core::pack::rotamer_set::RotamerSubsets Class Reference

#include <RotamerSubsets.hh>

Public Types
typedef task::PackerTaskCOP	PackerTaskCOP
Public Types inherited from core::pack::rotamer_set::FixbbRotamerSets
typedef RotamerSetsBase	parent
typedef utility::vector1 < RotamerSetOP >	RotamerSetVector

Public Member Functions
	RotamerSubsets (FixbbRotamerSets &source, utility::vector0< int > const &rotamer_subset)
	~RotamerSubsets ()
virtual uint	nrotamers () const
virtual uint	nrotamers_for_moltenres (uint) const
virtual uint	total_residue () const
virtual uint	nmoltenres () const
virtual uint	moltenres_2_resid (uint) const
virtual uint	resid_2_moltenres (uint) const
virtual uint	moltenres_for_rotamer (uint) const
virtual uint	res_for_rotamer (uint) const
virtual core::conformation::ResidueCOP	rotamer (uint) const
virtual core::conformation::ResidueCOP	rotamer_for_moltenres (uint moltenres_id, uint rotamerid) const
virtual uint	nrotamer_offset_for_moltenres (uint) const
virtual RotamerSetCOP	rotamer_set_for_residue (uint resid) const
virtual RotamerSetOP	rotamer_set_for_residue (uint resid)
virtual RotamerSetCOP	rotamer_set_for_moltenresidue (uint moltenresid) const
virtual RotamerSetOP	rotamer_set_for_moltenresidue (uint moltenresid)
RotamerSetVector::const_iterator	begin ()
RotamerSetVector::const_iterator	end ()
virtual uint	rotid_on_moltenresidue (uint rotid) const
	convert rotid in full rotamer enumeration into rotamer id on its source residue More...
virtual uint	moltenres_rotid_2_rotid (uint moltenres, uint moltenresrotid) const
	convert moltenres rotid to id in full rotamer enumeration More...
Public Member Functions inherited from core::pack::rotamer_set::FixbbRotamerSets
	FixbbRotamerSets ()
virtual	~FixbbRotamerSets ()
Public Member Functions inherited from core::pack::rotamer_set::RotamerSetsBase
	RotamerSetsBase ()
virtual	~RotamerSetsBase ()

Protected Member Functions
virtual utility::vector1< uint > const &	resid_2_moltenres_vector () const
virtual utility::vector1< uint > const &	moltenres_2_resid_vector () const

Private Member Functions
void	update_offset_data ()

Private Attributes
uint	nmoltenres_
uint	total_residue_
uint	nrotamers_
RotamerSetVector	set_of_rotamer_sets_
utility::vector1< uint >	resid_2_moltenres_
utility::vector1< uint >	moltenres_2_resid_
utility::vector1< uint >	nrotamer_offsets_
utility::vector1< uint >	moltenres_for_rotamer_
utility::vector1< uint >	nrotamers_for_moltenres_

Member Typedef Documentation

typedef task::PackerTaskCOP core::pack::rotamer_set::RotamerSubsets::PackerTaskCOP

Constructor & Destructor Documentation

core::pack::rotamer_set::RotamerSubsets::RotamerSubsets	(	FixbbRotamerSets &	source,
		utility::vector0< int > const &	rotamer_subset
	)

References core::pack::rotamer_set::RotamerSetsBase::moltenres_for_rotamer(), moltenres_for_rotamer_, nmoltenres_, nrotamer_offsets_, nrotamers_for_moltenres_, core::pack::rotamer_set::FixbbRotamerSets::rotamer_set_for_moltenresidue(), core::pack::rotamer_set::RotamerSetsBase::rotid_on_moltenresidue(), and set_of_rotamer_sets_.

core::pack::rotamer_set::RotamerSubsets::~RotamerSubsets

(

)

Member Function Documentation

RotamerSetVector::const_iterator core::pack::rotamer_set::RotamerSubsets::begin ( )

inlinevirtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References set_of_rotamer_sets_.

RotamerSetVector::const_iterator core::pack::rotamer_set::RotamerSubsets::end ( )

inlinevirtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References set_of_rotamer_sets_.

uint core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid ( uint  mresid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References moltenres_2_resid_.

Referenced by res_for_rotamer().

virtual utility::vector1< uint > const& core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid_vector ( ) const

inlineprotectedvirtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References moltenres_2_resid_.

uint core::pack::rotamer_set::RotamerSubsets::moltenres_for_rotamer ( uint  rotid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References moltenres_for_rotamer_.

