core::pack::task::residue_selector::JumpUpstreamSelector Class Reference

The JumpUpstreamSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which lie upstream of a given jump in the FoldTree. The jump is specified by its integer index. More...

#include <JumpUpstreamSelector.hh>

Public Member Functions
	JumpUpstreamSelector ()
	JumpUpstreamSelector (int jump)
virtual	~JumpUpstreamSelector ()
virtual void	apply (core::pose::Pose const &pose, ResidueSubset &subset) const
	Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue() More...
virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &)
	Initialize any data members of this instance from an input tag and a DataMap object. More...
virtual std::string	get_name () const
void	set_jump (int jump)
	sets the string by which residues are selected More...
Public Member Functions inherited from core::pack::task::residue_selector::ResidueSelector
	ResidueSelector ()
virtual	~ResidueSelector ()

Static Public Member Functions
static std::string	class_name ()

Private Attributes
int	jump_

Detailed Description

The JumpUpstreamSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which lie upstream of a given jump in the FoldTree. The jump is specified by its integer index.

Constructor & Destructor Documentation

core::pack::task::residue_selector::JumpUpstreamSelector::JumpUpstreamSelector

(

)

core::pack::task::residue_selector::JumpUpstreamSelector::JumpUpstreamSelector

(

int

jump

)

References jump_.

core::pack::task::residue_selector::JumpUpstreamSelector::~JumpUpstreamSelector ( )

virtual

Member Function Documentation

void core::pack::task::residue_selector::JumpUpstreamSelector::apply ( core::pose::Pose const &  pose, ResidueSubset &  subset  ) const

virtual

Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue()

Implements core::pack::task::residue_selector::ResidueSelector.

References core::pose::Pose::fold_tree(), jump_, core::kinematics::FoldTree::partition_by_jump(), and core::pose::Pose::total_residue().

std::string core::pack::task::residue_selector::JumpUpstreamSelector::class_name ( )

static

Referenced by get_name(), and core::pack::task::residue_selector::JumpUpstreamSelectorCreator::keyname().

std::string core::pack::task::residue_selector::JumpUpstreamSelector::get_name ( ) const

virtual

Implements core::pack::task::residue_selector::ResidueSelector.

References class_name().

void core::pack::task::residue_selector::JumpUpstreamSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

virtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::pack::task::residue_selector::ResidueSelector.

References set_jump().

void core::pack::task::residue_selector::JumpUpstreamSelector::set_jump

(

int

jump

)

sets the string by which residues are selected

References jump_.

Referenced by parse_my_tag().

Member Data Documentation

int core::pack::task::residue_selector::JumpUpstreamSelector::jump_

private

Referenced by apply(), JumpUpstreamSelector(), and set_jump().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/pack/task/residue_selector/JumpUpstreamSelector.hh
• symlinks/rosetta/src/core/pack/task/residue_selector/JumpUpstreamSelector.cc