Aligner.cc File Reference

class definition for a class that aligns two Sequence objects using dynamic programming algorithms. More...

#include <core/types.hh>
#include <core/sequence/Aligner.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <string>
#include <utility/exit.hh>
#include <utility/vector1.hh>
#include <core/sequence/ScoringScheme.fwd.hh>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::sequence

Detailed Description

class definition for a class that aligns two Sequence objects using dynamic programming algorithms.

Author

James Thompson