util.hh File Reference

utility functions for handling of symmetric conformations More...

#include <core/conformation/symmetry/SymmetricConformation.fwd.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/symmetry/SymmData.fwd.hh>
#include <core/conformation/symmetry/SymmetryInfo.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/types.hh>
#include <map>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::conformation
	core::conformation::symmetry

Functions
bool	core::conformation::symmetry::is_symmetric (conformation::Conformation const &conf)
bool	core::conformation::symmetry::is_symmetric (conformation::symmetry::SymmetryInfo const &symminfo)
conformation::symmetry::SymmetricConformationOP	core::conformation::symmetry::setup_symmetric_conformation (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< int, char > src_conf2pdb_chain)
kinematics::FoldTree	core::conformation::symmetry::set_fold_tree_from_symm_data (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< int, char > src_conf2pdb_chain)
kinematics::FoldTree	core::conformation::symmetry::replaced_symmetric_foldtree_with_new_monomer (kinematics::FoldTree symm_f, conformation::symmetry::SymmetryInfo symmetry_info, kinematics::FoldTree monomer_f)
void	core::conformation::symmetry::recenter (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata)
void	core::conformation::symmetry::shift_jump_numbers_in_dofs (conformation::Conformation &conformation, Size shift)
kinematics::FoldTree	core::conformation::symmetry::get_asymm_unit_fold_tree (core::conformation::Conformation const &conf)
void	core::conformation::symmetry::symmetrize_fold_tree (core::conformation::Conformation const &conf, kinematics::FoldTree &f)
void	core::conformation::symmetry::set_asymm_unit_fold_tree (core::conformation::Conformation &conf, kinematics::FoldTree const &f)
int	core::conformation::symmetry::residue_center_of_mass (conformation::Conformation const &conformation, int const start, int const stop)
int	core::conformation::symmetry::return_nearest_residue (conformation::Conformation const &conformation, int const begin, int const end, Vector center)
std::string	core::conformation::symmetry::show_foldtree (core::conformation::symmetry::SymmetricConformation const &symm_conf, SymmData const &symmdata, std::map< char, std::pair< Size, Size > > const &chain2range)

Detailed Description

utility functions for handling of symmetric conformations

Author

Ingemar Andre