: 0.765
   RMS: 0.826
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.847
   RMS: 0.847
   RMS: 0.521
   RMS: 0.847
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.549
   RMS: 0.549
   RMS: 0.485
   RMS: 0.549
   Unrecognised keyword: pdb1vge_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.587
   RMS: 0.587
   RMS: 1.510
   RMS: 0.587
   Unrecognised keyword: pdb1vge_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.658
   RMS: 0.658
   RMS: 2.881
   RMS: 0.658
   Unrecognised keyword: pdb1vge_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.692
   RMS: 0.737
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1wt5_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 0.971
   RMS: 0.779
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.387
   RMS: 0.387
   RMS: 0.476
   RMS: 0.387
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 4.298
   RMS: 0.887
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 4.109
   RMS: 0.882
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.281
   RMS: 0.857
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.318
   RMS: 0.766
   Unrecognised keyword: pdb1w72_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.378
   RMS: 0.378
   RMS: 0.476
   RMS: 0.378
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.327
   RMS: 0.327
   RMS: 0.595
   RMS: 0.327
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.342
   RMS: 0.342
   RMS: 1.294
   RMS: 0.342
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.767
   RMS: 0.825
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.329
   RMS: 0.329
   RMS: 0.415
   RMS: 0.329
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.699
   RMS: 0.699
   RMS: 0.794
   RMS: 0.699
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.415
   RMS: 0.415
   RMS: 0.746
   RMS: 0.415
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.779
   RMS: 0.779
   RMS: 1.438
   RMS: 0.779
   Unrecognised keyword: pdb1w72_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.863
   RMS: 0.863
   RMS: 1.440
   RMS: 0.863
   Unrecognised keyword: pdb1w72_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.812
   RMS: 0.812
   RMS: 2.986
   RMS: 0.812
   Unrecognised keyword: pdb1w72_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.718
   RMS: 0.718
   RMS: 4.084
   RMS: 0.718
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1y0l_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.645
   RMS: 0.645
   RMS: 0.767
   RMS: 0.645
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.521
   RMS: 0.521
   RMS: 3.866
   RMS: 0.521
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 3.666
   RMS: 0.460
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.556
   RMS: 0.556
   RMS: 0.700
   RMS: 0.556
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.534
   RMS: 0.534
   RMS: 0.772
   RMS: 0.534
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.663
   RMS: 0.663
   RMS: 0.623
   RMS: 0.663
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.798
   RMS: 0.798
   RMS: 0.598
   RMS: 0.798
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.785
   RMS: 0.785
   RMS: 0.614
   RMS: 0.785
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.688
   RMS: 0.688
   RMS: 0.525
   RMS: 0.688
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 0.793
   RMS: 0.857
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.869
   RMS: 0.869
   RMS: 0.932
   RMS: 0.869
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.866
   RMS: 0.866
   RMS: 0.568
   RMS: 0.866
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.490
   RMS: 0.490
   RMS: 0.583
   RMS: 0.490
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.566
   RMS: 0.566
   RMS: 1.451
   RMS: 0.566
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.743
   RMS: 0.743
   RMS: 2.968
   RMS: 0.743
   Unrecognised keyword: pdb1wt5_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.793
   RMS: 0.793
   RMS: 3.760
   RMS: 0.793
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb1yed_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.749
   RMS: 0.749
   RMS: 4.018
   RMS: 0.749
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 3.817
   RMS: 0.724
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.735
   RMS: 0.735
   RMS: 0.985
   RMS: 0.735
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.604
   RMS: 0.604
   RMS: 1.107
   RMS: 0.604
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.484
   RMS: 0.484
   RMS: 0.307
   RMS: 0.484
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.472
   RMS: 0.472
   RMS: 0.466
   RMS: 0.472
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.507
   RMS: 0.507
   RMS: 1.029
   RMS: 0.507
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.427
   RMS: 0.706
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.530
   RMS: 0.530
   RMS: 0.415
   RMS: 0.530
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.625
   RMS: 0.625
   RMS: 0.571
   RMS: 0.625
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.516
   RMS: 0.516
   RMS: 0.425
   RMS: 0.516
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.654
   RMS: 0.654
   RMS: 1.168
   RMS: 0.654
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.726
   RMS: 0.726
   RMS: 1.195
   RMS: 0.726
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.700
   RMS: 0.700
   RMS: 2.768
   RMS: 0.700
   Unrecognised keyword: pdb1y0l_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.664
   RMS: 0.664
   RMS: 3.808
   RMS: 0.664
   Unrecognised keyword: pdb1yed_chothia.pdb pdb1yee_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.317
   RMS: 0.317
   RMS: 0.468
   RMS: 0.317
   Unrecognised keyword: pdb1yed_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.460
   RMS: 0.460
   RMS: 3.507
   RMS: 0.460
   Unrecognised keyword: pdb1yed_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.737
