core::import_pose::pose_stream::PoseInputStream Class Reference

#include <PoseInputStream.hh>

Public Member Functions
	PoseInputStream ()
virtual	~PoseInputStream ()
virtual bool	has_another_pose ()=0
virtual void	reset ()=0
virtual void	fill_pose (core::pose::Pose &, core::chemical::ResidueTypeSet const &)=0
virtual void	fill_pose (core::pose::Pose &)=0
virtual utility::vector1 < core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Constructor & Destructor Documentation

core::import_pose::pose_stream::PoseInputStream::PoseInputStream ( )

inline

virtual core::import_pose::pose_stream::PoseInputStream::~PoseInputStream ( )

inlinevirtual

Member Function Documentation

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose ( core::pose::Pose &  , core::chemical::ResidueTypeSet const &    )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose ( core::pose::Pose &  )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

utility::vector1< core::pose::PoseOP > core::import_pose::pose_stream::PoseInputStream::get_all_poses ( core::chemical::ResidueTypeSet const &  residue_set )

virtual

Reimplemented in core::import_pose::pose_stream::PDBPoseInputStream.

References fill_pose(), has_another_pose(), and reset().

virtual bool core::import_pose::pose_stream::PoseInputStream::has_another_pose ( )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

void core::import_pose::pose_stream::PoseInputStream::preprocess_pose

(

core::pose::Pose &

pose

)

Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

References james::debug, core::pose::initialize_disulfide_bonds(), basic::options::option, and option.

Referenced by core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::PDBPoseInputStream::fill_pose(), and core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose().

virtual void core::import_pose::pose_stream::PoseInputStream::reset ( )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/import_pose/pose_stream/PoseInputStream.hh
• symlinks/rosetta/src/core/import_pose/pose_stream/PoseInputStream.cc