LeeRichards.hh File Reference

#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/scoring/packstat/types.hh>
#include <core/scoring/packstat/PackingScore.hh>
#include <core/pose/Pose.hh>
#include <numeric/xyzVector.hh>
#include <core/types.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/pointer/owning_ptr.hh>
#include <numeric/constants.hh>
#include <iostream>
#include <core/kinematics/Jump.hh>
#include <utility/vector1.hh>

Classes
struct	core::scoring::packstat::Accumulator
struct	core::scoring::packstat::AreaAccumulator
struct	core::scoring::packstat::LR_AtomData
struct	core::scoring::packstat::PerSphereAccumulator
struct	core::scoring::packstat::LR_MP_AtomData
struct	core::scoring::packstat::MultiProbePoseAccumulator
struct	core::scoring::packstat::MultiProbePerSphereAccumulator
struct	core::scoring::packstat::Point
struct	core::scoring::packstat::PointPair
struct	core::scoring::packstat::Circle
struct	core::scoring::packstat::Event
struct	core::scoring::packstat::Slice
struct	core::scoring::packstat::trace
struct	core::scoring::packstat::Array2D
struct	core::scoring::packstat::Octree2D
struct	core::scoring::packstat::LeeRichards

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring
	core::scoring::packstat

Typedefs
typedef utility::vector1< Event * >	core::scoring::packstat::Events
typedef utility::vector1< Slice * >	core::scoring::packstat::Slices
typedef utility::vector1< trace * >	core::scoring::packstat::traces
typedef utility::vector1 < Circle * >	core::scoring::packstat::Circles
typedef utility::vector1 < Event * >::iterator	core::scoring::packstat::EventIter
typedef utility::vector1 < Circle * >::iterator	core::scoring::packstat::CircleIter
typedef utility::vector1 < Slice * >::iterator	core::scoring::packstat::SliceIter
typedef utility::vector1 < trace * >::iterator	core::scoring::packstat::traceIter
typedef std::pair < core::id::AtomID, Real >	core::scoring::packstat::Arc
typedef utility::vector1< Arc >	core::scoring::packstat::Arcs
typedef utility::vector1< Arc > ::iterator	core::scoring::packstat::ArcIter
typedef utility::pointer::owning_ptr < Accumulator >	core::scoring::packstat::AccumulatorOP
typedef utility::pointer::owning_ptr < AreaAccumulator >	core::scoring::packstat::AreaAccumulatorOP
typedef utility::pointer::owning_ptr < PerSphereAccumulator >	core::scoring::packstat::PerSphereAccumulatorOP
typedef utility::pointer::owning_ptr < MultiProbePoseAccumulator >	core::scoring::packstat::MultiProbePoseAccumulatorOP
typedef utility::pointer::owning_ptr < MultiProbePerSphereAccumulator >	core::scoring::packstat::MultiProbePerSphereAccumulatorOP

Enumerations
enum	core::scoring::packstat::EventType { core::scoring::packstat::ENTER, core::scoring::packstat::EXIT, core::scoring::packstat::ISECT }

Functions
std::ostream &	core::scoring::packstat::operator<< (std::ostream &out, Circle &circle)
core::Real	core::scoring::packstat::compute_packing_score_leerichards (PosePackDataOP pd, core::Real slicesize, numeric::xyzVector< Real > plane=numeric::xyzVector< Real >(0, 0, 1))
core::Real	core::scoring::packstat::compute_surface_area_leerichards (Real &buried_area_out, PosePackDataOP pd, Real slicesize, Real pr, bool csa=false, numeric::xyzVector< Real > plane=numeric::xyzVector< Real >(0, 0, 0))
core::Real	core::scoring::packstat::compute_surface_area_leerichards (PosePackDataOP pd, Real slicesize, Real pr, bool csa=false, numeric::xyzVector< Real > plane=numeric::xyzVector< Real >(0, 0, 0))
XYZs	core::scoring::packstat::compute_surface_area_leerichards_deriv (PosePackDataOP pd, Real slicesize, Real pr, bool csa=false)
XYZs	core::scoring::packstat::check_surface_area_leerichards_deriv (PosePackDataOP pd, Real slicesize, Real pr, bool csa=false, Size max_num=10)