ScoreFunctionFactory.cc File Reference

#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/scoring/DockingScoreFunction.hh>
#include <core/scoring/MinScoreScoreFunction.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>
#include <basic/options/keys/mistakes.OptionKeys.gen.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <sstream>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring

Functions
std::string const	core::scoring::TALARIS_2013 ("talaris2013")
std::string const	core::scoring::PRE_TALARIS_2013_STANDARD_WTS ("pre_talaris_2013_standard")
std::string const	core::scoring::CENTROID_WTS ("cen_std")
std::string const	core::scoring::SOFT_REP_WTS ("soft_rep")
std::string const	core::scoring::SOFT_REP_DESIGN_WTS ("soft_rep_design")
std::string const	core::scoring::DNA_INT_WTS ("dna_no_gb")
std::string const	core::scoring::DNA_INT_WTS_GB ("dna")
std::string const	core::scoring::MM_STD_WTS ("mm_std")
std::string const	core::scoring::RNA_LORES_WTS ("farna/rna_lores")
std::string const	core::scoring::RNA_HIRES_WTS ("farna/rna_hires")
std::string const	core::scoring::RNA_LORES_PLUS_HIRES_WTS ("farna/rna_lores_plus_hires")
std::string const	core::scoring::MEMB_HIGHRES_WTS ("membrane_highres")
std::string const	core::scoring::SCORE12_PATCH ("score12")
std::string const	core::scoring::SCORE13 ("score13")
std::string const	core::scoring::DOCK_PATCH ("docking")
std::string const	core::scoring::DOCK_LOW_PATCH ("docking_cen")
core::scoring::ScoreFunctionOP	core::scoring::getScoreFunction (bool const is_fullatom=true)
	A helper function which returns a scoring function owning pointer according to the user's command line parameters -score:weights and -score:patch By default it returns weights=standard and patch=score12 for fullatom, and weights=cen_std and patch="" for centroid. More...
core::scoring::ScoreFunctionOP	core::scoring::getScoreFunctionLegacy (std::string pre_talaris_2013_weight_set, std::string pre_talaris_2013_patch_file="")
	A helper function that either returns a ScoreFunctionOP created by getScoreFunction() or the one specified by the protocol which is activated by the -restore_pre_talaris_2013_behavior flag. The purpose of this function is to preserve legacy behavior for the sake of reproducibility and so that a record of the old behavior is still preserved in the code to ease the process of reverting the change to getScoreFunction if that were the wrong behavior. More...
std::string	core::scoring::getScoreFunctionName (bool const is_fullatom=true)
	use the logic of getScoreFunction to get the name. The name format is <weights_tag>[_<patch_tag> ... ] More...

Variables
static basic::Tracer	tr ("core.scoring.ScoreFunctionFactory")

Variable Documentation

basic::Tracer tr("core.scoring.ScoreFunctionFactory")

static