MembranePotential.cc File Reference

Membrane Potential - Base Scoring Methods for LowRes Energy Function. More...

#include <core/scoring/MembranePotential.hh>
#include <core/scoring/EnvPairPotential.hh>
#include <core/scoring/MembraneTopology.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <basic/database/open.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <basic/resource_manager/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/membrane.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/io/izstream.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/conversions.hh>
#include <basic/Tracer.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring

Macros
#define	INCLUDE_core_scoring_MembranePotential_cc

Functions
MembraneEmbed const &	core::scoring::MembraneEmbed_from_pose (pose::Pose const &pose)
	Add Const Membrane Embedding to the pose cache. More...
MembraneEmbed &	core::scoring::nonconst_MembraneEmbed_from_pose (pose::Pose &pose)
	Add a non const membrane embedding object to the pose cache. More...

Variables
static basic::Tracer	TR ("core.scoring.MembranePotential")
static numeric::random::RandomGenerator	RG (280628)

Detailed Description

Membrane Potential - Base Scoring Methods for LowRes Energy Function.

Compute Low Res membrane energy terms: Menv, MPair, MCBeta and Membrane penalties. Also contains pass-through methods for accessing and updating mp framework supported data in a membrane conformation. Last Modified: 3/11/14

Author

Rebecca Faye Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Bjorn Wallner (Original)

Macro Definition Documentation

#define INCLUDE_core_scoring_MembranePotential_cc

Variable Documentation

numeric::random::RandomGenerator RG(280628)

static

Referenced by core::scoring::MembranePotential::compute_membrane_embedding().

basic::Tracer TR("core.scoring.MembranePotential")

static