core::scoring::rna::RNA_TorsionPotential Class Reference

#include <RNA_TorsionPotential.hh>

Public Member Functions
	RNA_TorsionPotential ()
virtual	~RNA_TorsionPotential ()
Real	eval_intrares_energy (core::conformation::Residue const &rsd, pose::Pose const &pose) const
Real	residue_pair_energy (core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, pose::Pose const &pose) const
void	eval_atom_derivative (id::AtomID const &id, pose::Pose const &pose, EnergyMap const &weights, Vector &F1, Vector &F2) const
void	set_verbose (bool const setting)

Private Member Functions
bool	check_intra_residue (id::TorsionID const &torsion_id, pose::Pose const &pose, Size const seqpos) const
void	init_potentials_from_rna_torsion_database_files ()
void	initialize_potential_from_file (core::scoring::func::FuncOP &func, std::string const &filename)
void	init_fade_functions ()
bool	should_score_torsion (core::pose::Pose const &pose, core::id::TorsionID const &torsion_id) const
bool	get_f1_f2 (core::id::TorsionID const &torsion_id, core::pose::Pose const &pose, core::id::AtomID const &id, Vector &f1, Vector &f2) const
void	Output_boolean (std::string const &tag, bool boolean) const
bool	is_cutpoint_closed_atom (core::conformation::Residue const &rsd, core::id::AtomID const &id) const
void	print_torsion_info (core::pose::Pose const &pose, id::TorsionID const &torsion_id) const
bool	is_cutpoint_closed_torsion (core::pose::Pose const &pose, core::id::TorsionID const &torsion_id) const

Private Attributes
std::string	path_to_torsion_files_
bool const	rna_tight_torsions_
Real const	delta_fade_
Real const	alpha_fade_
core::scoring::func::FuncOP	alpha_potential_
core::scoring::func::FuncOP	beta_potential_
core::scoring::func::FuncOP	gamma_potential_
core::scoring::func::FuncOP	delta_north_potential_
core::scoring::func::FuncOP	delta_south_potential_
core::scoring::func::FuncOP	epsilon_north_potential_
core::scoring::func::FuncOP	epsilon_south_potential_
core::scoring::func::FuncOP	zeta_alpha_sc_minus_potential_
core::scoring::func::FuncOP	zeta_alpha_sc_plus_potential_
core::scoring::func::FuncOP	zeta_alpha_ap_potential_
core::scoring::func::FuncOP	nu2_north_potential_
core::scoring::func::FuncOP	nu2_south_potential_
core::scoring::func::FuncOP	nu1_north_potential_
core::scoring::func::FuncOP	nu1_south_potential_
core::scoring::func::FuncOP	chi_north_potential_others_
core::scoring::func::FuncOP	chi_south_potential_others_
core::scoring::func::FuncOP	chi_north_potential_guanosine_
core::scoring::func::FuncOP	chi_south_potential_guanosine_
core::scoring::func::FuncOP	chi_purine_north_potential_
core::scoring::func::FuncOP	chi_purine_south_potential_
core::scoring::func::FuncOP	chi_pyrimidine_north_potential_
core::scoring::func::FuncOP	chi_pyrimidine_south_potential_
core::scoring::func::FuncOP	o2h_north_potential_
core::scoring::func::FuncOP	o2h_south_potential_
core::scoring::func::FuncOP	chi_potential_syn_guanosine_bonus_
core::scoring::func::FuncOP	fade_delta_north_
core::scoring::func::FuncOP	fade_delta_south_
core::scoring::func::FuncOP	fade_alpha_sc_minus_
core::scoring::func::FuncOP	fade_alpha_sc_plus_
core::scoring::func::SumFuncOP	fade_alpha_ap_
bool const	skip_chainbreak_torsions_
bool	verbose_
bool	use_new_potential_
bool const	use_2prime_OH_potential_
Real const	syn_G_potential_bonus_
chemical::rna::RNA_FittedTorsionInfoOP	rna_fitted_torsion_info_

Constructor & Destructor Documentation

core::scoring::rna::RNA_TorsionPotential::RNA_TorsionPotential

(

)

