This repository is for scripts that have been of use in processing the
output/input of Rosetta runs as supplementary matierial for Rosetta++.

N.B.  Many of these scripts are not well documented and/or handle
  very specific cases, so their utility varies.  If you have a script
  you really want to use feel free to mail the appropriate Rosetta
  support address

Contents:

abinitio                Processing results of ab initio runs.
barcode                 Using barcodes.
cluster_tools           Clustering data.
DecoyStats              Process decoy statistics.
docking                 Processing results of docking runs.
domain_insertion        Prepare the required files for domain_insertion mode*
ligand                  Processing results of ligand runs.
misc                    Uncategorized supplementary scripts
PackingAnalysis         Examine packing in PDBs.
peptide_extension       Generate input files for peptide extension protocol.
resfiles                Generate interface resfiles.
seqparam                Sequence parameterizations.
vall                    Script to put together a vall from fragments.
FunHunt                 an SVM based classifier for the discrimination of 
			the near native orientation of a protein complex 
			from spurious low energy orientations. 

