core::init Namespace Reference

Classes
struct	pre_talaris_2013_behavior_settings

Functions
void	init_mpi (int, char **)
void	init_options (int argc, char *argv[])
	Initialize the option system, which manages command line options. More...
void	init_tracers ()
	Tracers control output to std::cout and std::cerr. More...
void	init_source_revision ()
	Choose to output source version control information? More...
void	init_paths ()
	Setup basic search paths. More...
void	check_deprecated_flags ()
	Check for deprecated flags specified by the user and output error messages if necessary. More...
void	report_application_command (int argc, char *argv[])
	Describe the application execution command. More...
void	init_random_number_generators ()
	Initalize random number generators. More...
void	init_random_generators (int const start_seed, RND_RunType run_type, std::string const &RGtype)
	Initialize random generator systems (and send debug io to tracer with seed/mode info). More...
void	random_delay ()
	Choose to randomly delay execution to desyncronize parallel execution. More...
void	locate_rosetta_database ()
	Locate rosetta_database. More...
void	init_profiling ()
	Profiling measures execution performance. More...
void	init (int argc, char *argv[])
	Init basic core systems: options system, random system. More...
void	init (utility::vector1< std::string > const &args)
	wrapper for core system Init More...
void	init_mpi (int argc, char *argv[])
	Initialize MPI (message passing interface) for parallel applications. More...
void	init_revert_to_pre_talaris_2013_mistake ()
	Initialize the "revert to before Talaris2013" mistake. More...
void	revert_to_pre_talaris_2013_defaults ()
	Reset a set of flags to their pre-talaris behavior. More...
void	init_hbond_sp2_correction ()
	Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default. More...
void	init_facts_correction ()
	Initialize the FACTS correction. More...
void	init_correct_correction ()
	Initialize the -correct correction. More...
void	init_crystal_refinement_correction ()
	Initialize the crystal refinement correction. More...
void	init_beta_correction ()
	Initialize the -beta score function. More...
void	init_nonideal_correction ()
	Initialize nonideal bond geometry correction. More...
void	init_restore_score12prime ()
	restore the the score function to the Score12prime version More...
void	init_score_function_corrections ()
	Initialize the latest and greatest score function parameters. More...
void	check_score_function_sanity (std::string const &scorefxn_key, bool warn_only=false)
	Check if a score function is requested with incompatible option flags. More...