References chemical, basic::database::full_name(), init_fade_functions(), init_potentials_from_rna_torsion_database_files(), basic::options::option, option, options, path_to_torsion_files_, rna, basic::options::OptionKeys::score::rna_torsion_potential, rna_torsion_skip_chainbreak, score, syn_G_potential_bonus, core::scoring::TR, use_2prime_OH_potential, use_new_potential_, user, and verbose_.

core::scoring::rna::RNA_TorsionPotential::~RNA_TorsionPotential ( )

virtual

Member Function Documentation

bool core::scoring::rna::RNA_TorsionPotential::check_intra_residue ( id::TorsionID const &  torsion_id, pose::Pose const &  pose, Size const  seqpos  ) const

private

References core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), and core::id::AtomID::rsd().

void core::scoring::rna::RNA_TorsionPotential::eval_atom_derivative	(	id::AtomID const &	id,
		pose::Pose const &	pose,
		EnergyMap const &	weights,
		Vector &	F1,
		Vector &	F2
	)		const

References core::chemical::rna::ALPHA, core::chemical::rna::RNA_FittedTorsionInfo::alpha_aform(), alpha_potential_, core::id::BB, beta, core::chemical::rna::BETA, beta_potential_, core::chemical::rna::CHI, core::id::CHI, chi_north_potential_guanosine_, chi_north_potential_others_, core::chemical::rna::RNA_ResidueType::chi_number_pseudoalpha(), core::chemical::rna::RNA_ResidueType::chi_number_pseudobeta(), core::chemical::rna::RNA_ResidueType::chi_number_pseudoepsilon(), core::chemical::rna::RNA_ResidueType::chi_number_pseudogamma(), core::chemical::rna::RNA_ResidueType::chi_number_pseudozeta(), chi_potential_syn_guanosine_bonus_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, core::chemical::rna::DELTA, delta_north_potential_, delta_south_potential_, epsilon, core::chemical::rna::EPSILON, epsilon_north_potential_, epsilon_south_potential_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, core::chemical::rna::GAMMA, gamma_potential_, get_f1_f2(), core::chemical::ResidueType::is_RNA(), core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), core::chemical::na_rad, core::chemical::na_rgu, nres, core::chemical::rna::NU1, nu1_north_potential_, nu1_south_potential_, core::chemical::rna::NU2, nu2_north_potential_, nu2_south_potential_, core::chemical::rna::NUM_RNA_MAINCHAIN_TORSIONS(), core::chemical::rna::O2H, o2h_north_potential_, o2h_south_potential_, principal_angle_degrees(), numeric::principal_angle_degrees(), radians(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), rna_fitted_torsion_info_, core::scoring::rna_torsion, core::chemical::ResidueType::RNA_type(), syn_G_potential_bonus_, core::pose::Pose::total_residue(), core::conformation::Residue::type(), use_2prime_OH_potential_, use_new_potential_, core::chemical::rna::ZETA, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::eval_atom_derivative().

Real core::scoring::rna::RNA_TorsionPotential::eval_intrares_energy	(	core::conformation::Residue const &	rsd,
		pose::Pose const &	pose
	)		const

References core::conformation::Residue::aa(), core::chemical::rna::RNA_FittedTorsionInfo::alpha_aform(), alpha_potential_, core::id::BB, beta, core::chemical::rna::BETA, beta_potential_, core::chemical::rna::CHI, core::id::CHI, core::conformation::Residue::chi(), chi_north_potential_guanosine_, chi_north_potential_others_, core::chemical::rna::RNA_ResidueType::chi_number_pseudoalpha(), core::chemical::rna::RNA_ResidueType::chi_number_pseudobeta(), core::chemical::rna::RNA_ResidueType::chi_number_pseudoepsilon(), core::chemical::rna::RNA_ResidueType::chi_number_pseudogamma(), core::chemical::rna::RNA_ResidueType::chi_number_pseudozeta(), chi_potential_syn_guanosine_bonus_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, core::chemical::rna::DELTA, delta_north_potential_, delta_south_potential_, epsilon_north_potential_, epsilon_south_potential_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, core::chemical::rna::GAMMA, gamma_potential_, core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), core::chemical::na_rad, core::chemical::na_rgu, core::chemical::rna::NU1, nu1_north_potential_, nu1_south_potential_, core::chemical::rna::NU2, nu2_north_potential_, nu2_south_potential_, core::chemical::rna::NUM_RNA_MAINCHAIN_TORSIONS(), core::chemical::rna::O2H, o2h_north_potential_, o2h_south_potential_, numeric::principal_angle_degrees(), principal_angle_degrees(), rna_fitted_torsion_info_, core::chemical::ResidueType::RNA_type(), score, core::conformation::Residue::seqpos(), should_score_torsion(), syn_G_potential_bonus_, core::scoring::TR, core::conformation::Residue::type(), use_2prime_OH_potential_, use_new_potential_, verbose_, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::eval_intrares_energy().

