RosettaDesign v 2.1
  
This directory contains the files and scripts you will need to run
RosettaDesign.  Note that RosettaDesign is not the software used for design
but rather examples showing you how to do so.

Make sure to install the following packages in the same directory as you
installed RosettaDesign:
    - rosetta_source
    - rosetta_database
    - rosetta_documentation

Run setup.sh within the RosettaDesign directory to make the examples runnable.
After it is run you can see the documentation in RosettaDesign/documentation:

    - The file documentation/README.design contains directions
      for running the software and the subdirectories of 'example_'
      contain example simulations.  View the log files in these
      directories to see the command lines that were used.

    - The file documentation/README.output explains the
      information contained in the output PDB files.

    - The file documentation/README.design_tendencies describes common Rosetta
      design pathologies.

RosettaDesign can also be run through a web server: 
rosettadesign.med.unc.edu.
