| append_residue(core::conformation::Residue const &rsd, core::Size &atom_index, core::pose::Pose const &pose, bool preserve_crystinfo=false) | core::io::pdb::FileData | |
| carbohydrate_residue_type_base_names | core::io::pdb::FileData | |
| chains | core::io::pdb::FileData | |
| Coords typedef | core::io::pdb::FileData | |
| create_working_data(utility::vector1< ResidueInformation > &rinfo) | core::io::pdb::FileData | |
| create_working_data(utility::vector1< ResidueInformation > &rinfo, FileDataOptions const &options) | core::io::pdb::FileData | |
| crystinfo | core::io::pdb::FileData | |
| dump_pdb(core::pose::Pose const &pose, std::ostream &out, std::string const &tag="", bool write_fold_tree=false) | core::io::pdb::FileData | static |
| dump_pdb(core::pose::Pose const &pose, std::string const &file_name, std::string const &tag="", bool write_fold_tree=false) | core::io::pdb::FileData | static |
| dump_pdb(core::pose::Pose const &pose, std::ostream &out, utility::vector1< core::Size > const &residue_indices, std::string const &tag="") | core::io::pdb::FileData | static |
| FileData() | core::io::pdb::FileData | |
| filename | core::io::pdb::FileData | |
| fill_header_records(std::vector< Record > &VR) const | core::io::pdb::FileData | |
| finalize_header_information() | core::io::pdb::FileData | |
| get_residue_information(core::pose::Pose const &pose, core::uint const seqpos, bool use_PDB=true, bool renumber_chains=false) const | core::io::pdb::FileData | |
| header | core::io::pdb::FileData | |
| header_information() const | core::io::pdb::FileData | |
| heterogen_names | core::io::pdb::FileData | |
| init_from_pose(core::pose::Pose const &pose) | core::io::pdb::FileData | |
| init_from_pose(core::pose::Pose const &pose, FileDataOptions const &options) | core::io::pdb::FileData | |
| init_from_pose(core::pose::Pose const &pose, utility::vector1< core::Size > const &residue_indices) | core::io::pdb::FileData | |
| initialize_header_information() | core::io::pdb::FileData | |
| link_map | core::io::pdb::FileData | |
| modeltag | core::io::pdb::FileData | |
| operator<<(std::ostream &os, FileData const &) | core::io::pdb::FileData | friend |
| parse_heterogen_name_for_carbohydrate_residues(std::string const &text) | core::io::pdb::FileData | |
| randomize_missing_coords(AtomInformation &ai) const | core::io::pdb::FileData | |
| remarks | core::io::pdb::FileData | |
| ResidueCoords typedef | core::io::pdb::FileData | |
| ResidueTemps typedef | core::io::pdb::FileData | |
| store_header_record(Record &R) | core::io::pdb::FileData | |
| store_heterogen_names(std::string const &hetID, std::string &text) | core::io::pdb::FileData | |
| store_link_record(Record &record) | core::io::pdb::FileData | |
| Strings typedef | core::io::pdb::FileData | |
| Temps typedef | core::io::pdb::FileData | |
| update_atom_information_based_on_occupancy(AtomInformation &ai, FileDataOptions const &options, std::string const &resid) const | core::io::pdb::FileData | |
| ~FileData() | core::io::pdb::FileData | |
1.8.7