Variables
static EnergyMethodRegistrator < scoring::constraints::ConstraintsEnergyCreator >	ConstraintsEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::disulfides::CentroidDisulfideEnergyCreator >	CentroidDisulfideEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::disulfides::DisulfideMatchingEnergyCreator >	DisulfideMatchingEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::disulfides::FullatomDisulfideEnergyCreator >	FullatomDisulfideEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::etable::EtableEnergyCreator >	EtableEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::hbonds::HBondEnergyCreator >	HBondEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ChainbreakEnergyCreator >	ChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CenPairEnergyCreator >	CenPairEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ContactOrderEnergyCreator >	ContactOrderEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::IntermolEnergyCreator >	IntermolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MissingEnergyCreator >	MissingEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::EnvEnergyCreator >	EnvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::EnvSmoothEnergyCreator >	EnvSmoothEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::OmegaTetherEnergyCreator >	OmegaTetherEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::OtherPoseEnergyCreator >	OtherPoseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::NMerRefEnergyCreator >	NMerRefEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::NMerPSSMEnergyCreator >	NMerPSSMEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::NMerSVMEnergyCreator >	NMerSVMEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::P_AA_EnergyCreator >	P_AA_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::P_AA_pp_EnergyCreator >	P_AA_pp_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::PackStatEnergyCreator >	PackStatEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::PairEnergyCreator >	PairEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::PeptideBondEnergyCreator >	PeptideBondEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ProClosureEnergyCreator >	ProClosureEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::BurialEnergyCreator >	BurialCreator_registrator
static EnergyMethodRegistrator < scoring::methods::RG_Energy_FastCreator >	RG_Energy_FastCreator_registrator
static EnergyMethodRegistrator < scoring::methods::RG_LocalEnergyCreator >	RG_LocalEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SA_EnergyCreator >	SA_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::D2H_SA_EnergyCreator >	D2H_SA_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ProQ_EnergyCreator >	ProQ_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::RMS_EnergyCreator >	RMS_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::Rama2BOffsetEnergyCreator >	Ramac2BOffsetEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::RamachandranEnergy2BCreator >	RamachandranEnergy2BCreator_registrator
static EnergyMethodRegistrator < scoring::methods::RamachandranEnergyCreator >	RamachandranEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ReferenceEnergyCreator >	ReferenceEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ReferenceEnergyNoncanonicalCreator >	ReferenceEnergyNoncanonicalCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SecondaryStructureEnergyCreator >	SecondaryStructureEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::dfire::DFIRE_EnergyCreator >	DFIRE_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::vdwaals::VDW_EnergyCreator >	VDW_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::GoapEnergyCreator >	GoapEnergyCreator_registrator
static EnergyMethodRegistrator < pack::dunbrack::DunbrackEnergyCreator >	DunbrackEnergyCreator_registrator
static EnergyMethodRegistrator < pack::dunbrack::cenrot::CenRotDunEnergyCreator >	CenRotDunEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::nv::NVscoreCreator >	NVscoreCreator_registrator
static EnergyMethodRegistrator < scoring::orbitals::OrbitalsScoreCreator >	OrbitalsScoreCreator_registrator
static EnergyMethodRegistrator < scoring::interface_::DDPscoreCreator >	DDPscoreCreator_registrator
static EnergyMethodRegistrator < scoring::carbon_hbonds::CarbonHBondEnergyCreator >	CarbonHBondEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator >	FullatomCustomPairDistanceEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CustomAtomPairEnergyCreator >	CustomAtomPairEnergy_registrator
static EnergyMethodRegistrator < scoring::electron_density::FastDensEnergyCreator >	FastDensEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::electron_density::ElecDensCenEnergyCreator >	ElecDensCenEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::electron_density::ElecDensAllAtomCenEnergyCreator >	ElecDensAllAtomCenEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::electron_density::ElecDensEnergyCreator >	ElecDensEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::electron_density::PattersonCorrEnergyCreator >	PattersonCorrEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::cryst::XtalMLEnergyCreator >	XtalMLEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::electron_density_atomwise::ElecDensAtomwiseEnergyCreator >	ElecDensAtomwiseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::geometric_solvation::ExactOccludedHbondSolEnergyCreator >	ExactOccludedHbondSolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::geometric_solvation::GeometricSolEnergyCreator >	GeometricSolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::geometric_solvation::ContextIndependentGeometricSolEnergyCreator >	ContextIndependentGeometricSolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::geometric_solvation::OccludedHbondSolEnergyCreator >	OccludedHbondSolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::geometric_solvation::OccludedHbondSolEnergy_onebodyCreator >	OccludedHbondSolEnergy_onebodyCreator_registrator
static EnergyMethodRegistrator < scoring::elec::FA_ElecEnergyCreator >	FA_ElecEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::elec::RNA_FA_ElecEnergyCreator >	RNA_FA_ElecEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::elec::FA_ElecEnergyAroAroCreator >	FA_ElecEnergyAroAroCreator_registrator
static EnergyMethodRegistrator < scoring::elec::FA_ElecEnergyAroAllCreator >	FA_ElecEnergyAroAllCreator_registrator
static EnergyMethodRegistrator < scoring::hackaro::HackAroEnergyCreator >	HackAroEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::dna::DNAChiEnergyCreator >	DNAChiEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::dna::DNATorsionEnergyCreator >	DNATorsionEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::loop_graph::LoopCloseEnergyCreator >	LoopCloseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::DNA_BaseEnergyCreator >	DNA_BaseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::DirectReadoutEnergyCreator >	DirectReadoutEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::DistanceChainbreakEnergyCreator >	DistanceChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::Fa_MbenvEnergyCreator >	Fa_MbenvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::Fa_MbsolvEnergyCreator >	Fa_MbsolvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::FreeMoietyEnergyCreator >	FreeMoietyEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::GenBornEnergyCreator >	GenBornEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::FACTSEnergyCreator >	FACTSEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::HybridVDW_EnergyCreator >	HybridVDW_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::LK_PolarNonPolarEnergyCreator >	LK_PolarNonPolarEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::LK_hackCreator >	LK_hackCreator_registrator
static EnergyMethodRegistrator < scoring::methods::LK_BallEnergyCreator >	LK_BallEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::LinearChainbreakEnergyCreator >	LinearChainbreakEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMBondAngleEnergyCreator >	MMBondAngleEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CartesianBondedEnergyCreator >	CartesianBondedEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMBondLengthEnergyCreator >	MMBondLengthEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMTorsionEnergyCreator >	MMTorsionEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMLJEnergyInterCreator >	MMLJEnergyInterCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MMLJEnergyIntraCreator >	MMLJEnergyIntraCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneCbetaEnergyCreator >	MembraneCbetaEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneCenPairEnergyCreator >	MembraneCenPairEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneEnvEnergyCreator >	MembraneEnvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneEnvPenaltiesCreator >	MembraneEnvPenaltiesCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SmoothCenPairEnergyCreator >	SmoothCenPairEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SmoothEnvEnergyCreator >	SmoothEnvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CenRotPairEnergyCreator >	CenRotPairEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CenRotEnvEnergyCreator >	CenRotEnvEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::CenHBEnergyCreator >	CenHBEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneLipoCreator >	MembraneLipoCreator_registrator
static EnergyMethodRegistrator < scoring::methods::MembraneEnvSmoothEnergyCreator >	MembraneEnvSmoothEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::pHEnergyCreator >	pHEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ChemicalShiftAnisotropyEnergyCreator >	ChemicalShiftAnisotropyEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::DipolarCouplingEnergyCreator >	DipolarCouplingEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ResidualDipolarCouplingEnergyCreator >	ResidualDipolarCouplingEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::ResidualDipolarCouplingEnergy_RohlCreator >	ResidualDipolarCouplingEnergy_RohlCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SuckerEnergyCreator >	SuckerEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::GaussianOverlapEnergyCreator >	GaussianOverlapEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::YHHPlanarityEnergyCreator >	YYHPlanarityEnergyCreator_registrator
static EnergyMethodRegistrator < pack::interaction_graph::SurfaceEnergyCreator >	SurfaceEnergyCreator_registrator
static EnergyMethodRegistrator < pack::interaction_graph::HPatchEnergyCreator >	HPatchEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::SymmetricLigandEnergyCreator >	SymmetricLigandEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::UnfoldedStateEnergyCreator >	UnfoldedStateEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::WaterAdductHBondEnergyCreator >	WaterAdductHBondEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::methods::WaterAdductIntraEnergyCreator >	WaterAdductIntraEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::packing::HolesEnergyCreator >	HolesEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::packing::SurfVolEnergyCreator >	SurfVolEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::packing::SurfEnergyCreator >	SurfEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RG_Energy_RNACreator >	RG_Energy_RNACreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_BulgeEnergyCreator >	RNA_BulgeEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_DataBackboneEnergyCreator >	RNA_DataBackboneEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_FullAtomStackingEnergyCreator >	RNA_FullAtomStackingEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_LJ_BaseEnergyCreator >	RNA_LJ_BaseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_PairwiseLowResolutionEnergyCreator >	RNA_PairwiseLowResolutionEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_SugarCloseEnergyCreator >	RNA_SugarCloseEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_TorsionEnergyCreator >	RNA_TorsionEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_VDW_EnergyCreator >	RNA_VDW_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_Mg_EnergyCreator >	RNA_Mg_EnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator >	RNA_FullAtomVDW_BasePhosphateCreator_registrator
