#include <SilentFilePoseInputStream.hh>

Public Member Functions
	SilentFilePoseInputStream ()

	SilentFilePoseInputStream (utility::vector1< FileName > fns)

	SilentFilePoseInputStream (std::string const &fn)

	SilentFilePoseInputStream (utility::vector1< FileName > fns, bool order_by_energy)

	SilentFilePoseInputStream (utility::vector1< FileName > fns, core::Real energy_cut)

	SilentFilePoseInputStream (utility::vector1< FileName > fns, utility::vector1< string > input_tags)

	SilentFilePoseInputStream (utility::vector1< FileName > fns, utility::vector1< string > input_tags, core::Real energy_cut)

void	set_silent_file_data (core::io::silent::SilentFileDataOP &sfd)

void	set_record_source (bool const &setting)

	~SilentFilePoseInputStream ()

void	renumber_decoys (bool const setting)

void	tags (utility::vector1< string > tags)

void	filenames (utility::vector1< FileName > filenames)

core::Real	energy_cut () const

bool	renumber_decoys () const

utility::vector1< string >	tags () const

utility::vector1< FileName >	filenames () const

void	set_order_by_energy (bool const &setting)

virtual bool	has_another_pose ()

virtual void	reset ()

virtual void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set)

virtual void	fill_pose (core::pose::Pose &)

core::io::silent::SilentStructOP	next_struct ()

Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()

virtual	~PoseInputStream ()

virtual utility::vector1 < core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)

void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Types
typedef std::string	string

typedef utility::file::FileName	FileName

Private Member Functions
void	read_all_files_ ()

Private Attributes
utility::vector1< string >	tags_

utility::vector1< FileName >	filenames_

core::io::silent::SilentFileDataOP	sfd_

core::io::silent::SilentFileData::iterator	current_position_

bool	renumber_decoys_

core::Real	energy_cut_

bool	order_by_energy_

bool	record_source_

Member Typedef Documentation

typedef utility::file::FileName core::import_pose::pose_stream::SilentFilePoseInputStream::FileName

private

typedef std::string core::import_pose::pose_stream::SilentFilePoseInputStream::string

private

Constructor & Destructor Documentation

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( )

inline

References sfd_.

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( utility::vector1< FileName > fns )

inline

References filenames(), and sfd_.

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( std::string const & fn )

inline

References filenames(), and sfd_.

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName >	fns,
		bool	order_by_energy
	)

inline

References filenames(), and sfd_.

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName >	fns,
		core::Real	energy_cut
	)

inline

References filenames(), and sfd_.

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName >	fns,
		utility::vector1< string >	input_tags
	)

inline

References filenames(), sfd_, and tags().

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName >	fns,
		utility::vector1< string >	input_tags,
		core::Real	energy_cut
	)

inline

References filenames(), sfd_, and tags().

core::import_pose::pose_stream::SilentFilePoseInputStream::~SilentFilePoseInputStream ( )

inline

Member Function Documentation

core::Real core::import_pose::pose_stream::SilentFilePoseInputStream::energy_cut ( ) const

References energy_cut_.

Referenced by read_all_files_().

void core::import_pose::pose_stream::SilentFilePoseInputStream::filenames ( utility::vector1< FileName > filenames )

References current_position_, filenames(), filenames_, read_all_files_(), and sfd_.

utility::vector1< FileName > core::import_pose::pose_stream::SilentFilePoseInputStream::filenames ( ) const

References filenames_.

Referenced by filenames(), and SilentFilePoseInputStream().

void core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		core::chemical::ResidueTypeSet const &	residue_set
	)

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_position_, core::pose::Pose::data(), run::debug, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, option, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), basic::datacache::BasicDataCache::set(), core::pose::setPoseExtraScores(), core::import_pose::pose_stream::tr, and utility_exit_with_message.

void core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose ( core::pose::Pose & pose )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_position_, core::pose::Pose::data(), run::debug, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, option, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), basic::datacache::BasicDataCache::set(), core::pose::setPoseExtraScores(), core::import_pose::pose_stream::tr, and utility_exit_with_message.

bool core::import_pose::pose_stream::SilentFilePoseInputStream::has_another_pose ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_position_, and sfd_.

