 |
Rosetta Core
2014.16.56682
|
|
Rosetta Core
2014.16.56682
|
#include <GaussianChainTripleFunc.hh>
Public Member Functions | |
| GaussianChainTripleFunc (Real const gaussian_variance_, Real const loop_fixed_cost, Real const D2, Real const D3) | |
| FuncOP | clone () const |
| Real | func (Real const x) const |
| Returns a value representing this function evaluated at a given point. More... | |
| Real | dfunc (Real const x) const |
| Returns a value representing the derivative of this function evaluated at a given point. More... | |
| void | read_data (std::istream &in) |
| initialize this Func from the given std::istream. More... | |
| void | show_definition (std::ostream &out) const |
| shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More... | |
 Public Member Functions inherited from core::scoring::func::Func | |
| virtual | ~Func () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| virtual Real | estimate_dfunc (Real const r) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More... | |
| virtual Real | estimate_dfunc (Real const r, Real const h) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More... | |
| virtual void | show (std::ostream &out) const |
| Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More... | |
| virtual Size | show_violations (std::ostream &out, Real r, Size verbose_level, Real threshold=1) const |
| show some sort of stringified representation of the violations for this constraint. More... | |
Private Member Functions | |
| void | initialize_parameters () |
| void | recompute_parameters () |
Private Attributes | |
| Real | gaussian_variance_ |
| Real | loop_fixed_cost_ |
| Real | D2_ |
| Real | D3_ |
| Real | kB_T_ |
| Real | loop_fixed_cost_total_ |
| core::scoring::func::GaussianChainTripleFunc::GaussianChainTripleFunc | ( | Real const | gaussian_variance_, |
| Real const | loop_fixed_cost, | ||
| Real const | D2, | ||
| Real const | D3 | ||
| ) |
References initialize_parameters().
Referenced by clone().
|
virtual |
Implements core::scoring::func::Func.
References D2_, D3_, gaussian_variance_, GaussianChainTripleFunc(), and loop_fixed_cost_.
Returns a value representing the derivative of this function evaluated at a given point.
Implements core::scoring::func::Func.
Returns a value representing this function evaluated at a given point.
Implements core::scoring::func::Func.
References D2_, D3_, gaussian_variance_, kB_T_, log(), loop_fixed_cost_total_, and s.
|
private |
References kB_T_, and recompute_parameters().
Referenced by GaussianChainTripleFunc(), and read_data().
|
virtual |
initialize this Func from the given std::istream.
Reimplemented from core::scoring::func::Func.
References gaussian_variance_, initialize_parameters(), and loop_fixed_cost_.
|
private |
References log(), loop_fixed_cost_, loop_fixed_cost_total_, and pi.
Referenced by initialize_parameters().
|
virtual |
shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.
Reimplemented from core::scoring::func::Func.
References gaussian_variance_, and loop_fixed_cost_.
|
private |
|
private |
|
private |
Referenced by clone(), dfunc(), func(), read_data(), and show_definition().
|
private |
Referenced by dfunc(), func(), and initialize_parameters().
|
private |
Referenced by clone(), read_data(), recompute_parameters(), and show_definition().
|
private |
Referenced by func(), and recompute_parameters().
1.8.7