EmbeddingFactory.cc File Reference

Factory Method for creating a membrane embedding from user options and tags. More...

#include <core/membrane/geometry/EmbeddingFactory.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/membrane/geometry/util.hh>
#include <core/conformation/membrane/definitions.hh>
#include <core/conformation/membrane/Exceptions.hh>
#include <core/membrane/geometry/MembraneResidueFactory.hh>
#include <basic/resource_manager/ResourceManager.hh>
#include <basic/resource_manager/util.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray3D.hh>
#include <ObjexxFCL/FArray4D.hh>
#include <basic/Tracer.hh>
#include <basic/prof.hh>
#include <numeric/xyzVector.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <cmath>
#include <algorithm>
#include <cstdlib>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::membrane
	core::membrane::geometry

Macros
#define	INCLUDED_core_membrane_geometry_EmbeddingFactory_cc

Variables
static basic::Tracer	TR ("core.membrane.geometry.EmbeddingFactory")

Detailed Description

Factory Method for creating a membrane embedding from user options and tags.

Creates reference center, normal, depth/spanning definition and topology definition from the user's specifications

Author

Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Macro Definition Documentation

#define INCLUDED_core_membrane_geometry_EmbeddingFactory_cc

Variable Documentation

basic::Tracer TR("core.membrane.geometry.EmbeddingFactory")

static

Referenced by core::membrane::geometry::EmbeddingFactory::create_and_add_embedding(), core::membrane::geometry::EmbeddingFactory::embed_from_pdb(), core::membrane::geometry::EmbeddingFactory::embed_from_search_and_score(), and core::membrane::geometry::EmbeddingFactory::embed_from_topology().