| __pad0__ | core::scoring::methods::IntermolEnergy | |
| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
| clone() const | core::scoring::methods::IntermolEnergy | virtual |
| color_connected(utility::vector1< Size > &colors, utility::vector1< utility::vector1< Size > > const &chains_connected, Size const n, Size const current_color) const | core::scoring::methods::IntermolEnergy | private |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::methods::IntermolEnergy | virtual |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::methods::IntermolEnergy | virtual |
| get_chains_connected(pose::Pose const &pose, utility::vector1< utility::vector1< Size > > &chains_connected) const | core::scoring::methods::IntermolEnergy | private |
| get_num_chains_frozen(pose::Pose const &pose) const | core::scoring::methods::IntermolEnergy | private |
| get_number_of_connected_subgraphs(utility::vector1< utility::vector1< Size > > const &chains_connected) const | core::scoring::methods::IntermolEnergy | private |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::methods::IntermolEnergy | inlinevirtual |
| IntermolEnergy() | core::scoring::methods::IntermolEnergy | |
| log_conc_ | core::scoring::methods::IntermolEnergy | private |
| method_type() const | core::scoring::methods::WholeStructureEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| parent typedef | core::scoring::methods::WholeStructureEnergy | |
| penalty_at_1M_ | core::scoring::methods::IntermolEnergy | private |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| version() const | core::scoring::methods::IntermolEnergy | privatevirtual |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | virtual |
| ~WholeStructureEnergy() | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
1.8.7