Referenced by fill_pose(), and next_struct().

core::io::silent::SilentStructOP core::import_pose::pose_stream::SilentFilePoseInputStream::next_struct ( )

References current_position_, has_another_pose(), and utility_exit_with_message.

void core::import_pose::pose_stream::SilentFilePoseInputStream::read_all_files_ ( )

private

References energy_cut(), file_exists(), filenames_, order_by_energy_, record_source_, renumber_decoys(), sfd_, tags_, and core::import_pose::pose_stream::tr.

Referenced by filenames().

void core::import_pose::pose_stream::SilentFilePoseInputStream::renumber_decoys ( bool const setting )

References renumber_decoys_.

bool core::import_pose::pose_stream::SilentFilePoseInputStream::renumber_decoys ( ) const

References renumber_decoys_.

Referenced by read_all_files_(), and set_silent_file_data().

void core::import_pose::pose_stream::SilentFilePoseInputStream::reset ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_position_, and sfd_.

void core::import_pose::pose_stream::SilentFilePoseInputStream::set_order_by_energy ( bool const & setting )

References current_position_, order_by_energy_, and sfd_.

void core::import_pose::pose_stream::SilentFilePoseInputStream::set_record_source ( bool const & setting )

References record_source_.

void core::import_pose::pose_stream::SilentFilePoseInputStream::set_silent_file_data ( core::io::silent::SilentFileDataOP & sfd )

References current_position_, filenames_, order_by_energy_, renumber_decoys(), sfd_, tags_, and core::import_pose::pose_stream::tr.

void core::import_pose::pose_stream::SilentFilePoseInputStream::tags ( utility::vector1< string > tags )

References tags(), and tags_.

utility::vector1< std::string > core::import_pose::pose_stream::SilentFilePoseInputStream::tags ( ) const

References tags_.

Referenced by SilentFilePoseInputStream(), and tags().

Member Data Documentation

core::io::silent::SilentFileData::iterator core::import_pose::pose_stream::SilentFilePoseInputStream::current_position_

private

Referenced by filenames(), fill_pose(), has_another_pose(), next_struct(), reset(), set_order_by_energy(), and set_silent_file_data().

core::Real core::import_pose::pose_stream::SilentFilePoseInputStream::energy_cut_

private

Referenced by energy_cut().

utility::vector1< FileName > core::import_pose::pose_stream::SilentFilePoseInputStream::filenames_

private

Referenced by filenames(), read_all_files_(), and set_silent_file_data().

bool core::import_pose::pose_stream::SilentFilePoseInputStream::order_by_energy_

private

Referenced by read_all_files_(), set_order_by_energy(), and set_silent_file_data().

bool core::import_pose::pose_stream::SilentFilePoseInputStream::record_source_

private

Referenced by read_all_files_(), and set_record_source().

bool core::import_pose::pose_stream::SilentFilePoseInputStream::renumber_decoys_

private

Referenced by renumber_decoys().

core::io::silent::SilentFileDataOP core::import_pose::pose_stream::SilentFilePoseInputStream::sfd_

private

Referenced by filenames(), has_another_pose(), read_all_files_(), reset(), set_order_by_energy(), set_silent_file_data(), and SilentFilePoseInputStream().

utility::vector1< string > core::import_pose::pose_stream::SilentFilePoseInputStream::tags_

private

Referenced by read_all_files_(), set_silent_file_data(), and tags().

The documentation for this class was generated from the following files:

symlinks/rosetta/src/core/import_pose/pose_stream/SilentFilePoseInputStream.hh
symlinks/rosetta/src/core/import_pose/pose_stream/SilentFilePoseInputStream.cc

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation