#include <ExtendAlignerSW.hh>

Public Member Functions
	ExtendAlignerSW ()
	ctor More...

virtual	~ExtendAlignerSW ()
	dtor More...

virtual SequenceAlignment	align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)

Public Member Functions inherited from core::sequence::Aligner
	Aligner ()
	ctor More...

virtual	~Aligner ()
	dtor More...

void	validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)

SequenceAlignment	traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)

Constructor & Destructor Documentation

core::sequence::ExtendAlignerSW::ExtendAlignerSW ( )

inline

ctor

virtual core::sequence::ExtendAlignerSW::~ExtendAlignerSW ( )

inlinevirtual

dtor

Member Function Documentation

virtual SequenceAlignment core::sequence::ExtendAlignerSW::align	(	SequenceOP	seq_y,
		SequenceOP	seq_x,
		ScoringSchemeOP	ss
	)

virtual

The documentation for this class was generated from the following file: