 |
Rosetta Core
2014.16.56682
|
|
Rosetta Core
2014.16.56682
|
Classes | |
| class | AmberPeriodicFunc |
| function of type y = 0.5 * k * (1 - cos(n * (x - x0) ) ) More... | |
| class | CharmmPeriodicFunc |
| function of type y = 0.5 * k * (1 - cos(n * (x - x0) ) ) More... | |
| class | CircularGeneral1D_Func |
| Function that allows return of arbitrary FArrays – this time circularized. More... | |
| class | CircularHarmonicFunc |
| Function that operates in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints. More... | |
| class | CircularPowerFunc |
| Generalization of CircularCircularPowerFunc – other exponents allowed. More... | |
| class | CircularSigmoidalFunc |
| Function that operates in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints. More... | |
| class | ConformationXYZ |
| class | ConstantFunc |
| Derived class of class Func representing a Constant distribution with a user-specified mean and standard deviation. More... | |
| class | CountViolFunc |
| class | EtableFunc |
| Class for representing arbitrarily defined functions. More... | |
| class | FadeFunc |
| class | FlatHarmonicFunc |
| class | FourPointsFunc |
| A simple class that represents the coordinates of four points, pretending that they all belong to residue 1. The residue() method is not implemented and cause a utility_exit. More... | |
| class | Func |
| Func is an abstract base class representing a function used to define constraints, in which func(r) gives the constraint score for the given value r. More... | |
| class | FuncFactory |
| class | GaussianChainDoubleFunc |
| class | GaussianChainFunc |
| class | GaussianChainQuadrupleFunc |
| class | GaussianChainSingleFunc |
| class | GaussianChainTripleFunc |
| class | GaussianFunc |
| Derived class of class Func representing a Gaussian distribution with a user-specified mean and standard deviation. More... | |
| class | HarmonicFunc |
| class | IdentityFunc |
| class | KarplusFunc |
| Function that evaluates a J-coupling from dihedral angles in radians, for applications like DihedralConstraint. Prevents discontinuities at 0/360 or -180/180 degrees for dihedral constraints. More... | |
| class | LinearPenaltyFunction |
| class | MinMultiHarmonicFunc |
| class | MixtureFunc |
| Derived class of class Func representing a Mixture of several distinct functions. The function is of the form ln( g(r) / h(r) ), where g(r) is a mixture of a Gaussian and Exponential distributions, and h(r) is a Gaussian distribution. See methods and implementation for more information. More... | |
| class | PeriodicFunc |
| function of type y = ( k * cos(n * (x - x0) ) ) + C More... | |
| class | ResiduePairXYZ |
| class | ResidueXYZ |
| class | ScalarWeightedFunc |
| class | SigmoidFunc |
| class | SkipViolFunc |
| class | SoedingFunc |
| Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation. More... | |
| class | SOGFunc |
| Derived class of class Func representing a SOG distribution with a user-specified mean and standard deviation. More... | |
| class | SOGFunc_Impl |
| Derived class of class Func representing a SOG distribution with a user-specified mean and standard deviation. More... | |
| class | SplineFunc |
| class | SquareWell2Func |
| class | SquareWellFunc |
| class | SumFunc |
| class | TopOutFunc |
| class | USOGFunc |
| Unnormalized, unbounded sum of Gaussians constraint. More... | |
| class | XYZ_Func |
| just a simple class that takes an AtomID and returns a Vector (position) More... | |
Functions | |
| std::ostream & | operator<< (std::ostream &out, const Func &f) |
| Real | L (Real const &x) |
| core::Real | readValueOrDie (std::istream &in) |
| Reads and returns a single floating point value from the specified input stream, aborting if either the failbit or badbit is flipped. More... | |
Variables | |
| static basic::Tracer | trMinMultiHarmonicFunc ("fragment.picking.scores.MinMultiHarmonicFunc") |
| typedef utility::pointer::owning_ptr< AmberPeriodicFunc const > core::scoring::func::AmberPeriodicFuncCOP |
| typedef utility::pointer::owning_ptr< CircularGeneral1D_Func const > core::scoring::func::CircularGeneral1D_FuncCOP |
| typedef utility::pointer::owning_ptr< CircularGeneral1D_Func > core::scoring::func::CircularGeneral1D_FuncOP |
