pose_io.hh File Reference

method declarations for input/output functions for use with Pose More...

#include <core/types.hh>
#include <core/id/AtomID_Mask.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <basic/Tracer.fwd.hh>
#include <utility/io/ozstream.fwd.hh>
#include <utility/vector1.hh>
#include <iosfwd>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::io
	core::io::pdb

Functions
void	core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, Size &atom_number, std::ostream &out)
	Writes pdb data for the given residue, incrementing atom_number counter. More...
void	core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, std::ostream &out, Size start_atom_number=1)
	Writes pdb data for the given residue, beginning from the given atom number. More...
void	core::io::pdb::dump_bfactor_pdb (pose::Pose const &pose, id::AtomID_Map< Real > const &bfactor, std::ostream &out, std::string const &tag="1")
	Writes <pose> bfactor data. More...
void	core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, id::AtomID_Mask const &mask, std::string const &tag="1")
	Writes <pose> data. More...
void	core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, std::string const &tag="1")
	Writes <pose> data. More...
void	core::io::pdb::dump_pdb (pose::Pose const &pose, std::string const &filename, std::string const &tag="1")
	Writes the <pose> data to <filename> More...
void	core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::ostream &out, std::string const &tag="1")
	dump_pdb depending on visibility of tracer More...
void	core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::string const &filename, std::string const &tag="1")
	dump_pdb depending on visibility of tracer More...
void	core::io::pdb::extract_scores (pose::Pose const &pose, utility::io::ozstream &out)
	Write <pose> Energies information into an output stream (e.g. the tail of a pdb file) More...
void	core::io::pdb::extract_scores (core::pose::Pose const &pose, std::string const &filename, std::ostream &out)
void	core::io::pdb::dump_connect_info (pose::Pose const &pose, std::ostream &out)
	dump_connect_info Figure out CONECT fields for PDB output – atoms that are bonded in Rosetta but won't look that way to RASMOL or Pymol because of distance – useful for centroid poses. More...

Detailed Description

method declarations for input/output functions for use with Pose

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