static EnergyMethodRegistrator < scoring::rna::StackElecEnergyCreator >	StackElecEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::rna::chemical_shift::RNA_ChemicalShiftEnergyCreator >	NA_ChemicalShiftEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::sym_e::symECreator >	symECreator_registrator
static EnergyMethodRegistrator < scoring::methods::PoissonBoltzmannEnergyCreator >	PoissonBoltzmannEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::saxs::FastSAXSEnergyCreator >	FastSAXSEnergyCreator_registrator
static EnergyMethodRegistrator < scoring::saxs::SAXSEnergyCreatorCEN >	SAXSEnergyCreatorCEN_registrator
static EnergyMethodRegistrator < scoring::saxs::SAXSEnergyCreatorFA >	SAXSEnergyCreatorFA_registrator
static EnergyMethodRegistrator < scoring::saxs::SAXSEnergyCreator >	SAXSEnergyCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousConstraintCreator >	AmbiguousConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousNMRConstraintCreator >	AmbiguousNMRConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator >	AmbiguousNMRDistanceConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AngleConstraintCreator >	AngleConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::AtomPairConstraintCreator >	AtomPairConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::BigBinConstraintCreator >	BigBinConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::CoordinateConstraintCreator >	CoordinateConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::DihedralConstraintCreator >	DihedralConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::DihedralPairConstraintCreator >	DihedralPairConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::KofNConstraintCreator >	KofNConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::LocalCoordinateConstraintCreator >	LocalCoordinateConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::MultiConstraintCreator >	MultiConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::FabConstraintCreator >	FabConstraintCreator_registrator
static ConstraintRegistrator < core::pack::dunbrack::DunbrackConstraintCreator >	DunbrackConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SiteConstraintCreator >	SiteConstraintCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SiteConstraintResiduesCreator >	SiteConstraintResiduesCreator_registrator
static ConstraintRegistrator < core::scoring::constraints::SequenceProfileConstraintCreator >	SequenceProfileConstraintCreator_registrator
static SilentStructRegistrator < core::io::silent::ProteinSilentStructCreator >	ProteinSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ProteinSilentStruct_SinglePrecCreator >	ProteinSilentStruct_SinglePrecCreator_registrator
static SilentStructRegistrator < core::io::silent::RNA_SilentStructCreator >	RNA_SilentStructCreator_registrator
static SilentStructRegistrator < core::import_pose::PDBSilentStructCreator >	PDBSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::BinarySilentStructCreator >	BinarySilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ScoreFileSilentStructCreator >	ScoreFileSilentStructCreator_registrator
static SilentStructRegistrator < core::io::silent::ScoreJumpFileSilentStructCreator >	ScoreJumpFileSilentStructCreator_registrator
static SequenceRegistrator < core::sequence::SimpleSequenceCreator >	SimpleSequenceCreator_registrator
static SequenceRegistrator < core::sequence::SequenceProfileCreator >	SequenceProfileCreator_registrator
static SequenceRegistrator < core::sequence::SequenceCouplingCreator >	SequenceCouplingCreator_registrator
static SequenceRegistrator < core::sequence::CompositeSequenceCreator >	CompositeSequenceCreator_registrator
static TaskOperationRegistrator < RestrictYSDesignCreator >	RestrictYSDesignCreator_registrator
static TaskOperationRegistrator < PreventRepackingCreator >	PreventRepackingCreator_registrator
static TaskOperationRegistrator < PreserveCBetaCreator >	PreserveCBetaCreator_registrator
static TaskOperationRegistrator < AppendRotamerSetCreator >	AppendRotamerSetCreator_registrator
static TaskOperationRegistrator < AppendRotamerCreator >	AppendRotamerCreator_registrator
static TaskOperationRegistrator < ExtraRotamersCreator >	ExtraRotamersCreator_registrator
static TaskOperationRegistrator < ExtraChiCutoffCreator >	ExtraChiCutoffCreator_registrator
static TaskOperationRegistrator < SetRotamerCouplingsCreator >	SetRotamerCouplingsCreator_registrator
static TaskOperationRegistrator < SetRotamerLinksCreator >	SetRotamerLinksCreator_registrator
static TaskOperationRegistrator < ReadResfileCreator >	ReadResfileCreator_registrator
static TaskOperationRegistrator < ReadResfileAndObeyLengthEventsCreator >	ReadResfileAndObeyLengthEventsCreator_registrator
static TaskOperationRegistrator < IncludeCurrentCreator >	IncludeCurrentCreator_registrator
static TaskOperationRegistrator < InitializeExtraRotsFromCommandlineCreator >	InitializeExtraRotsFromCommandlineCreator_registrator
static TaskOperationRegistrator < InitializeFromCommandlineCreator >	InitializeFromCommandlineCreator_registrator
static TaskOperationRegistrator < ExtraRotamersGenericCreator >	ExtraRotamersGenericCreator_registrator
static TaskOperationRegistrator < RotamerExplosionCreator >	RotamerExplosionCreator_registrator
static TaskOperationRegistrator < RestrictAbsentCanonicalAASCreator >	RestrictAbsentCanonicalAASCreator_registrator
static TaskOperationRegistrator < DisallowIfNonnativeCreator >	DisallowIfNonnativeCreator_registrator
static TaskOperationRegistrator < RestrictResidueToRepackingCreator >	RestrictResidueToRepackingCreator_registrator
static TaskOperationRegistrator < RestrictToRepackingCreator >	RestrictToRepackingCreator_registrator
static TaskOperationRegistrator < OperateOnCertainResiduesCreator >	OperateOnCertainResiduesCreator_registrator
static TaskOperationRegistrator < OperateOnResidueSubsetCreator >	OperateOnResidueSubsetCreator_registrator
static TaskOperationRegistrator < NoRepackDisulfidesCreator >	NoRepackDisulfidesCreator_registrator
static TaskOperationRegistrator < ReplicateTaskCreator >	ReplicateTaskCreator_registrator
static TaskOperationRegistrator < OptCysHGCreator >	OptCysHGCreator_registrator
static TaskOperationRegistrator < OptHCreator >	OptHCreator_registrator
static ResLvlTaskOperationRegistrator < RestrictToRepackingRLTCreator >	RestrictToRepackingRLTCreator_registrator
static ResLvlTaskOperationRegistrator < RestrictAbsentCanonicalAASRLTCreator >	RestrictAbsentCanonicalAASRLTCreator_registrator
static ResLvlTaskOperationRegistrator < DisallowIfNonnativeRLTCreator >	DisallowIfNonnativeRLTCreator_registrator
static ResLvlTaskOperationRegistrator < PreventRepackingRLTCreator >	PreventRepackingRLTCreator_registrator
static ResLvlTaskOperationRegistrator < AddBehaviorRLTCreator >	AddBehaviorRLTCreator_registrator
static ResFilterRegistrator < ResidueHasPropertyCreator >	ResidueHasPropertyCreator_registrator
static ResFilterRegistrator < ResiduePDBInfoHasLabelCreator >	ResiduePDBInfoHasLabelCreator_registrator
static ResFilterRegistrator < ResidueLacksPropertyCreator >	ResidueLacksPropertyCreator_registrator
static ResFilterRegistrator < ResidueName3IsCreator >	ResidueName3IsCreator_registrator
static ResFilterRegistrator < ResidueName3IsntCreator >	ResidueName3IsntCreator_registrator
static ResFilterRegistrator < ResidueIndexIsCreator >	ResidueIndexIsCreator_registrator
static ResFilterRegistrator < ResidueIndexIsntCreator >	ResidueIndexIsntCreator_registrator
static ResFilterRegistrator < ResiduePDBIndexIsCreator >	ResiduePDBIndexIsCreator_registrator
static ResFilterRegistrator < ResiduePDBIndexIsntCreator >	ResiduePDBIndexIsntCreator_registrator
static ResFilterRegistrator < ChainIsCreator >	ChainIsCreator_registrator
static ResFilterRegistrator < ChainIsntCreator >	ChainIsntCreator_registrator
static ResFilterRegistrator < AnyResFilterCreator >	AnyResFilterCreator_registrator
static ResFilterRegistrator < AllResFilterCreator >	AllResFilterCreator_registrator
static ResFilterRegistrator < NoResFilterCreator >	NoResFilterCreator_registrator
static ResFilterRegistrator < ResidueTypeFilterCreator >	ResidueTypeResFilterCreator_registrator
static ResidueSelectorRegistrator < AndResidueSelectorCreator >	reg_AndResidueSelectorCreator
static ResidueSelectorRegistrator < ChainSelectorCreator >	reg_ChainSelectorCreator
static ResidueSelectorRegistrator < InterGroupInterfaceByVectorSelectorCreator >	reg_InterGroupInterfaceByVectorSelectorCreator
static ResidueSelectorRegistrator < JumpDownstreamSelectorCreator >	reg_JumpDownstreamSelectorCreator
static ResidueSelectorRegistrator < JumpUpstreamSelectorCreator >	reg_JumpUpstreamSelectorCreator
static ResidueSelectorRegistrator < NeighborhoodResidueSelectorCreator >	reg_NeighborhoodResidueSelectorCreator
static ResidueSelectorRegistrator < NotResidueSelectorCreator >	reg_NotResidueSelectorCreator
static ResidueSelectorRegistrator < NumNeighborsSelectorCreator >	reg_NumNeighborsSelectorCreator
static ResidueSelectorRegistrator < OrResidueSelectorCreator >	reg_OrResidueSelectorCreator
static ResidueSelectorRegistrator < ResidueIndexSelectorCreator >	reg_ResidueIndexSelectorCreator
static ResourceLoaderRegistrator < core::conformation::symmetry::SymmDataLoaderCreator >	SymmDataLoaderCreator_registrator
static ResourceLoaderRegistrator < core::io::silent::SilentFileLoaderCreator >	SilentFileLoaderCreator_registrator
static ResourceLoaderRegistrator < core::import_pose::PoseFromPDBLoaderCreator >	PoseFromPDBLoaderCreator_registrator
static ResourceLoaderRegistrator < core::scoring::electron_density::ElectronDensityLoaderCreator >	ElectronDensityLoaderCreator_registrator
static ResourceLoaderRegistrator < core::chemical::ResidueLoaderCreator >	ResidueLoaderCreator_registrator
static ResourceLoaderRegistrator < core::membrane::io::EmbedSearchParamsLoaderCreator >	EmbedSearchParamsLoaderCreator_registrator
static ResourceLoaderRegistrator < core::membrane::io::SpanFileLoaderCreator >	SpanFileLoaderCreator_registrator
static ResourceLoaderRegistrator < core::membrane::io::LipoFileLoaderCreator >	LipOFileLoaderCreator_registrator
static ResourceLoaderRegistrator < core::membrane::io::EmbedDefLoaderCreator >	EmbedDefLoaderCreator_registrator
static ResourceOptionsRegistrator < core::conformation::symmetry::SymmDataOptionsCreator >	SymmDataOptionsCreator_registrator
static ResourceOptionsRegistrator < core::import_pose::ImportPoseOptionsCreator >	ImportPoseOptionsCreator_registrator
static ResourceOptionsRegistrator < core::io::silent::SilentFileOptionsCreator >	SilentFileOptionsCreator_registrator
static ResourceOptionsRegistrator < core::scoring::electron_density::ElectronDensityOptionsCreator >	ElectronDensityOptionsCreator_registrator
static ResourceOptionsRegistrator < core::chemical::ResidueLoaderOptionsCreator >	ResiudeLoaderOptionsCreator_registrator
static ResourceOptionsRegistrator < core::membrane::io::EmbedSearchParamsOptionsCreator >	EmbedSearchParamsOptionsCreator_registrator
static ResourceOptionsRegistrator < core::membrane::io::SpanFileOptionsCreator >	SpanFileOptionsCreator_registrator
static ResourceOptionsRegistrator < core::membrane::io::LipoFileOptionsCreator >	LipoFileLoaderCreator_registrator
static ResourceOptionsRegistrator < core::membrane::io::EmbedDefOptionsCreator >	EmbedDefOptionsCreator_registrator
static basic::Tracer	TR ("core.init")
pre_talaris_2013_behavior_settings const	restore_sc12_settings
static basic::Tracer	TR ("core.init.score_function_corrections")

