ScoreFunction.cc File Reference

ScoreFunction class definition. More...

#include <core/scoring/ScoreFunction.hh>
#include <algorithm>
#include <string>
#include <vector>
#include <boost/algorithm/string/join.hpp>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/EnergiesCacheableDataType.hh>
#include <core/scoring/MinimizationGraph.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunctionInfo.hh>
#include <core/scoring/methods/EnergyMethod.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/ContextIndependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentOneBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentOneBodyEnergy.hh>
#include <core/scoring/methods/TwoBodyEnergy.hh>
#include <core/scoring/methods/WholeStructureEnergy.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/LREnergyContainer.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParam.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/scoring/Energies.hh>
#include <core/kinematics/MinimizerMapBase.hh>
#include <core/id/TorsionID.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/Pose.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <basic/init.hh>
#include <numeric/random/DistributionSampler.hh>
#include <ObjexxFCL/format.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <core/id/DOF_ID.hh>
#include <utility/vector1.hh>
#include <core/scoring/EnergyGraph.hh>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring

Functions
void	core::scoring::show_detail (std::ostream &out, EnergyMap &energies, EnergyMap weights)
template<class T >
void	core::scoring::vector1_remove (utility::vector1< T > &v, T const &t)
	private – handles setting the derived data More...
std::string	core::scoring::find_weights_file (std::string name, std::string extension)
	Utility function to locate a weights or patch file, either with a fully qualified path, in the local directory, or in the database. Names may be passed either with or without the optional extension. More...

Variables
static basic::Tracer	tr ("core.scoring")
	Utility headers. More...

Detailed Description

ScoreFunction class definition.

ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.

Atom pair energy functions.

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Modified by Sergey Lyskov

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

Zhe Zhang

Variable Documentation

basic::Tracer tr("core.scoring")

static

Utility headers.

Referenced by core::scoring::ScoreFunction::_add_weights_from_file(), and core::scoring::ScoreFunction::perturb_weights().