   RMS: 0.737
   RMS: 3.976
   RMS: 0.737
   Unrecognised keyword: pdb1yed_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 4.030
   RMS: 0.747
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 4.060
   RMS: 0.884
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.890
   RMS: 0.890
   RMS: 3.682
   RMS: 0.890
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.825
   RMS: 0.776
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 4.184
   RMS: 0.929
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.948
   RMS: 0.948
   RMS: 4.165
   RMS: 0.948
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.889
   RMS: 0.889
   RMS: 3.755
   RMS: 0.889
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.343
   RMS: 0.343
   RMS: 3.687
   RMS: 0.343
   Unrecognised keyword: pdb1yed_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.506
   RMS: 0.506
   RMS: 3.424
   RMS: 0.506
   Unrecognised keyword: pdb1yed_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 2.217
   RMS: 0.865
   Unrecognised keyword: pdb1yed_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.904
   RMS: 0.904
   RMS: 0.696
   RMS: 0.904
   Unrecognised keyword: pdb1yee_chothia.pdb pdb1yjd_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.467
   RMS: 0.467
   RMS: 3.300
   RMS: 0.467
   Unrecognised keyword: pdb1yee_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 3.712
   RMS: 0.678
   Unrecognised keyword: pdb1yee_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.758
   RMS: 0.758
   RMS: 3.829
   RMS: 0.758
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.901
   RMS: 0.901
   RMS: 3.852
   RMS: 0.901
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 3.472
   RMS: 0.903
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.733
   RMS: 0.733
   RMS: 3.616
   RMS: 0.733
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.956
   RMS: 0.956
   RMS: 4.006
   RMS: 0.956
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.907
   RMS: 0.907
   RMS: 3.932
   RMS: 0.907
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.895
   RMS: 0.895
   RMS: 3.568
   RMS: 0.895
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.361
   RMS: 0.361
   RMS: 3.477
   RMS: 0.361
   Unrecognised keyword: pdb1yee_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.431
   RMS: 0.431
   RMS: 3.307
   RMS: 0.431
   Unrecognised keyword: pdb1yee_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.849
   RMS: 0.849
   RMS: 1.997
   RMS: 0.849
   Unrecognised keyword: pdb1yee_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.892
   RMS: 0.892
   RMS: 0.863
   RMS: 0.892
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb1yy8_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.744
   RMS: 0.744
   RMS: 0.757
   RMS: 0.744
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.747
   RMS: 0.747
   RMS: 0.844
   RMS: 0.747
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.854
   RMS: 0.854
   RMS: 0.802
   RMS: 0.854
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.873
   RMS: 0.873
   RMS: 0.595
   RMS: 0.873
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.789
   RMS: 0.789
   RMS: 0.599
   RMS: 0.789
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.938
   RMS: 0.938
   RMS: 1.114
   RMS: 0.938
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.924
   RMS: 0.924
   RMS: 1.113
   RMS: 0.924
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.879
   RMS: 0.879
   RMS: 0.679
   RMS: 0.879
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.441
   RMS: 0.441
   RMS: 0.522
   RMS: 0.441
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.493
   RMS: 0.493
   RMS: 1.423
   RMS: 0.493
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.856
   RMS: 0.856
   RMS: 2.725
   RMS: 0.856
   Unrecognised keyword: pdb1yjd_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.953
   RMS: 0.953
   RMS: 3.390
   RMS: 0.953
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb1za3_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.702
   RMS: 0.702
   RMS: 0.926
   RMS: 0.702
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.800
   RMS: 0.800
   RMS: 0.799
   RMS: 0.800
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.829
   RMS: 0.829
   RMS: 0.650
   RMS: 0.829
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.601
   RMS: 0.601
   RMS: 0.771
   RMS: 0.601
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.857
   RMS: 0.857
   RMS: 1.208
   RMS: 0.857
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.850
   RMS: 0.850
   RMS: 0.951
   RMS: 0.850
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.853
   RMS: 0.853
   RMS: 0.977
   RMS: 0.853
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.724
   RMS: 0.724
   RMS: 0.627
   RMS: 0.724
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.766
   RMS: 0.766
   RMS: 1.934
   RMS: 0.766
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.610
   RMS: 0.610
   RMS: 3.102
   RMS: 0.610
   Unrecognised keyword: pdb1yy8_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.687
   RMS: 0.687
   RMS: 3.922
   RMS: 0.687
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2a1w_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.428
   RMS: 0.428
   RMS: 0.189
   RMS: 0.428
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.455
   RMS: 0.455
   RMS: 0.858
   RMS: 0.455
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.746
   RMS: 0.746
   RMS: 0.317
   RMS: 0.746
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.469
   RMS: 0.469
   RMS: 0.358
   RMS: 0.469
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.711
   RMS: 0.711
   RMS: 0.569
   RMS: 0.711
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.497
   RMS: 0.497
   RMS: 0.386
   RMS: 0.497
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.678
   RMS: 0.678
   RMS: 0.992
   RMS: 0.678
