core::pack::task::operation::OperateOnCertainResidues Class Reference

#include <OperateOnCertainResidues.hh>

Public Types
typedef TaskOperation	parent
typedef utility::tag::TagCOP	TagCOP
typedef pose::Pose	Pose
typedef utility::vector1< Size >	ResidueIndices
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	OperateOnCertainResidues ()
	OperateOnCertainResidues (ResLvlTaskOperationOP, ResFilterOP)
	OperateOnCertainResidues (OperateOnCertainResidues const &)
OperateOnCertainResidues &	operator= (OperateOnCertainResidues const &)
virtual	~OperateOnCertainResidues ()
virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (Pose const &, PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	residue_indices (ResidueIndices const &)
	supports direct limitation of residues to be affected, without the need for a filter More...
ResidueIndices &	residue_indices ()
ResidueIndices const &	residue_indices () const
void	op (ResLvlTaskOperationCOP)
	sets the ResLvlTaskOperation that will be applied to residues More...
void	filter (ResFilterCOP)
	sets an optional filter that is applied to each individual residue More...
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
ResidueIndices	residue_indices_
ResLvlTaskOperationOP	op_
ResFilterOP	filter_

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::OperateOnCertainResidues::parent

typedef pose::Pose core::pack::task::operation::OperateOnCertainResidues::Pose

typedef utility::vector1< Size > core::pack::task::operation::OperateOnCertainResidues::ResidueIndices

typedef utility::tag::TagCOP core::pack::task::operation::OperateOnCertainResidues::TagCOP

Constructor & Destructor Documentation

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues

(

)

Referenced by clone().

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues	(	ResLvlTaskOperationOP	rlto,
		ResFilterOP	filter
	)

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues

(

OperateOnCertainResidues const &

src

)

core::pack::task::operation::OperateOnCertainResidues::~OperateOnCertainResidues ( )

virtual

Member Function Documentation

void core::pack::task::operation::OperateOnCertainResidues::apply ( Pose const &  , PackerTask &    ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::sequence::end, filter_, core::pack::task::PackerTask::nonconst_residue_task(), nres, op_, residue_indices_, runtime_assert, core::pack::task::PackerTask::total_residue(), and core::pose::Pose::total_residue().

TaskOperationOP core::pack::task::operation::OperateOnCertainResidues::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

References OperateOnCertainResidues().

void core::pack::task::operation::OperateOnCertainResidues::filter

(

ResFilterCOP

filter_in

)

sets an optional filter that is applied to each individual residue

References filter_, and runtime_assert.

void core::pack::task::operation::OperateOnCertainResidues::op

(

ResLvlTaskOperationCOP

op_in

)

sets the ResLvlTaskOperation that will be applied to residues

References op_, and runtime_assert.

OperateOnCertainResidues & core::pack::task::operation::OperateOnCertainResidues::operator=

(

OperateOnCertainResidues const &

src

)

References filter_, op_, residue_indices(), and residue_indices_.

void core::pack::task::operation::OperateOnCertainResidues::parse_tag ( TagCOP  tag, DataMap &    )

virtual

Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter.

tag parsing for factory construction of this class and its children

Example Tag syntax for parser as of Summer 2009

<OperateOnCertainResidues name="PROTEINnopack"> <PreventRepackingRLT> <ResidueHasProperty property="PROTEIN/"> </OperateOnCertainResidues>

Reimplemented from core::pack::task::operation::TaskOperation.

References core::sequence::end, filter_, core::pack::task::operation::ResFilterFactory::get_instance(), core::pack::task::operation::ResLvlTaskOperationFactory::get_instance(), core::pack::task::operation::ResFilterFactory::has_type(), core::pack::task::operation::ResFilterFactory::newResFilter(), op_, t_debug, core::pack::task::operation::TR, type, and utility_exit_with_message.

void core::pack::task::operation::OperateOnCertainResidues::residue_indices

(

ResidueIndices const &

)

supports direct limitation of residues to be affected, without the need for a filter

Referenced by operator=().

ResidueIndices& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( )

inline

References residue_indices_.

ResidueIndices const& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( ) const

inline

References residue_indices_.

Member Data Documentation

ResFilterOP core::pack::task::operation::OperateOnCertainResidues::filter_

private

Referenced by apply(), filter(), operator=(), and parse_tag().

ResLvlTaskOperationOP core::pack::task::operation::OperateOnCertainResidues::op_

private

Referenced by apply(), op(), operator=(), and parse_tag().

ResidueIndices core::pack::task::operation::OperateOnCertainResidues::residue_indices_

private

Referenced by apply(), operator=(), and residue_indices().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/pack/task/operation/OperateOnCertainResidues.hh
• symlinks/rosetta/src/core/pack/task/operation/OperateOnCertainResidues.cc