| atom(core::Size const ) const | core::scoring::constraints::SequenceProfileConstraint | inlinevirtual |
| AtomID typedef | core::scoring::constraints::Constraint | |
| choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | inlinevirtual |
| clone() const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| core::scoring::constraints::Constraint::clone(core::scoring::func::FuncOP) const | core::scoring::constraints::Constraint | inlinevirtual |
| Conformation typedef | core::scoring::constraints::SequenceProfileConstraint | |
| Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | inline |
| ConstraintOP typedef | core::scoring::constraints::SequenceProfileConstraint | |
| dist(core::pose::Pose const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| dist(core::scoring::func::XYZ_Func const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| EnergyMap typedef | core::scoring::constraints::SequenceProfileConstraint | |
| fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| FuncFactory typedef | core::scoring::constraints::SequenceProfileConstraint | |
| get_func() const | core::scoring::constraints::Constraint | inlinevirtual |
| mapping_ | core::scoring::constraints::SequenceProfileConstraint | private |
| natoms() const | core::scoring::constraints::SequenceProfileConstraint | inlinevirtual |
| operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | inline |
| operator==(Constraint const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| Pose typedef | core::scoring::constraints::SequenceProfileConstraint | |
| profile_mapping() const | core::scoring::constraints::SequenceProfileConstraint | |
| read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_data(std::istream &) | core::scoring::constraints::Constraint | inlinevirtual |
| read_def(std::istream &, Pose const &, func::FuncFactory const &) | core::scoring::constraints::SequenceProfileConstraint | virtual |
| remap_resid(SequenceMapping const &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| residues() const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| core::scoring::constraints::Constraint::score(conformation::Conformation const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| score_type() const | core::scoring::constraints::Constraint | inline |
| seqpos() const | core::scoring::constraints::SequenceProfileConstraint | inline |
| seqpos(core::Size seqpos) | core::scoring::constraints::SequenceProfileConstraint | inline |
| seqpos_ | core::scoring::constraints::SequenceProfileConstraint | private |
| sequence_profile() const | core::scoring::constraints::SequenceProfileConstraint | |
| sequence_profile_ | core::scoring::constraints::SequenceProfileConstraint | private |
| SequenceMapping typedef | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfile typedef | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint() | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint(Pose const &, core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint(core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileCOP typedef | core::scoring::constraints::SequenceProfileConstraint | |
| set_sequence_profile(SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | inlinevirtual |
| show(std::ostream &out) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| show_def(std::ostream &, Pose const &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const | core::scoring::constraints::Constraint | virtual |
| steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | inlinevirtual |
| to_string() const | core::scoring::constraints::Constraint | inline |
| type() const | core::scoring::constraints::SequenceProfileConstraint | inlinevirtual |
| weight(core::Real const w) | core::scoring::constraints::SequenceProfileConstraint | |
| weight() const | core::scoring::constraints::SequenceProfileConstraint | |
| weight_ | core::scoring::constraints::SequenceProfileConstraint | private |
| XYZ_Func typedef | core::scoring::constraints::SequenceProfileConstraint | |
| ~Constraint() | core::scoring::constraints::Constraint | virtual |
| ~SequenceProfileConstraint() | core::scoring::constraints::SequenceProfileConstraint | virtual |
1.8.7