Function Documentation

void core::init::check_deprecated_flags

(

)

Check for deprecated flags specified by the user and output error messages if necessary.

Check for deprecated flags and utility exit if any deprecated flags are detected.

If you deprecate a long standing flag, add a line to this function to describe what the deprecated flag has been replaced with. If the user specifies one of these flags, Rosetta will utility exit with a helpful message directing the user towards the new functionality

References LoopModel::input_pdb, option, TR, and user.

Referenced by init().

void core::init::check_score_function_sanity	(	std::string const &	scorefxn_key,
		bool	only_warn
	)

Check if a score function is requested with incompatible option flags.

References option, mistakes::restore_pre_talaris_2013_behavior, and TR.

void core::init::init	(	int	argc,
		char *	argv[]
	)

Init basic core systems: options system, random system.

References check_deprecated_flags(), basic::init(), init_mpi(), init_options(), init_paths(), init_profiling(), init_random_number_generators(), init_score_function_corrections(), init_source_revision(), init_tracers(), locate_rosetta_database(), random_delay(), report_application_command(), and TR.

Referenced by core::scoring::electron_density::ElectronDensity::ElectronDensity(), init(), core::scoring::sasa::input_legrand_sasa_dats(), core::scoring::input_sasa_dats(), core::scoring::packstat::old::input_sasa_dats(), core::io::silent::SilentStruct::rename_energies(), and core::scoring::methods::LKB_ResidueInfo::setup_atom_weights().

void core::init::init

(

utility::vector1< std::string > const &

args

)

wrapper for core system Init

References init(), and core::io::serialization::size().

void core::init::init_beta_correction

(

)

Initialize the -beta score function.

References corrections::beta, score::bonded_params_dir, optimization::nonideal, option, user, and score::weights.

Referenced by init_score_function_corrections().

void core::init::init_correct_correction

(

)

Initialize the -correct correction.

References corrections::score::ch_o_bond_potential, corrections::correct, corrections::score::dun02_file, score::hbond_params, corrections::chemical::icoor_05_2009, corrections::score::no_his_his_pairE, option, corrections::score::p_aa_pp, corrections::score::p_aa_pp_nogridshift, corrections::score::rama_map, corrections::score::rama_not_squared, mistakes::restore_pre_talaris_2013_behavior, TR, user, and score::weights.

Referenced by init_score_function_corrections().

void core::init::init_crystal_refinement_correction

(

)

Initialize the crystal refinement correction.

References cryst::crystal_refine, corrections::score::dun10, corrections::chemical::icoor_05_2009, in::missing_density_to_jump, out::file::no_output_cen, option, in::preserve_crystinfo, corrections::score::rama_map, corrections::score::rama_not_squared, optimization::scale_rb, corrections::score::use_bicubic_interpolation, and user.

Referenced by init_score_function_corrections().

void core::init::init_facts_correction

(

)

Initialize the FACTS correction.

References corrections::correct, score::facts_asp_patch, corrections::facts_default, score::facts_die, score::facts_dshift, score::facts_GBpair_cut, score::facts_kappa, score::facts_plane_to_self, corrections::score::hb_fade_energy, corrections::score::hb_sp2_chipen, corrections::score::hbond_measure_sp3acc_BAH_from_hvy, score::hbond_params, corrections::score::lj_hbond_hdis, corrections::score::lj_hbond_OH_donor_dis, option, params, corrections::score::use_bicubic_interpolation, and user.

Referenced by init_score_function_corrections().

void core::init::init_hbond_sp2_correction

(

)

Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default.

References corrections::correct, corrections::score::dun10, score::elec_min_dis, score::elec_r_option, corrections::chemical::expand_st_chi2sampling, corrections::facts_default, corrections::score::hb_fade_energy, corrections::score::hb_sp2_BAH180_rise, corrections::score::hb_sp2_chipen, corrections::score::hb_sp2_outer_width, corrections::score::hbond_measure_sp3acc_BAH_from_hvy, score::hbond_params, corrections::hbond_sp2_correction, corrections::score::lj_hbond_hdis, corrections::score::lj_hbond_OH_donor_dis, option, params, mistakes::restore_pre_talaris_2013_behavior, basic::options::OptionKeys::chemical::set_atom_properties, score::smooth_fa_elec, TR, corrections::score::use_bicubic_interpolation, user, and score::weights.

Referenced by init_score_function_corrections().

void core::init::init_mpi	(	int	argc,
		char *	argv[]
	)

Initialize MPI (message passing interface) for parallel applications.

void core::init::init_mpi	(	int	,
		char **
	)

Referenced by init().

void core::init::init_nonideal_correction

(

)

Initialize nonideal bond geometry correction.

References optimization::default_max_cycles, relax::dualspace, core::scoring::getScoreFunction(), relax::minimize_bond_angles, in::missing_density_to_jump, optimization::nonideal, option, optimization::scmin_cartesian, optimization::scmin_nonideal, TR, user, and score::weights.

Referenced by init_score_function_corrections().

void core::init::init_options	(	int	argc,
		char *	argv[]
	)

Initialize the option system, which manages command line options.

