Rosetta Input/Output Paths (order essential)
path is first '/', './',or  '../' to next whitespace, must end with '/'
INPUT PATHS:
native structure(required)      ../
unbound structure(optional)     ../
alternate data files(optional)  ./
fragments(not used)             ./
structure dssp (not used)       ./
sequence map(optional)          ./
constraints(optional)           ../
starting structure(required)    ../prepack/
data files(required)            ../rosetta_database/
OUTPUT PATHS:
movie                           ./
pdb path                        ./
score                           ./
status                          ./
user                            ./
FRAGMENTS: (use '*****' in place of pdb name and chain)
2                                      number of valid fragment files
3                                      frag file 1 size
aa*****03_05.200_v1_3                               name
9                                      frag file 2 size
aa*****09_05.200_v1_3                               name
