util.cc File Reference

Utility methods for defining membranes and membrane embeddings. More...

#include <core/membrane/geometry/util.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/membrane/Exceptions.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <basic/resource_manager/ResourceManager.hh>
#include <basic/resource_manager/util.hh>
#include <core/pose/Pose.hh>
#include <core/types.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/tag/Tag.hh>
#include <numeric/conversions.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <basic/Tracer.hh>
#include <algorithm>
#include <string>
#include <cstdlib>
#include <cmath>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::membrane
	core::membrane::geometry

Macros
#define	INCLUDED_core_membrane_geometry_util_cc

Functions
bool	core::membrane::geometry::virtual_rsd_equal (core::conformation::ResidueOP rsd1, core::conformation::ResidueOP rsd2)
	Virtual residue Equals. More...
core::Real	core::membrane::geometry::get_mpDepth (core::Vector normal, core::Vector center, core::conformation::Residue rsd)
	Get Residue Depth in Membrane. More...
bool	core::membrane::geometry::check_spanning (core::pose::Pose const &pose, core::Vector const &normal, core::Vector const &center, SpanningTopologyOP topology)
	Check Membrane Spanning. More...
numeric::xyzVector< core::Real >	core::membrane::geometry::center_of_mass (pose::Pose const &pose, int const start, int const stop)
	Center of Mass. More...
int	core::membrane::geometry::residue_center_of_mass (pose::Pose const &pose, int const start, int const stop)
	Residue Center of Mass. More...
int	core::membrane::geometry::return_nearest_residue (pose::Pose const &pose, int const begin, int const end, Vector center)
	Return nearest residue. More...

Variables
static basic::Tracer	TR ("core.membrane.geometry.util")

Detailed Description

Utility methods for defining membranes and membrane embeddings.

Helps to check for internal errors, bounds, and object equality

Author

Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Macro Definition Documentation

#define INCLUDED_core_membrane_geometry_util_cc

Variable Documentation

basic::Tracer TR("core.membrane.geometry.util")

static