References initialize(), utility::options::OptionCollection::load(), option, process(), utility::options::OptionCollection::set_show_accessed_options_flag(), and out::show_accessed_options.

Referenced by init().

void core::init::init_paths

(

)

Setup basic search paths.

References option, in::path::path, utility::io::izstream::set_alternative_search_paths(), and user.

Referenced by init().

void core::init::init_profiling

(

)

Profiling measures execution performance.

References basic::prof_reset().

Referenced by init().

void core::init::init_random_generators	(	int const	start_seed,
		RND_RunType	run_type,
		std::string const &	RGtype
	)

Initialize random generator systems (and send debug io to tracer with seed/mode info).

References _RND_TestRun_, and numeric::random::RandomGenerator::initializeRandomGenerators().

Referenced by init_random_number_generators().

void core::init::init_random_number_generators

(

)

Initalize random number generators.

References _RND_NormalRun_, run::constant_seed, init_random_generators(), run::jran, mpi_rank(), option, run::rng, run::rng_seed_device, run::seed_offset, seed_offset, TR, use_time_as_seed, and run::use_time_as_seed.

Referenced by init().

void core::init::init_restore_score12prime

(

)

restore the the score function to the Score12prime version

References option, score::patch, revert_to_pre_talaris_2013_defaults(), corrections::score::score12prime, and score::weights.

void core::init::init_revert_to_pre_talaris_2013_mistake

(

)

Initialize the "revert to before Talaris2013" mistake.

References option, mistakes::restore_pre_talaris_2013_behavior, and revert_to_pre_talaris_2013_defaults().

Referenced by init_score_function_corrections().

void core::init::init_score_function_corrections

(

)

Initialize the latest and greatest score function parameters.

References init_beta_correction(), init_correct_correction(), init_crystal_refinement_correction(), init_facts_correction(), init_hbond_sp2_correction(), init_nonideal_correction(), and init_revert_to_pre_talaris_2013_mistake().

Referenced by init().

void core::init::init_source_revision

(

)

Choose to output source version control information?

References core::minirosetta_svn_url(), core::minirosetta_svn_version(), option, TR, and run::version.

Referenced by init().

void core::init::init_tracers

(

)

Tracers control output to std::cout and std::cerr.

References utility::add_exit_callback(), out::chname, out::chtimestamp, basic::TracerOptions::level, out::level, out::levels, basic::TracerOptions::levels, mpi_rank(), out::mpi_tracer_to_file, out::mute, basic::TracerOptions::muted, option, basic::TracerOptions::print_channel_name, basic::TracerOptions::timestamp, out::unmute, basic::TracerOptions::unmuted, and user.

Referenced by init().

void core::init::locate_rosetta_database

(

)

Locate rosetta_database.

References in::path::database, option, path, TR, and user.

Referenced by init().

void core::init::random_delay

(

)

Choose to randomly delay execution to desyncronize parallel execution.

References run::delay, run::nodelay, option, run::random_delay, utility::sys_sleep(), TR, and numeric::random::uniform().

Referenced by init().

void core::init::report_application_command	(	int	argc,
		char *	argv[]
	)

Describe the application execution command.

References TR.

Referenced by init().

void core::init::revert_to_pre_talaris_2013_defaults

(

)

Reset a set of flags to their pre-talaris behavior.

References score::analytic_etable_evaluation, core::init::pre_talaris_2013_behavior_settings::analytic_etable_evaluation, corrections::score::dun10, core::init::pre_talaris_2013_behavior_settings::dun10, score::elec_min_dis, core::init::pre_talaris_2013_behavior_settings::elec_min_dis, corrections::chemical::expand_st_chi2sampling, core::init::pre_talaris_2013_behavior_settings::expand_st_chi2sampling, corrections::score::hb_fade_energy, core::init::pre_talaris_2013_behavior_settings::hb_fade_energy, corrections::score::hb_sp2_chipen, core::init::pre_talaris_2013_behavior_settings::hb_sp2_chipen, corrections::score::hb_sp2_outer_width, core::init::pre_talaris_2013_behavior_settings::hb_sp2_outer_width, corrections::score::hbond_measure_sp3acc_BAH_from_hvy, core::init::pre_talaris_2013_behavior_settings::hbond_measure_sp3acc_BAH_from_hvy, score::hbond_params, core::init::pre_talaris_2013_behavior_settings::hbond_params, corrections::score::lj_hbond_hdis, core::init::pre_talaris_2013_behavior_settings::lj_hbond_hdis, corrections::score::lj_hbond_OH_donor_dis, core::init::pre_talaris_2013_behavior_settings::lj_hbond_OH_donor_dis, ddg::min_cst_weights, option, score::pack_weights, params, score::patch, mistakes::chemical::pre_talaris2013_geometries, core::init::pre_talaris_2013_behavior_settings::pre_talaris2013_geometries, restore_sc12_settings, core::init::pre_talaris_2013_behavior_settings::score_patch, core::init::pre_talaris_2013_behavior_settings::score_weights, basic::options::OptionKeys::chemical::set_atom_properties, score::smooth_fa_elec, core::init::pre_talaris_2013_behavior_settings::smooth_fa_elec, corrections::score::use_bicubic_interpolation, core::init::pre_talaris_2013_behavior_settings::use_bicubic_interpolation, user, score::weights, and qsar::weights.

Referenced by init_restore_score12prime(), and init_revert_to_pre_talaris_2013_mistake().

Variable Documentation

ResLvlTaskOperationRegistrator< AddBehaviorRLTCreator > core::init::AddBehaviorRLTCreator_registrator

static

ResFilterRegistrator< AllResFilterCreator > core::init::AllResFilterCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::AmbiguousConstraintCreator > core::init::AmbiguousConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRConstraintCreator > core::init::AmbiguousNMRConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator > core::init::AmbiguousNMRDistanceConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::AngleConstraintCreator > core::init::AngleConstraintCreator_registrator

static

ResFilterRegistrator< AnyResFilterCreator > core::init::AnyResFilterCreator_registrator

static

TaskOperationRegistrator< AppendRotamerCreator > core::init::AppendRotamerCreator_registrator

static

TaskOperationRegistrator< AppendRotamerSetCreator > core::init::AppendRotamerSetCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::AtomPairConstraintCreator > core::init::AtomPairConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::BigBinConstraintCreator > core::init::BigBinConstraintCreator_registrator

static

SilentStructRegistrator< core::io::silent::BinarySilentStructCreator > core::init::BinarySilentStructCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::BurialEnergyCreator > core::init::BurialCreator_registrator

static

EnergyMethodRegistrator< scoring::carbon_hbonds::CarbonHBondEnergyCreator > core::init::CarbonHBondEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CartesianBondedEnergyCreator > core::init::CartesianBondedEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CenHBEnergyCreator > core::init::CenHBEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CenPairEnergyCreator > core::init::CenPairEnergyCreator_registrator

static

EnergyMethodRegistrator< pack::dunbrack::cenrot::CenRotDunEnergyCreator > core::init::CenRotDunEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CenRotEnvEnergyCreator > core::init::CenRotEnvEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CenRotPairEnergyCreator > core::init::CenRotPairEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::disulfides::CentroidDisulfideEnergyCreator > core::init::CentroidDisulfideEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ChainbreakEnergyCreator > core::init::ChainbreakEnergyCreator_registrator

