core::scoring::ScoreFunctionFactory Class Reference

a collection of functions making a single score_function More...

#include <ScoreFunctionFactory.hh>

Public Types
typedef core::scoring::symmetry::SymmetricScoreFunction	SymmetricScoreFunction

Static Public Member Functions
static ScoreFunctionOP	create_score_function (std::string weights_tag)
	Returns a ScoreFunction from the database weights file <weights_tag> More...
static ScoreFunctionOP	create_score_function (std::string weights_tag, std::string const &patch_tag)
	Returns a ScoreFunction from the database weights file <weights_tag> with the patch <patch_tag> More...
static ScoreFunctionOP	create_score_function (std::string weights_tag, utility::vector1< std::string > patch_tags)
	Returns a ScoreFunction from the database weights file <weights_tag> with patches in <patch_tags> More...

Static Private Member Functions
static void	apply_user_defined_reweighting_ (core::scoring::ScoreFunctionOP scorefxn)
	Applies user defined re-weighting from the options system. Reweights are applied as a factor of the original, so -rg_reweight 0.5 would result in half of the previously defined rg weight. More...
static void	load_weights_file (std::string weights_tag, ScoreFunctionOP scorefxn)

Detailed Description

a collection of functions making a single score_function

Member Typedef Documentation

typedef core::scoring::symmetry::SymmetricScoreFunction core::scoring::ScoreFunctionFactory::SymmetricScoreFunction

Member Function Documentation

void core::scoring::ScoreFunctionFactory::apply_user_defined_reweighting_ ( core::scoring::ScoreFunctionOP  scorefxn )

staticprivate

Applies user defined re-weighting from the options system. Reweights are applied as a factor of the original, so -rg_reweight 0.5 would result in half of the previously defined rg weight.

References basic::options::option, option, core::scoring::ref, score::ref_offset, score::ref_offsets, ref_offsets, core::scoring::rg, abinitio::rg_reweight, runtime_assert, core::scoring::score_type_from_name(), score::set_weights, core::scoring::hbonds::t, core::scoring::tr, user, and utility_exit_with_message.

Referenced by create_score_function().

ScoreFunctionOP core::scoring::ScoreFunctionFactory::create_score_function ( std::string  weights_tag )

static

Returns a ScoreFunction from the database weights file <weights_tag>

example(s): scorefxn = create_score_function('standard') See also: ScoreFunction ScoreFunction.show ScoreFunction.weights ScoreType

Referenced by create_score_function(), core::scoring::getScoreFunction(), and core::scoring::getScoreFunctionLegacy().

ScoreFunctionOP core::scoring::ScoreFunctionFactory::create_score_function ( std::string  weights_tag, std::string const &  patch_tag  )

static

Returns a ScoreFunction from the database weights file <weights_tag> with the patch <patch_tag>

example(s): See also: ScoreFunction ScoreFunction.show ScoreFunction.weights ScoreType

References create_score_function(), and basic::options::option.

ScoreFunctionOP core::scoring::ScoreFunctionFactory::create_score_function ( std::string  weights_tag, utility::vector1< std::string >  patch_tags  )

static

Returns a ScoreFunction from the database weights file <weights_tag> with patches in <patch_tags>

References apply_user_defined_reweighting_(), basic::options::OptionKeys::score::docking_interface_score, load_weights_file(), basic::options::OptionKeys::score::min_score_score, basic::options::option, core::scoring::PRE_TALARIS_2013_STANDARD_WTS, core::scoring::SCORE12_PATCH, basic::options::OptionKeys::corrections::score::score12prime, basic::options::OptionKeys::symmetry::symmetry_definition, and user.

void core::scoring::ScoreFunctionFactory::load_weights_file ( std::string  weights_tag, ScoreFunctionOP  scorefxn  )

staticprivate

Referenced by create_score_function().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/scoring/ScoreFunctionFactory.hh
• symlinks/rosetta/src/core/scoring/ScoreFunctionFactory.cc