core::io::pdb::PDB_DReaderOptions Class Reference

#include <pdb_dynamic_reader_options.hh>

Public Member Functions
	PDB_DReaderOptions ()
virtual	~PDB_DReaderOptions ()
virtual void	parse_my_tag (utility::tag::TagCOP tag)
virtual std::string	type () const
bool	new_chain_order () const
bool	obey_ENDMDL () const
bool	read_pdb_header () const
bool	read_link_records () const
void	set_new_chain_order (bool setting)
void	set_obey_ENDMDL (bool setting)
void	set_read_pdb_header (bool setting)
void	set_read_link_records (bool setting)
Public Member Functions inherited from core::io::pdb::FileDataOptions
	FileDataOptions ()
virtual	~FileDataOptions ()
std::string	check_if_residues_are_Ntermini () const
std::string	check_if_residues_are_Ctermini () const
bool	exit_if_missing_heavy_atoms () const
bool	ignore_unrecognized_res () const
bool	ignore_waters () const
bool	ignore_zero_occupancy () const
bool	keep_input_protonation_state () const
bool	preserve_header () const
bool	preserve_crystinfo () const
bool	missing_dens_as_jump () const
bool	randomize_missing_coords () const
bool	remember_unrecognized_res () const
bool	remember_unrecognized_water () const
bool	write_pdb_link_records () const
std::string const &	chains_whose_residues_are_separate_chemical_entities () const
void	set_check_if_residues_are_Ntermini (std::string check_if_residues_are_Ntermini)
void	set_check_if_residues_are_Ctermini (std::string check_if_residues_are_Ctermini)
void	set_exit_if_missing_heavy_atoms (bool exit_if_missing_heavy_atoms)
void	set_ignore_unrecognized_res (bool ignore_unrecognized_res)
void	set_ignore_waters (bool ignore_waters)
void	set_ignore_zero_occupancy (bool ignore_zero_occupancy)
void	set_keep_input_protonation_state (bool keep_input_protonation_state)
void	set_preserve_header (bool preserve_header)
void	set_preserve_crystinfo (bool preserve_crystinfo)
void	set_missing_dens_as_jump (bool missing_dens_as_jump)
void	set_randomize_missing_coords (bool randomize_missing_coords)
void	set_remember_unrecognized_res (bool remember_unrecognized_res)
void	set_remember_unrecognized_water (bool remember_unrecognized_water)
void	set_write_pdb_link_records (bool setting)
void	set_chains_whose_residues_are_separate_chemical_entities (std::string const &setting)

Private Member Functions
void	init_from_options ()
	Assigns user specified values to primitive members using command line options. More...

Private Attributes
bool	new_chain_order_
bool	obey_ENDMDL_
bool	read_pdb_header_
bool	read_link_records_

Constructor & Destructor Documentation

core::io::pdb::PDB_DReaderOptions::PDB_DReaderOptions

(

)

References init_from_options().

core::io::pdb::PDB_DReaderOptions::~PDB_DReaderOptions ( )

virtual

Member Function Documentation

void core::io::pdb::PDB_DReaderOptions::init_from_options ( )

private

Assigns user specified values to primitive members using command line options.

References in::file::new_chain_order, in::file::obey_ENDMDL, option, run::preserve_header, in::file::read_pdb_link_records, set_new_chain_order(), set_obey_ENDMDL(), set_read_link_records(), and set_read_pdb_header().

Referenced by PDB_DReaderOptions().

bool core::io::pdb::PDB_DReaderOptions::new_chain_order

(

)

const

References new_chain_order_.

Referenced by core::io::pdb::PDB_DReader::createFileData().

bool core::io::pdb::PDB_DReaderOptions::obey_ENDMDL

(

)

const

References obey_ENDMDL_.

Referenced by core::io::pdb::PDB_DReader::createFileData().

void core::io::pdb::PDB_DReaderOptions::parse_my_tag ( utility::tag::TagCOP  tag )

virtual

Reimplemented from core::io::pdb::FileDataOptions.

Reimplemented in core::import_pose::ImportPoseOptions.

References core::io::pdb::FileDataOptions::parse_my_tag(), set_new_chain_order(), set_obey_ENDMDL(), set_read_link_records(), and set_read_pdb_header().

Referenced by core::import_pose::ImportPoseOptions::parse_my_tag().

bool core::io::pdb::PDB_DReaderOptions::read_link_records

(

)

const

References read_link_records_.

Referenced by core::io::pdb::PDB_DReader::createFileData().

bool core::io::pdb::PDB_DReaderOptions::read_pdb_header

(

)

const

References read_pdb_header_.

Referenced by core::io::pdb::PDB_DReader::createFileData().

void core::io::pdb::PDB_DReaderOptions::set_new_chain_order

(

bool

setting

)

References new_chain_order_.

Referenced by init_from_options(), and parse_my_tag().

void core::io::pdb::PDB_DReaderOptions::set_obey_ENDMDL

(

bool

setting

)

References obey_ENDMDL_.

Referenced by init_from_options(), and parse_my_tag().

void core::io::pdb::PDB_DReaderOptions::set_read_link_records

(

bool

setting

)

References read_link_records_.

Referenced by init_from_options(), and parse_my_tag().

void core::io::pdb::PDB_DReaderOptions::set_read_pdb_header

(

bool

setting

)

References read_pdb_header_.

Referenced by init_from_options(), and parse_my_tag().

std::string core::io::pdb::PDB_DReaderOptions::type ( ) const

virtual

Reimplemented from core::io::pdb::FileDataOptions.

Reimplemented in core::import_pose::ImportPoseOptions.

Member Data Documentation

bool core::io::pdb::PDB_DReaderOptions::new_chain_order_

private

Referenced by new_chain_order(), and set_new_chain_order().

bool core::io::pdb::PDB_DReaderOptions::obey_ENDMDL_

private

Referenced by obey_ENDMDL(), and set_obey_ENDMDL().

bool core::io::pdb::PDB_DReaderOptions::read_link_records_

private

Referenced by read_link_records(), and set_read_link_records().

bool core::io::pdb::PDB_DReaderOptions::read_pdb_header_

private

Referenced by read_pdb_header(), and set_read_pdb_header().

---

The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/io/pdb/pdb_dynamic_reader_options.hh
• symlinks/rosetta/src/core/io/pdb/pdb_dynamic_reader_options.cc