     1	12:11	cd ~/bluek/ROSETTA/rosetta_scripts/
     2	12:11	ls
     3	12:11	cd ligand/
     4	12:11	vi README
     5	14:48	more addhydrogens.inp
     6	14:49	vi README
     7	14:56	mkdir example_files
     8	14:57	cp ../../docking/pdb_hetatm/2er7_hetatm.pdb example_files/
     9	14:58	cd example_files/
    10	14:58	ls
    11	14:58	more 2er7_hetatm.pdb
    12	15:00	find ../../docking/ -name 2er7.pdb
    13	15:00	find ../../docking/ -name 2er7\*
    14	15:00	find ../../docking/ -name \*2er7\*
    15	15:00	find ../../../docking/ -name 2er7.pdb
    16	15:06	ls
    17	15:07	history
    18	15:07	grep LOV 2ER7.pdb
    19	15:07	grep LOV 2ER7.pdb | grep HEATM
    20	15:07	grep LOV 2ER7.pdb | grep HETATM
    21	15:08	grep LOV 2ER7.pdb | grep HETATM > 2ER7_hetatm_start.pdb
    22	15:09	pdb2mdl.inp 2ER7_hetatm_start.pdb
    23	15:09	pdb2mdl.inp 2ER7_hetatm_start.pdb > 2ER7_hetatm.mdl
    24	15:13	cp 2ER7_hetatm.mdl 2ER7_hetatm_w_hydrogens.mdl
    25	15:14	addhydrogens.inp 2ER7_hetatm_w_hydrogens.mdl
    26	15:14	more 2ER7_hetatm_w_hydrogens.mdl
    27	15:22	pwd
    28	15:27	ls
    29	15:28	vi 2ER7_hetatm.mdl
    30	15:31	vi 2ER7_hetatm.mdl
    31	15:32	pdb2mdl.inp 2ER7_hetatm_start.pdb
    32	15:32	vi 2ER7_hetatm.mdl
    33	15:32	vi 2ER7_hetatm_w_hydrogens.mdl
    34	15:36	mdl2rosetta.inp 2ER7_hetatm_w_hydrogens.mdl
    35	15:36	mdl2rosetta.inp 2ER7_hetatm_w_hydrogens.mdl | grep HETATM
    36	15:37	mdl2rosetta.inp 2ER7_hetatm_w_hydrogens.mdl | grep HETATM > 2er7_hetam_rosetta.pdb
    37	15:38	history > ../histroy.txt