   Unrecognised keyword: pdb1za3_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 1.351
   RMS: 0.770
   Unrecognised keyword: pdb1za3_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.745
   RMS: 0.745
   RMS: 2.885
   RMS: 0.745
   Unrecognised keyword: pdb1za3_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.727
   RMS: 0.727
   RMS: 3.854
   RMS: 0.727
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2a77_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.309
   RMS: 0.309
   RMS: 0.811
   RMS: 0.309
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.903
   RMS: 0.903
   RMS: 0.347
   RMS: 0.903
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.367
   RMS: 0.367
   RMS: 0.431
   RMS: 0.367
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.770
   RMS: 0.770
   RMS: 0.579
   RMS: 0.770
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.412
   RMS: 0.412
   RMS: 0.494
   RMS: 0.412
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.783
   RMS: 0.783
   RMS: 0.910
   RMS: 0.783
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.882
   RMS: 0.882
   RMS: 1.490
   RMS: 0.882
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.874
   RMS: 0.874
   RMS: 2.958
   RMS: 0.874
   Unrecognised keyword: pdb2a1w_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.901
   RMS: 0.828
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2f5a_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.942
   RMS: 0.942
   RMS: 0.633
   RMS: 0.942
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.363
   RMS: 0.363
   RMS: 1.099
   RMS: 0.363
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 1.016
   RMS: 0.782
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.420
   RMS: 0.420
   RMS: 0.711
   RMS: 0.420
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.782
   RMS: 0.782
   RMS: 0.444
   RMS: 0.782
   Unrecognised keyword: pdb2a77_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.865
   RMS: 0.865
   RMS: 1.629
   RMS: 0.865
   Unrecognised keyword: pdb2a77_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.930
   RMS: 0.930
   RMS: 2.975
   RMS: 0.930
   Unrecognised keyword: pdb2a77_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 3.606
   RMS: 0.841
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb2fb4_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.929
   RMS: 0.929
   RMS: 0.601
   RMS: 0.929
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.750
   RMS: 0.750
   RMS: 0.576
   RMS: 0.750
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.915
   RMS: 0.915
   RMS: 0.270
   RMS: 0.915
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.825
   RMS: 0.825
   RMS: 0.752
   RMS: 0.825
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.841
   RMS: 0.841
   RMS: 1.294
   RMS: 0.841
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.541
   RMS: 0.541
   RMS: 2.788
   RMS: 0.541
   Unrecognised keyword: pdb2f5a_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.648
   RMS: 0.648
   RMS: 3.677
   RMS: 0.648
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb2fbj_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.774
   RMS: 0.774
   RMS: 0.710
   RMS: 0.774
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.487
   RMS: 0.487
   RMS: 0.609
   RMS: 0.487
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.819
   RMS: 0.819
   RMS: 1.219
   RMS: 0.819
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.954
   RMS: 0.954
   RMS: 1.393
   RMS: 0.954
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.912
   RMS: 0.912
   RMS: 3.002
   RMS: 0.912
   Unrecognised keyword: pdb2fb4_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.780
   RMS: 0.780
   RMS: 3.984
   RMS: 0.780
   Unrecognised keyword: pdb2fbj_chothia.pdb pdb2h1p_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.706
   RMS: 0.706
   RMS: 0.770
   RMS: 0.706
   Unrecognised keyword: pdb2fbj_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.887
   RMS: 0.887
   RMS: 1.153
   RMS: 0.887
   Unrecognised keyword: pdb2fbj_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.926
   RMS: 0.926
   RMS: 1.608
   RMS: 0.926
   Unrecognised keyword: pdb2fbj_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.809
   RMS: 0.809
   RMS: 2.958
   RMS: 0.809
   Unrecognised keyword: pdb2fbj_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.776
   RMS: 0.776
   RMS: 3.990
   RMS: 0.776
   Unrecognised keyword: pdb2h1p_chothia.pdb pdb2jel_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.788
   RMS: 0.788
   RMS: 0.900
   RMS: 0.788
   Unrecognised keyword: pdb2h1p_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.858
   RMS: 0.858
   RMS: 1.105
   RMS: 0.858
   Unrecognised keyword: pdb2h1p_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.884
   RMS: 0.884
   RMS: 2.709
   RMS: 0.884
   Unrecognised keyword: pdb2h1p_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.828
   RMS: 0.828
   RMS: 3.568
   RMS: 0.828
   Unrecognised keyword: pdb2jel_chothia.pdb pdb2pcp_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.429
   RMS: 0.429
   RMS: 1.704
   RMS: 0.429
   Unrecognised keyword: pdb2jel_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.893
   RMS: 0.893
   RMS: 3.049
   RMS: 0.893
   Unrecognised keyword: pdb2jel_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.861
   RMS: 0.861
   RMS: 3.625
   RMS: 0.861
   Unrecognised keyword: pdb2pcp_chothia.pdb pdb32c2_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.891
   RMS: 0.891
   RMS: 2.337
   RMS: 0.891
   Unrecognised keyword: pdb2pcp_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.944
   RMS: 0.944
   RMS: 3.129
   RMS: 0.944
   Unrecognised keyword: pdb32c2_chothia.pdb pdb43c9_chothia.pdb
   Reading reference structure...
   Reading mobile structure...
   RMS: 0.640
   RMS: 0.640
   RMS: 1.890
   RMS: 0.640
