core::scoring::rna::RNA_FullAtomVDW_BasePhosphate Member List

This is the complete list of members for core::scoring::rna::RNA_FullAtomVDW_BasePhosphate, including all inherited members.

clone() const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
ContextIndependentOneBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::ContextIndependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &p) const	core::scoring::methods::OneBodyEnergy	virtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
defines_score_for_residue(conformation::Residue const &) const	core::scoring::methods::OneBodyEnergy	virtual
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)	core::scoring::methods::EnergyMethod
etable_	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	private
etable_energy_	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	private
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
core::scoring::methods::ContextIndependentOneBodyEnergy::eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const	core::scoring::methods::OneBodyEnergy	virtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const	core::scoring::methods::OneBodyEnergy	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &sfxn, EnergyMap &total_energy) const	core::scoring::methods::EnergyMethod	virtual
indicate_required_context_graphs(utility::vector1< bool > &) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	privatevirtual
method_type() const	core::scoring::methods::ContextIndependentOneBodyEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
OneBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::OneBodyEnergy
parent typedef	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const	core::scoring::methods::OneBodyEnergy	virtual
requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) const	core::scoring::methods::OneBodyEnergy	virtual
residue_energy(conformation::Residue const &rsd, EnergyMap &emap) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
residue_energy(conformation::Residue const &rsd, pose::Pose const &, EnergyMap &emap) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) const	core::scoring::methods::OneBodyEnergy	virtual
residue_fast_pair_energy_attached_H(core::conformation::Residue const &res1, int const atomno1, core::conformation::Residue const &res2, Size const atomno2, Size const at1hbegin, Size const at1hend, Size const at2hbegin, Size const at2hend, EnergyMap &emap) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
RNA_FullAtomVDW_BasePhosphate(etable::TableLookupEtableEnergy const &etable_energy_in, etable::Etable const &etable_in)	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, scoring::ScoreFunction const &) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const	core::scoring::methods::OneBodyEnergy	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, ResSingleMinimizationData &) const	core::scoring::methods::OneBodyEnergy	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &pose, scoring::ScoreFunction const &) const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const	core::scoring::methods::OneBodyEnergy	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
use_extended_residue_energy_interface() const	core::scoring::methods::OneBodyEnergy	virtual
version() const	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	privatevirtual
~EnergyMethod()	core::scoring::methods::EnergyMethod	virtual
~OneBodyEnergy()	core::scoring::methods::OneBodyEnergy	virtual
~RNA_FullAtomVDW_BasePhosphate()	core::scoring::rna::RNA_FullAtomVDW_BasePhosphate	virtual