| build_pose(core::pose::PoseOP pose) | core::membrane::MembraneProteinFactory | private |
| chains_ | core::membrane::MembraneProteinFactory | private |
| chains_map_ | core::membrane::MembraneProteinFactory | private |
| create_membrane_pose() | core::membrane::MembraneProteinFactory | |
| embeddings_ | core::membrane::MembraneProteinFactory | private |
| fullatom_ | core::membrane::MembraneProteinFactory | private |
| include_lips_ | core::membrane::MembraneProteinFactory | private |
| initialize_chains() | core::membrane::MembraneProteinFactory | private |
| initialize_lips_exp(core::pose::PoseOP pose) | core::membrane::MembraneProteinFactory | private |
| initialize_resources() | core::membrane::MembraneProteinFactory | private |
| initialize_topology(core::pose::PoseOP pose) | core::membrane::MembraneProteinFactory | private |
| lipid_acc_ | core::membrane::MembraneProteinFactory | private |
| MembraneProteinFactory(std::string membrane_chains) | core::membrane::MembraneProteinFactory | |
| MembraneProteinFactory(bool include_lips, std::string membrane_chains, bool fullatom) | core::membrane::MembraneProteinFactory | |
| MembraneProteinFactory(utility::vector1< PoseOP > chains, utility::vector1< SpanningTopologyOP > topologies, utility::vector1< EmbedConfigInfoOP > embeddings, utility::vector1< LipidAccInfoOP > lipid_acc) | core::membrane::MembraneProteinFactory | |
| MembraneProteinFactory(bool include_lips, bool fullatom, utility::vector1< PoseOP > chains, utility::vector1< SpanningTopologyOP > topologies, utility::vector1< EmbedConfigInfoOP > embeddings, utility::vector1< LipidAccInfoOP > lipid_acc) | core::membrane::MembraneProteinFactory | |
| MembraneProteinFactory() | core::membrane::MembraneProteinFactory | private |
| mrf_ | core::membrane::MembraneProteinFactory | private |
| prefix_file_ | core::membrane::MembraneProteinFactory | private |
| show(std::ostream &out) | core::membrane::MembraneProteinFactory | private |
| topologies_ | core::membrane::MembraneProteinFactory | private |
| ~MembraneProteinFactory() | core::membrane::MembraneProteinFactory | |