bool core::scoring::rna::RNA_TorsionPotential::get_f1_f2 ( core::id::TorsionID const &  torsion_id, core::pose::Pose const &  pose, core::id::AtomID const &  id, Vector &  f1, Vector &  f2  ) const

private

References core::pose::Pose::conformation(), numeric::deriv::dihedral_p1_cosine_deriv(), numeric::deriv::dihedral_p2_cosine_deriv(), core::pose::Pose::residue_type(), core::id::TorsionID::rsd(), should_score_torsion(), core::scoring::TR, and verbose_.

Referenced by eval_atom_derivative().

void core::scoring::rna::RNA_TorsionPotential::init_fade_functions ( )

private

References alpha_fade_, core::chemical::rna::RNA_FittedTorsionInfo::delta_cutoff(), delta_fade_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, and rna_fitted_torsion_info_.

Referenced by RNA_TorsionPotential().

void core::scoring::rna::RNA_TorsionPotential::init_potentials_from_rna_torsion_database_files ( )

private

References alpha_potential_, beta_potential_, chi_north_potential_guanosine_, chi_north_potential_others_, chi_potential_syn_guanosine_bonus_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, delta_north_potential_, delta_south_potential_, epsilon_north_potential_, epsilon_south_potential_, utility::file::file_exists(), basic::database::full_name(), gamma_potential_, initialize_potential_from_file(), nu1_north_potential_, nu1_south_potential_, nu2_north_potential_, nu2_south_potential_, o2h_north_potential_, o2h_south_potential_, path_to_torsion_files_, syn_G_potential_bonus_, use_new_potential_, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by RNA_TorsionPotential().

void core::scoring::rna::RNA_TorsionPotential::initialize_potential_from_file ( core::scoring::func::FuncOP &  func, std::string const &  filename  )

private

References utility::file::file_exists(), basic::database::full_name(), path_to_torsion_files_, and utility_exit_with_message.

Referenced by init_potentials_from_rna_torsion_database_files().

bool core::scoring::rna::RNA_TorsionPotential::is_cutpoint_closed_atom ( core::conformation::Residue const &  rsd, core::id::AtomID const &  id  ) const

private

References core::chemical::ResidueType::atom_name(), and core::conformation::Residue::type().

Referenced by should_score_torsion().

bool core::scoring::rna::RNA_TorsionPotential::is_cutpoint_closed_torsion ( core::pose::Pose const &  pose, core::id::TorsionID const &  torsion_id  ) const

private

References core::chemical::rna::ALPHA, core::id::BB, core::chemical::rna::BETA, core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::chemical::rna::DELTA, core::chemical::rna::EPSILON, core::chemical::rna::GAMMA, core::conformation::Residue::has_variant_type(), core::pose::Pose::residue(), core::id::TorsionID::rsd(), core::id::TorsionID::torsion(), core::pose::Pose::total_residue(), core::id::TorsionID::type(), utility_exit_with_message, and core::chemical::rna::ZETA.

Referenced by should_score_torsion().

void core::scoring::rna::RNA_TorsionPotential::Output_boolean ( std::string const &  tag, bool  boolean  ) const

private

References core::scoring::TR.