static

ResFilterRegistrator< ChainIsCreator > core::init::ChainIsCreator_registrator

static

ResFilterRegistrator< ChainIsntCreator > core::init::ChainIsntCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ChemicalShiftAnisotropyEnergyCreator > core::init::ChemicalShiftAnisotropyEnergyCreator_registrator

static

SequenceRegistrator< core::sequence::CompositeSequenceCreator > core::init::CompositeSequenceCreator_registrator

static

EnergyMethodRegistrator< scoring::constraints::ConstraintsEnergyCreator > core::init::ConstraintsEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ContactOrderEnergyCreator > core::init::ContactOrderEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::geometric_solvation::ContextIndependentGeometricSolEnergyCreator > core::init::ContextIndependentGeometricSolEnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::CoordinateConstraintCreator > core::init::CoordinateConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::CustomAtomPairEnergyCreator > core::init::CustomAtomPairEnergy_registrator

static

EnergyMethodRegistrator< scoring::methods::D2H_SA_EnergyCreator > core::init::D2H_SA_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::interface_::DDPscoreCreator > core::init::DDPscoreCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::dfire::DFIRE_EnergyCreator > core::init::DFIRE_EnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::DihedralConstraintCreator > core::init::DihedralConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::DihedralPairConstraintCreator > core::init::DihedralPairConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::DipolarCouplingEnergyCreator > core::init::DipolarCouplingEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::DirectReadoutEnergyCreator > core::init::DirectReadoutEnergyCreator_registrator

static

TaskOperationRegistrator< DisallowIfNonnativeCreator > core::init::DisallowIfNonnativeCreator_registrator

static

ResLvlTaskOperationRegistrator< DisallowIfNonnativeRLTCreator > core::init::DisallowIfNonnativeRLTCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::DistanceChainbreakEnergyCreator > core::init::DistanceChainbreakEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::disulfides::DisulfideMatchingEnergyCreator > core::init::DisulfideMatchingEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::DNA_BaseEnergyCreator > core::init::DNA_BaseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::dna::DNAChiEnergyCreator > core::init::DNAChiEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::dna::DNATorsionEnergyCreator > core::init::DNATorsionEnergyCreator_registrator

static

ConstraintRegistrator< core::pack::dunbrack::DunbrackConstraintCreator > core::init::DunbrackConstraintCreator_registrator

static

EnergyMethodRegistrator< pack::dunbrack::DunbrackEnergyCreator > core::init::DunbrackEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density::ElecDensAllAtomCenEnergyCreator > core::init::ElecDensAllAtomCenEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density_atomwise::ElecDensAtomwiseEnergyCreator > core::init::ElecDensAtomwiseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density::ElecDensCenEnergyCreator > core::init::ElecDensCenEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density::ElecDensEnergyCreator > core::init::ElecDensEnergyCreator_registrator

static

ResourceLoaderRegistrator< core::scoring::electron_density::ElectronDensityLoaderCreator > core::init::ElectronDensityLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::scoring::electron_density::ElectronDensityOptionsCreator > core::init::ElectronDensityOptionsCreator_registrator

static

ResourceLoaderRegistrator< core::membrane::io::EmbedDefLoaderCreator > core::init::EmbedDefLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::membrane::io::EmbedDefOptionsCreator > core::init::EmbedDefOptionsCreator_registrator

static

ResourceLoaderRegistrator< core::membrane::io::EmbedSearchParamsLoaderCreator > core::init::EmbedSearchParamsLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::membrane::io::EmbedSearchParamsOptionsCreator > core::init::EmbedSearchParamsOptionsCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::EnvEnergyCreator > core::init::EnvEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::EnvSmoothEnergyCreator > core::init::EnvSmoothEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::etable::EtableEnergyCreator > core::init::EtableEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::geometric_solvation::ExactOccludedHbondSolEnergyCreator > core::init::ExactOccludedHbondSolEnergyCreator_registrator

static

TaskOperationRegistrator< ExtraChiCutoffCreator > core::init::ExtraChiCutoffCreator_registrator

static

TaskOperationRegistrator< ExtraRotamersCreator > core::init::ExtraRotamersCreator_registrator

static

TaskOperationRegistrator< ExtraRotamersGenericCreator > core::init::ExtraRotamersGenericCreator_registrator

static

EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyAroAllCreator > core::init::FA_ElecEnergyAroAllCreator_registrator

static

EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyAroAroCreator > core::init::FA_ElecEnergyAroAroCreator_registrator

static

EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyCreator > core::init::FA_ElecEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::Fa_MbenvEnergyCreator > core::init::Fa_MbenvEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::Fa_MbsolvEnergyCreator > core::init::Fa_MbsolvEnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::FabConstraintCreator > core::init::FabConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::FACTSEnergyCreator > core::init::FACTSEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density::FastDensEnergyCreator > core::init::FastDensEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::saxs::FastSAXSEnergyCreator > core::init::FastSAXSEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::FreeMoietyEnergyCreator > core::init::FreeMoietyEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator > core::init::FullatomCustomPairDistanceEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::disulfides::FullatomDisulfideEnergyCreator > core::init::FullatomDisulfideEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::GaussianOverlapEnergyCreator > core::init::GaussianOverlapEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::GenBornEnergyCreator > core::init::GenBornEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::geometric_solvation::GeometricSolEnergyCreator > core::init::GeometricSolEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::GoapEnergyCreator > core::init::GoapEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::hackaro::HackAroEnergyCreator > core::init::HackAroEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::hbonds::HBondEnergyCreator > core::init::HBondEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::packing::HolesEnergyCreator > core::init::HolesEnergyCreator_registrator

static

EnergyMethodRegistrator< pack::interaction_graph::HPatchEnergyCreator > core::init::HPatchEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::HybridVDW_EnergyCreator > core::init::HybridVDW_EnergyCreator_registrator

static

ResourceOptionsRegistrator< core::import_pose::ImportPoseOptionsCreator > core::init::ImportPoseOptionsCreator_registrator

static

TaskOperationRegistrator< IncludeCurrentCreator > core::init::IncludeCurrentCreator_registrator

static

TaskOperationRegistrator< InitializeExtraRotsFromCommandlineCreator > core::init::InitializeExtraRotsFromCommandlineCreator_registrator

static

TaskOperationRegistrator< InitializeFromCommandlineCreator > core::init::InitializeFromCommandlineCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::IntermolEnergyCreator > core::init::IntermolEnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::KofNConstraintCreator > core::init::KofNConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::LinearChainbreakEnergyCreator > core::init::LinearChainbreakEnergyCreator_registrator