Referenced by res_for_rotamer().

uint core::pack::rotamer_set::RotamerSubsets::moltenres_rotid_2_rotid ( uint  moltenres, uint  moltenresrotid  ) const

virtual

convert moltenres rotid to id in full rotamer enumeration

Implements core::pack::rotamer_set::RotamerSetsBase.

References nrotamer_offsets_.

uint core::pack::rotamer_set::RotamerSubsets::nmoltenres ( ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References nmoltenres_.

uint core::pack::rotamer_set::RotamerSubsets::nrotamer_offset_for_moltenres ( uint  mresid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References nrotamer_offsets_.

uint core::pack::rotamer_set::RotamerSubsets::nrotamers ( ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References nrotamers_.

uint core::pack::rotamer_set::RotamerSubsets::nrotamers_for_moltenres ( uint  mresid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References rotamer_set_for_moltenresidue().

uint core::pack::rotamer_set::RotamerSubsets::res_for_rotamer ( uint  rotid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References moltenres_2_resid(), and moltenres_for_rotamer().

Referenced by rotamer().

uint core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres ( uint  resid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References resid_2_moltenres_.

Referenced by rotamer_set_for_residue().

virtual utility::vector1< uint > const& core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres_vector ( ) const

inlineprotectedvirtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References resid_2_moltenres_.

core::conformation::ResidueCOP core::pack::rotamer_set::RotamerSubsets::rotamer ( uint  rotid ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References res_for_rotamer(), rotamer_set_for_residue(), and rotid_on_moltenresidue().

core::conformation::ResidueCOP core::pack::rotamer_set::RotamerSubsets::rotamer_for_moltenres ( uint  moltenres_id, uint  rotamerid  ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References rotamer_set_for_residue().

RotamerSetCOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_moltenresidue ( uint  moltenresid ) const

virtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References set_of_rotamer_sets_.

Referenced by nrotamers_for_moltenres().

RotamerSetOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_moltenresidue ( uint  moltenresid )

virtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References set_of_rotamer_sets_.

RotamerSetCOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_residue ( uint  resid ) const

virtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References resid_2_moltenres(), and set_of_rotamer_sets_.

Referenced by rotamer(), and rotamer_for_moltenres().

RotamerSetOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_residue ( uint  resid )

virtual

Implements core::pack::rotamer_set::FixbbRotamerSets.

References resid_2_moltenres(), and set_of_rotamer_sets_.

uint core::pack::rotamer_set::RotamerSubsets::rotid_on_moltenresidue ( uint  rotid ) const

virtual

convert rotid in full rotamer enumeration into rotamer id on its source residue

Implements core::pack::rotamer_set::RotamerSetsBase.

References moltenres_for_rotamer_, and nrotamer_offsets_.

Referenced by rotamer().

uint core::pack::rotamer_set::RotamerSubsets::total_residue ( ) const

virtual

Implements core::pack::rotamer_set::RotamerSetsBase.

References total_residue_.

void core::pack::rotamer_set::RotamerSubsets::update_offset_data ( )

private

References moltenres_for_rotamer_, nmoltenres_, nrotamer_offsets_, nrotamers_, nrotamers_for_moltenres_, and set_of_rotamer_sets_.

Member Data Documentation

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid_

private

Referenced by moltenres_2_resid(), and moltenres_2_resid_vector().

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::moltenres_for_rotamer_

private

Referenced by moltenres_for_rotamer(), RotamerSubsets(), rotid_on_moltenresidue(), and update_offset_data().

uint core::pack::rotamer_set::RotamerSubsets::nmoltenres_

private

Referenced by nmoltenres(), RotamerSubsets(), and update_offset_data().

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::nrotamer_offsets_

private

Referenced by moltenres_rotid_2_rotid(), nrotamer_offset_for_moltenres(), RotamerSubsets(), rotid_on_moltenresidue(), and update_offset_data().

uint core::pack::rotamer_set::RotamerSubsets::nrotamers_

private

Referenced by nrotamers(), and update_offset_data().

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::nrotamers_for_moltenres_

private

Referenced by RotamerSubsets(), and update_offset_data().

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres_

private

Referenced by resid_2_moltenres(), and resid_2_moltenres_vector().

RotamerSetVector core::pack::rotamer_set::RotamerSubsets::set_of_rotamer_sets_

private

Referenced by begin(), end(), rotamer_set_for_moltenresidue(), rotamer_set_for_residue(), RotamerSubsets(), and update_offset_data().

uint core::pack::rotamer_set::RotamerSubsets::total_residue_

private

Referenced by total_residue().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/pack/rotamer_set/RotamerSubsets.hh
• symlinks/rosetta/src/core/pack/rotamer_set/RotamerSubsets.cc