Referenced by should_score_torsion().

void core::scoring::rna::RNA_TorsionPotential::print_torsion_info ( core::pose::Pose const &  pose, id::TorsionID const &  torsion_id  ) const

private

References core::chemical::ResidueType::atom_name(), core::conformation::Residue::atom_type(), core::conformation::Residue::atom_type_index(), core::conformation::Residue::atomic_charge(), core::id::AtomID::atomno(), core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), core::pose::Pose::residue(), core::id::AtomID::rsd(), core::scoring::TR, and core::conformation::Residue::type().

Referenced by should_score_torsion().

Real core::scoring::rna::RNA_TorsionPotential::residue_pair_energy	(	core::conformation::Residue const &	rsd1,
		core::conformation::Residue const &	rsd2,
		pose::Pose const &	pose
	)		const

References core::chemical::rna::ALPHA, alpha_potential_, core::id::BB, core::chemical::rna::DELTA, epsilon, core::chemical::rna::EPSILON, epsilon_north_potential_, epsilon_south_potential_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), numeric::principal_angle_degrees(), score, core::conformation::Residue::seqpos(), should_score_torsion(), core::scoring::TR, verbose_, core::chemical::rna::ZETA, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::residue_pair_energy().

void core::scoring::rna::RNA_TorsionPotential::set_verbose ( bool const  setting )

inline

References verbose_.

bool core::scoring::rna::RNA_TorsionPotential::should_score_torsion ( core::pose::Pose const &  pose, core::id::TorsionID const &  torsion_id  ) const

private

References core::id::AtomID::atomno(), core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), is_cutpoint_closed_atom(), is_cutpoint_closed_torsion(), core::conformation::Residue::is_RNA(), core::pose::rna::is_rna_chainbreak(), core::conformation::Residue::is_virtual(), Output_boolean(), print_torsion_info(), core::pose::Pose::residue(), core::id::AtomID::rsd(), runtime_assert, core::conformation::Residue::seqpos(), skip_chainbreak_torsions_, core::scoring::TR, utility_exit_with_message, and verbose_.

Referenced by eval_intrares_energy(), get_f1_f2(), and residue_pair_energy().

Member Data Documentation

Real const core::scoring::rna::RNA_TorsionPotential::alpha_fade_

private

Referenced by init_fade_functions().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::alpha_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::beta_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_north_potential_guanosine_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_north_potential_others_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_potential_syn_guanosine_bonus_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_purine_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_purine_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_pyrimidine_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_pyrimidine_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_south_potential_guanosine_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_south_potential_others_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

Real const core::scoring::rna::RNA_TorsionPotential::delta_fade_

private

Referenced by init_fade_functions().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::delta_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::delta_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::epsilon_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::epsilon_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::func::SumFuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_ap_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_sc_minus_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_sc_plus_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_delta_north_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_delta_south_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::gamma_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::nu1_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::nu1_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::nu2_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::nu2_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::o2h_north_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::o2h_south_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

std::string core::scoring::rna::RNA_TorsionPotential::path_to_torsion_files_

private

Referenced by init_potentials_from_rna_torsion_database_files(), initialize_potential_from_file(), and RNA_TorsionPotential().

chemical::rna::RNA_FittedTorsionInfoOP core::scoring::rna::RNA_TorsionPotential::rna_fitted_torsion_info_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_fade_functions().

bool const core::scoring::rna::RNA_TorsionPotential::rna_tight_torsions_

private

bool const core::scoring::rna::RNA_TorsionPotential::skip_chainbreak_torsions_

private

Referenced by should_score_torsion().

Real const core::scoring::rna::RNA_TorsionPotential::syn_G_potential_bonus_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

bool const core::scoring::rna::RNA_TorsionPotential::use_2prime_OH_potential_

private

Referenced by eval_atom_derivative(), and eval_intrares_energy().

bool core::scoring::rna::RNA_TorsionPotential::use_new_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and RNA_TorsionPotential().

bool core::scoring::rna::RNA_TorsionPotential::verbose_

private

Referenced by eval_intrares_energy(), get_f1_f2(), residue_pair_energy(), RNA_TorsionPotential(), set_verbose(), and should_score_torsion().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_ap_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_sc_minus_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::func::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_sc_plus_potential_

private

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

---

The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/scoring/rna/RNA_TorsionPotential.hh
• symlinks/rosetta/src/core/scoring/rna/RNA_TorsionPotential.cc