static

ResourceLoaderRegistrator< core::membrane::io::LipoFileLoaderCreator > core::init::LipOFileLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::membrane::io::LipoFileOptionsCreator > core::init::LipoFileLoaderCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::LK_BallEnergyCreator > core::init::LK_BallEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::LK_hackCreator > core::init::LK_hackCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::LK_PolarNonPolarEnergyCreator > core::init::LK_PolarNonPolarEnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::LocalCoordinateConstraintCreator > core::init::LocalCoordinateConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::loop_graph::LoopCloseEnergyCreator > core::init::LoopCloseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneCbetaEnergyCreator > core::init::MembraneCbetaEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneCenPairEnergyCreator > core::init::MembraneCenPairEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneEnvEnergyCreator > core::init::MembraneEnvEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneEnvPenaltiesCreator > core::init::MembraneEnvPenaltiesCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneEnvSmoothEnergyCreator > core::init::MembraneEnvSmoothEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MembraneLipoCreator > core::init::MembraneLipoCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MissingEnergyCreator > core::init::MissingEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MMBondAngleEnergyCreator > core::init::MMBondAngleEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MMBondLengthEnergyCreator > core::init::MMBondLengthEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MMLJEnergyInterCreator > core::init::MMLJEnergyInterCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MMLJEnergyIntraCreator > core::init::MMLJEnergyIntraCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::MMTorsionEnergyCreator > core::init::MMTorsionEnergyCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::MultiConstraintCreator > core::init::MultiConstraintCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::chemical_shift::RNA_ChemicalShiftEnergyCreator > core::init::NA_ChemicalShiftEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::NMerPSSMEnergyCreator > core::init::NMerPSSMEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::NMerRefEnergyCreator > core::init::NMerRefEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::NMerSVMEnergyCreator > core::init::NMerSVMEnergyCreator_registrator

static

TaskOperationRegistrator< NoRepackDisulfidesCreator > core::init::NoRepackDisulfidesCreator_registrator

static

ResFilterRegistrator< NoResFilterCreator > core::init::NoResFilterCreator_registrator

static

EnergyMethodRegistrator< scoring::nv::NVscoreCreator > core::init::NVscoreCreator_registrator

static

EnergyMethodRegistrator< scoring::geometric_solvation::OccludedHbondSolEnergy_onebodyCreator > core::init::OccludedHbondSolEnergy_onebodyCreator_registrator

static

EnergyMethodRegistrator< scoring::geometric_solvation::OccludedHbondSolEnergyCreator > core::init::OccludedHbondSolEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::OmegaTetherEnergyCreator > core::init::OmegaTetherEnergyCreator_registrator

static

TaskOperationRegistrator< OperateOnCertainResiduesCreator > core::init::OperateOnCertainResiduesCreator_registrator

static

TaskOperationRegistrator< OperateOnResidueSubsetCreator > core::init::OperateOnResidueSubsetCreator_registrator

static

TaskOperationRegistrator< OptCysHGCreator > core::init::OptCysHGCreator_registrator

static

TaskOperationRegistrator< OptHCreator > core::init::OptHCreator_registrator

static

EnergyMethodRegistrator< scoring::orbitals::OrbitalsScoreCreator > core::init::OrbitalsScoreCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::OtherPoseEnergyCreator > core::init::OtherPoseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::P_AA_EnergyCreator > core::init::P_AA_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::P_AA_pp_EnergyCreator > core::init::P_AA_pp_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::PackStatEnergyCreator > core::init::PackStatEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::PairEnergyCreator > core::init::PairEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::electron_density::PattersonCorrEnergyCreator > core::init::PattersonCorrEnergyCreator_registrator

static

SilentStructRegistrator< core::import_pose::PDBSilentStructCreator > core::init::PDBSilentStructCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::PeptideBondEnergyCreator > core::init::PeptideBondEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::pHEnergyCreator > core::init::pHEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::PoissonBoltzmannEnergyCreator > core::init::PoissonBoltzmannEnergyCreator_registrator

static

ResourceLoaderRegistrator< core::import_pose::PoseFromPDBLoaderCreator > core::init::PoseFromPDBLoaderCreator_registrator

static

TaskOperationRegistrator< PreserveCBetaCreator > core::init::PreserveCBetaCreator_registrator

static

TaskOperationRegistrator< PreventRepackingCreator > core::init::PreventRepackingCreator_registrator

static

ResLvlTaskOperationRegistrator< PreventRepackingRLTCreator > core::init::PreventRepackingRLTCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ProClosureEnergyCreator > core::init::ProClosureEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ProQ_EnergyCreator > core::init::ProQ_EnergyCreator_registrator

static

SilentStructRegistrator< core::io::silent::ProteinSilentStruct_SinglePrecCreator > core::init::ProteinSilentStruct_SinglePrecCreator_registrator

static

SilentStructRegistrator< core::io::silent::ProteinSilentStructCreator > core::init::ProteinSilentStructCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::Rama2BOffsetEnergyCreator > core::init::Ramac2BOffsetEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::RamachandranEnergy2BCreator > core::init::RamachandranEnergy2BCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::RamachandranEnergyCreator > core::init::RamachandranEnergyCreator_registrator

static

TaskOperationRegistrator< ReadResfileAndObeyLengthEventsCreator > core::init::ReadResfileAndObeyLengthEventsCreator_registrator

static

TaskOperationRegistrator< ReadResfileCreator > core::init::ReadResfileCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ReferenceEnergyCreator > core::init::ReferenceEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ReferenceEnergyNoncanonicalCreator > core::init::ReferenceEnergyNoncanonicalCreator_registrator

static

ResidueSelectorRegistrator< AndResidueSelectorCreator > core::init::reg_AndResidueSelectorCreator

static

ResidueSelectorRegistrator< ChainSelectorCreator > core::init::reg_ChainSelectorCreator

static

ResidueSelectorRegistrator< InterGroupInterfaceByVectorSelectorCreator > core::init::reg_InterGroupInterfaceByVectorSelectorCreator

static

ResidueSelectorRegistrator< JumpDownstreamSelectorCreator > core::init::reg_JumpDownstreamSelectorCreator

static

ResidueSelectorRegistrator< JumpUpstreamSelectorCreator > core::init::reg_JumpUpstreamSelectorCreator

static

ResidueSelectorRegistrator< NeighborhoodResidueSelectorCreator > core::init::reg_NeighborhoodResidueSelectorCreator

static

ResidueSelectorRegistrator< NotResidueSelectorCreator > core::init::reg_NotResidueSelectorCreator

static

ResidueSelectorRegistrator< NumNeighborsSelectorCreator > core::init::reg_NumNeighborsSelectorCreator

static

ResidueSelectorRegistrator< OrResidueSelectorCreator > core::init::reg_OrResidueSelectorCreator

static

ResidueSelectorRegistrator< ResidueIndexSelectorCreator > core::init::reg_ResidueIndexSelectorCreator

static

TaskOperationRegistrator< ReplicateTaskCreator > core::init::ReplicateTaskCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ResidualDipolarCouplingEnergy_RohlCreator > core::init::ResidualDipolarCouplingEnergy_RohlCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::ResidualDipolarCouplingEnergyCreator > core::init::ResidualDipolarCouplingEnergyCreator_registrator

static

ResFilterRegistrator< ResidueHasPropertyCreator > core::init::ResidueHasPropertyCreator_registrator

static

ResFilterRegistrator< ResidueIndexIsCreator > core::init::ResidueIndexIsCreator_registrator

static

ResFilterRegistrator< ResidueIndexIsntCreator > core::init::ResidueIndexIsntCreator_registrator

static

ResFilterRegistrator< ResidueLacksPropertyCreator > core::init::ResidueLacksPropertyCreator_registrator

static

ResourceLoaderRegistrator< core::chemical::ResidueLoaderCreator > core::init::ResidueLoaderCreator_registrator

static

ResFilterRegistrator< ResidueName3IsCreator > core::init::ResidueName3IsCreator_registrator

static

ResFilterRegistrator< ResidueName3IsntCreator > core::init::ResidueName3IsntCreator_registrator

static

ResFilterRegistrator< ResiduePDBIndexIsCreator > core::init::ResiduePDBIndexIsCreator_registrator

static

ResFilterRegistrator< ResiduePDBIndexIsntCreator > core::init::ResiduePDBIndexIsntCreator_registrator

static

ResFilterRegistrator< ResiduePDBInfoHasLabelCreator > core::init::ResiduePDBInfoHasLabelCreator_registrator

static

ResFilterRegistrator< ResidueTypeFilterCreator > core::init::ResidueTypeResFilterCreator_registrator

static

ResourceOptionsRegistrator< core::chemical::ResidueLoaderOptionsCreator > core::init::ResiudeLoaderOptionsCreator_registrator

static

pre_talaris_2013_behavior_settings const core::init::restore_sc12_settings

Referenced by revert_to_pre_talaris_2013_defaults().