| typedef utility::pointer::owning_ptr< CircularHarmonicFunc const > core::scoring::func::CircularHarmonicFuncCOP |
| typedef utility::pointer::owning_ptr< CircularHarmonicFunc > core::scoring::func::CircularHarmonicFuncOP |
| typedef utility::pointer::owning_ptr< CircularPowerFunc const > core::scoring::func::CircularPowerFuncCOP |
| typedef utility::pointer::owning_ptr< CircularSigmoidalFunc const > core::scoring::func::CircularSigmoidalFuncCOP |
| typedef utility::pointer::owning_ptr< CircularSigmoidalFunc > core::scoring::func::CircularSigmoidalFuncOP |
| typedef utility::pointer::owning_ptr< FlatHarmonicFunc const > core::scoring::func::FlatHarmonicFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainDoubleFunc const > core::scoring::func::GaussianChainDoubleFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainDoubleFunc > core::scoring::func::GaussianChainDoubleFuncOP |
| typedef utility::pointer::owning_ptr< GaussianChainFunc const > core::scoring::func::GaussianChainFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainQuadrupleFunc const > core::scoring::func::GaussianChainQuadrupleFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainQuadrupleFunc > core::scoring::func::GaussianChainQuadrupleFuncOP |
| typedef utility::pointer::owning_ptr< GaussianChainSingleFunc const > core::scoring::func::GaussianChainSingleFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainSingleFunc > core::scoring::func::GaussianChainSingleFuncOP |
| typedef utility::pointer::owning_ptr< GaussianChainTripleFunc const > core::scoring::func::GaussianChainTripleFuncCOP |
| typedef utility::pointer::owning_ptr< GaussianChainTripleFunc > core::scoring::func::GaussianChainTripleFuncOP |
| typedef utility::pointer::owning_ptr< MinMultiHarmonicFunc const > core::scoring::func::MinMultiHarmonicFuncCOP |
| typedef utility::pointer::owning_ptr< MinMultiHarmonicFunc > core::scoring::func::MinMultiHarmonicFuncOP |
| typedef utility::pointer::owning_ptr< ScalarWeightedFunc const > core::scoring::func::ScalarWeightedFuncCOP |
| typedef utility::pointer::owning_ptr< ScalarWeightedFunc > core::scoring::func::ScalarWeightedFuncOP |
| typedef utility::pointer::owning_ptr< SquareWell2Func const > core::scoring::func::SquareWell2FuncCOP |
References pi.
Referenced by core::scoring::electron_density::SplineInterp::compute_coefficients3(), core::scoring::electron_density::SplineInterp::compute_coefficients4(), core::scoring::electron_density::SplineInterp::ConvertToInterpolationCoefficients(), core::scoring::func::GaussianChainQuadrupleFunc::dfunc(), core::scoring::hbonds::fade_energy(), core::scoring::func::GaussianChainQuadrupleFunc::func(), core::scoring::electron_density::ElectronDensity::getIntensities(), core::scoring::electron_density::ElectronDensity::getIntensitiesMasked(), core::scoring::electron_density::ElectronDensity::getMapMapError(), core::scoring::electron_density::ElectronDensity::getModelMapError(), core::scoring::electron_density::ElectronDensity::getResolutionBins(), core::scoring::electron_density::SplineInterp::grad3(), core::scoring::electron_density::SplineInterp::grad4(), core::scoring::electron_density::SplineInterp::InitialAntiCausalCoefficient(), core::scoring::electron_density::SplineInterp::InitialCausalCoefficient(), core::scoring::electron_density::SplineInterp::interp3(), core::scoring::electron_density::SplineInterp::interp4(), core::scoring::electron_density::ElectronDensity::readMRCandResize(), core::scoring::electron_density::ElectronDensity::scaleIntensities(), and core::scoring::electron_density::ElectronDensity::setup_patterson_first_time().
| std::ostream& core::scoring::func::operator<< | ( | std::ostream & | out, |
| const Func & | f | ||
| ) |
References core::scoring::func::Func::show().
| core::Real core::scoring::func::readValueOrDie | ( | std::istream & | in | ) |
Reads and returns a single floating point value from the specified input stream, aborting if either the failbit or badbit is flipped.
References utility_exit_with_message.
Referenced by core::scoring::func::USOGFunc::read_data().
|
static |
Referenced by core::scoring::func::MinMultiHarmonicFunc::read_data().
1.8.7