| aa_map(AA const &aa) const | core::chemical::ResidueTypeSet | |
| aa_map_ | core::chemical::ResidueTypeSet | private |
| aas_defined_ | core::chemical::ResidueTypeSet | private |
| aas_defined_begin() const | core::chemical::ResidueTypeSet | |
| aas_defined_end() const | core::chemical::ResidueTypeSet | |
| AAsIter typedef | core::chemical::ResidueTypeSet | |
| add_residue_type(ResidueTypeOP new_type) | core::chemical::ResidueTypeSet | |
| add_residue_type(std::string const &filename) | core::chemical::ResidueTypeSet | |
| add_residue_type_to_maps(ResidueTypeOP rsd) | core::chemical::ResidueTypeSet | private |
| all_residues_begin() const | core::chemical::ResidueTypeSet | inline |
| all_residues_end() const | core::chemical::ResidueTypeSet | inline |
| apply_patches(utility::vector1< std::string > const &filenames) | core::chemical::ResidueTypeSet | |
| atom_type_set() const | core::chemical::ResidueTypeSet | inline |
| atom_type_set(AtomTypeSetCAP atom_types) | core::chemical::ResidueTypeSet | inline |
| atom_types_ | core::chemical::ResidueTypeSet | private |
| clear_residue_maps() | core::chemical::ResidueTypeSet | private |
| const_residue_iterator typedef | core::chemical::ResidueTypeSet | |
| create_adduct_combinations(ResidueType const &rsd, std::map< std::string, int > ref_map, std::map< std::string, int > count_map, utility::vector1< bool > add_mask, utility::vector1< Adduct >::const_iterator work_iter) | core::chemical::ResidueTypeSet | |
| database_directory() const | core::chemical::ResidueTypeSet | inline |
| database_directory_ | core::chemical::ResidueTypeSet | private |
| element_set() const | core::chemical::ResidueTypeSet | inline |
| element_set(ElementSetCAP elements) | core::chemical::ResidueTypeSet | inline |
| elements_ | core::chemical::ResidueTypeSet | private |
| empty_residue_list_ | core::chemical::ResidueTypeSet | private |
| get_residue_type_with_variant_added(ResidueType const &init_rsd, VariantType const &new_type) const | core::chemical::ResidueTypeSet | |
| get_residue_type_with_variant_removed(ResidueType const &init_rsd, VariantType const &old_type) const | core::chemical::ResidueTypeSet | |
| has_name(std::string const &name) const | core::chemical::ResidueTypeSet | |
| has_name3(std::string const &name3) const | core::chemical::ResidueTypeSet | |
| interchangeability_group_map(std::string const &name) const | core::chemical::ResidueTypeSet | |
| interchangeability_group_map_ | core::chemical::ResidueTypeSet | private |
| mm_atom_type_set() const | core::chemical::ResidueTypeSet | inline |
| mm_atom_type_set(MMAtomTypeSetCAP mm_atom_types) | core::chemical::ResidueTypeSet | inline |
| mm_atom_types_ | core::chemical::ResidueTypeSet | private |
| name() const | core::chemical::ResidueTypeSet | inline |
| name3_map(std::string const &name) const | core::chemical::ResidueTypeSet | |
| name3_map_ | core::chemical::ResidueTypeSet | private |
| name_ | core::chemical::ResidueTypeSet | private |
| name_map(std::string const &name) const | core::chemical::ResidueTypeSet | |
| name_map_ | core::chemical::ResidueTypeSet | private |
| nonconst_name_map_ | core::chemical::ResidueTypeSet | private |
| operator=(ResidueTypeSet const &) | core::chemical::ResidueTypeSet | private |
| orbital_type_set() const | core::chemical::ResidueTypeSet | inline |
| orbital_type_set(orbitals::OrbitalTypeSetCAP orbital_types) | core::chemical::ResidueTypeSet | inline |
| orbital_types_ | core::chemical::ResidueTypeSet | private |
| place_adducts() | core::chemical::ResidueTypeSet | |
| read_files(utility::vector1< std::string > const &filenames) | core::chemical::ResidueTypeSet | |
| read_list_of_residues(std::string const &list_filename) | core::chemical::ResidueTypeSet | |
| remove_residue_type(std::string const &name) | core::chemical::ResidueTypeSet | |
| remove_residue_type_from_maps(ResidueTypeOP rsd) | core::chemical::ResidueTypeSet | private |
| residue_types() const | core::chemical::ResidueTypeSet | inline |
| residue_types_ | core::chemical::ResidueTypeSet | private |
| residue_types_const_ | core::chemical::ResidueTypeSet | private |
| ResidueTypeSet() | core::chemical::ResidueTypeSet | |
| ResidueTypeSet(std::string const &name, std::string const &directory, std::vector< std::string > const &extra_res_param_files=std::vector< std::string >(), std::vector< std::string > const &extra_patch_files=std::vector< std::string >()) | core::chemical::ResidueTypeSet | |
| ResidueTypeSet(ResidueTypeSet const &) | core::chemical::ResidueTypeSet | private |
| select_residues(ResidueSelector const &selector, ResidueTypeCOPs &matches) const | core::chemical::ResidueTypeSet | |
| update_residue_maps() | core::chemical::ResidueTypeSet | private |
| ~ResidueTypeSet() | core::chemical::ResidueTypeSet | virtual |
1.8.7