TaskOperationRegistrator< RestrictAbsentCanonicalAASCreator > core::init::RestrictAbsentCanonicalAASCreator_registrator

static

ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASRLTCreator > core::init::RestrictAbsentCanonicalAASRLTCreator_registrator

static

TaskOperationRegistrator< RestrictResidueToRepackingCreator > core::init::RestrictResidueToRepackingCreator_registrator

static

TaskOperationRegistrator< RestrictToRepackingCreator > core::init::RestrictToRepackingCreator_registrator

static

ResLvlTaskOperationRegistrator< RestrictToRepackingRLTCreator > core::init::RestrictToRepackingRLTCreator_registrator

static

TaskOperationRegistrator< RestrictYSDesignCreator > core::init::RestrictYSDesignCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::RG_Energy_FastCreator > core::init::RG_Energy_FastCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RG_Energy_RNACreator > core::init::RG_Energy_RNACreator_registrator

static

EnergyMethodRegistrator< scoring::methods::RG_LocalEnergyCreator > core::init::RG_LocalEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::RMS_EnergyCreator > core::init::RMS_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_BulgeEnergyCreator > core::init::RNA_BulgeEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_DataBackboneEnergyCreator > core::init::RNA_DataBackboneEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::elec::RNA_FA_ElecEnergyCreator > core::init::RNA_FA_ElecEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_FullAtomStackingEnergyCreator > core::init::RNA_FullAtomStackingEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator > core::init::RNA_FullAtomVDW_BasePhosphateCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_LJ_BaseEnergyCreator > core::init::RNA_LJ_BaseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_Mg_EnergyCreator > core::init::RNA_Mg_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_PairwiseLowResolutionEnergyCreator > core::init::RNA_PairwiseLowResolutionEnergyCreator_registrator

static

SilentStructRegistrator< core::io::silent::RNA_SilentStructCreator > core::init::RNA_SilentStructCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_SugarCloseEnergyCreator > core::init::RNA_SugarCloseEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_TorsionEnergyCreator > core::init::RNA_TorsionEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::RNA_VDW_EnergyCreator > core::init::RNA_VDW_EnergyCreator_registrator

static

TaskOperationRegistrator< RotamerExplosionCreator > core::init::RotamerExplosionCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SA_EnergyCreator > core::init::SA_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreator > core::init::SAXSEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreatorCEN > core::init::SAXSEnergyCreatorCEN_registrator

static

EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreatorFA > core::init::SAXSEnergyCreatorFA_registrator

static

SilentStructRegistrator< core::io::silent::ScoreFileSilentStructCreator > core::init::ScoreFileSilentStructCreator_registrator

static

SilentStructRegistrator< core::io::silent::ScoreJumpFileSilentStructCreator > core::init::ScoreJumpFileSilentStructCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SecondaryStructureEnergyCreator > core::init::SecondaryStructureEnergyCreator_registrator

static

SequenceRegistrator< core::sequence::SequenceCouplingCreator > core::init::SequenceCouplingCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::SequenceProfileConstraintCreator > core::init::SequenceProfileConstraintCreator_registrator

static

SequenceRegistrator< core::sequence::SequenceProfileCreator > core::init::SequenceProfileCreator_registrator

static

TaskOperationRegistrator< SetRotamerCouplingsCreator > core::init::SetRotamerCouplingsCreator_registrator

static

TaskOperationRegistrator< SetRotamerLinksCreator > core::init::SetRotamerLinksCreator_registrator

static

ResourceLoaderRegistrator< core::io::silent::SilentFileLoaderCreator > core::init::SilentFileLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::io::silent::SilentFileOptionsCreator > core::init::SilentFileOptionsCreator_registrator

static

SequenceRegistrator< core::sequence::SimpleSequenceCreator > core::init::SimpleSequenceCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::SiteConstraintCreator > core::init::SiteConstraintCreator_registrator

static

ConstraintRegistrator< core::scoring::constraints::SiteConstraintResiduesCreator > core::init::SiteConstraintResiduesCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SmoothCenPairEnergyCreator > core::init::SmoothCenPairEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SmoothEnvEnergyCreator > core::init::SmoothEnvEnergyCreator_registrator

static

ResourceLoaderRegistrator< core::membrane::io::SpanFileLoaderCreator > core::init::SpanFileLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::membrane::io::SpanFileOptionsCreator > core::init::SpanFileOptionsCreator_registrator

static

EnergyMethodRegistrator< scoring::rna::StackElecEnergyCreator > core::init::StackElecEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SuckerEnergyCreator > core::init::SuckerEnergyCreator_registrator

static

EnergyMethodRegistrator< pack::interaction_graph::SurfaceEnergyCreator > core::init::SurfaceEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::packing::SurfEnergyCreator > core::init::SurfEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::packing::SurfVolEnergyCreator > core::init::SurfVolEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::sym_e::symECreator > core::init::symECreator_registrator

static

ResourceLoaderRegistrator< core::conformation::symmetry::SymmDataLoaderCreator > core::init::SymmDataLoaderCreator_registrator

static

ResourceOptionsRegistrator< core::conformation::symmetry::SymmDataOptionsCreator > core::init::SymmDataOptionsCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::SymmetricLigandEnergyCreator > core::init::SymmetricLigandEnergyCreator_registrator

static

basic::Tracer core::init::TR("core.init.score_function_corrections")

static

basic::Tracer core::init::TR("core.init")

static

Referenced by check_deprecated_flags(), check_score_function_sanity(), init(), init_correct_correction(), init_hbond_sp2_correction(), init_nonideal_correction(), init_random_number_generators(), init_source_revision(), locate_rosetta_database(), random_delay(), and report_application_command().

EnergyMethodRegistrator< scoring::methods::UnfoldedStateEnergyCreator > core::init::UnfoldedStateEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::vdwaals::VDW_EnergyCreator > core::init::VDW_EnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::WaterAdductHBondEnergyCreator > core::init::WaterAdductHBondEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::WaterAdductIntraEnergyCreator > core::init::WaterAdductIntraEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::cryst::XtalMLEnergyCreator > core::init::XtalMLEnergyCreator_registrator

static

EnergyMethodRegistrator< scoring::methods::YHHPlanarityEnergyCreator > core::init::YYHPlanarityEnergyCreator_registrator

static