core::membrane::geometry::MembraneResidueFactory Class Reference

Class: MembraneResidueFactory Build an implicit definition of a membrane as a set of virtual residues representing the normal and center of the membrane and membrane embedding within the pose framework. More...

#include <MembraneResidueFactory.hh>

Public Types
typedef core::chemical::ResidueTypeSetCAP	ResidueTypeSet
typedef core::chemical::ResidueTypeCOPs	ResidueTypeList

Public Member Functions
	MembraneResidueFactory ()
	Constructor for membrane residue factory. More...
	~MembraneResidueFactory ()
	Destructor. More...
void	add_membrane_residue (core::Vector &center, core::Vector &normal, core::Real &thickness, core::pose::Pose &pose, bool fullatom)
	Add a membrane definiiton residue to the pose. More...
void	add_embedding_residue (core::Vector &center, core::Vector &normal, core::Real &depth, core::pose::Pose &pose, Size jump, bool fullatom)
	Add an embedding definition residue to the pose. More...

Detailed Description

Class: MembraneResidueFactory Build an implicit definition of a membrane as a set of virtual residues representing the normal and center of the membrane and membrane embedding within the pose framework.

Member Typedef Documentation

typedef core::chemical::ResidueTypeCOPs core::membrane::geometry::MembraneResidueFactory::ResidueTypeList

typedef core::chemical::ResidueTypeSetCAP core::membrane::geometry::MembraneResidueFactory::ResidueTypeSet

Constructor & Destructor Documentation

core::membrane::geometry::MembraneResidueFactory::MembraneResidueFactory

(

)

Constructor for membrane residue factory.

Default Constructor.

core::membrane::geometry::MembraneResidueFactory::~MembraneResidueFactory

(

)

Destructor.

Default Destructor.

Member Function Documentation

void core::membrane::geometry::MembraneResidueFactory::add_embedding_residue	(	core::Vector &	center,
		core::Vector &	normal,
		core::Real &	depth,
		core::pose::Pose &	pose,
		Size	jump,
		bool	fullatom
	)

Add an embedding definition residue to the pose.

Add a membrane definition residue to the pose.

Generate an embedding residue of tpe EMB given params and make it the root of the fold tree. Should add by specified jump which is the chain beginning for the specific chain

Add a residue of type MEM to the pose at a Jump nres+1 and make the membrane residue the root of the fold tree

References core::pose::Pose::append_residue_by_jump(), numeric::xyzVector< class >::assign(), core::chemical::CENTROID, core::conformation::ResidueFactory::create_residue(), core::chemical::FA_STANDARD, core::pose::Pose::fold_tree(), core::chemical::ChemicalManager::get_instance(), core::kinematics::FoldTree::reorder(), residue_type_set, core::conformation::Residue::set_xyz(), and TR.

void core::membrane::geometry::MembraneResidueFactory::add_membrane_residue	(	core::Vector &	center,
		core::Vector &	normal,
		core::Real &	thickness,
		core::pose::Pose &	pose,
		bool	fullatom
	)

Add a membrane definiiton residue to the pose.

Add a residue of type MEM to the pose at a Jump nres+1 and make the mmebrane residue the root of the fold tree

References core::pose::Pose::append_residue_by_jump(), numeric::xyzVector< class >::assign(), core::chemical::CENTROID, core::conformation::ResidueFactory::create_residue(), core::chemical::FA_STANDARD, core::pose::Pose::fold_tree(), core::chemical::ChemicalManager::get_instance(), membrane, nres, core::kinematics::FoldTree::reorder(), residue_type_set, core::conformation::Residue::set_xyz(), core::pose::Pose::total_residue(), and TR.

Referenced by core::membrane::MembraneProteinFactory::build_pose().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/membrane/geometry/MembraneResidueFactory.hh
• symlinks/rosetta/src/core/membrane/geometry/MembraneResidueFactory.cc