These scripts make resfiles in the proper format for either Rosetta design
mode or for designing with Tanja's interface code. Run script with no 
arguments to see what the proper usage is.

makeResfiles.pl
# Pass in comma separated lists of residues to be designed and also (optional)
# to be repacked,or to be designed only as hphobic,charged, aromatic or polar.
# Pass in the pdbfile
# Specify rosetta or interface type resfile to be made
# Optionally give a name for the ourput resfile or will write to STDOUT
# Outputs a resfile in the appropriate format

makeAllPointSubs.pl
# Makes a resfile for all 19 amino acids (no CYS) at the specified design
# residue
# Pass in the residue to be designed
# Optional: pass in a file with comma separated residues for repacking
# Optional: pass in a file with comma separated one-letter amino acids
# (these are the only substitution that will then be made) 
# Pass in the pdb file
# Specify rosetta or interface type resfile to be made
