ScoringSchemeFactory.cc File Reference

Factory for creating various types of ScoringSchemes for use in sequence alignment. More...

#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringSchemeFactory.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/sequence/DPScoringScheme.hh>
#include <core/sequence/L1ScoringScheme.hh>
#include <core/sequence/ProfSimScoringScheme.hh>
#include <core/sequence/CompassScoringScheme.hh>
#include <core/sequence/CompositeScoringScheme.hh>
#include <core/sequence/ChemicalShiftScoringScheme.hh>
#include <utility/exit.hh>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::sequence

Detailed Description

Factory for creating various types of ScoringSchemes for use in sequence alignment.

Author

James Thompson