core::scoring::dssp::StrandPairingSet Class Reference

#include <StrandPairing.hh>

Public Types
typedef StrandPairings::const_iterator	const_iterator

Public Member Functions
	StrandPairingSet ()
	StrandPairingSet (ObjexxFCL::FArray2_float const &hbonds, float threshold, core::pose::Pose const &)
	StrandPairingSet (core::pose::Pose const &, core::Real threshold=-0.5)
	StrandPairingSet (core::scoring::dssp::PairingList const &)
virtual	~StrandPairingSet ()
bool	check_pleat () const
char	dssp_state (core::Size res) const
char	featurizer_state (core::Size res) const
bool	paired (core::Size res1, core::Size res2, bool antiparallel) const
bool	has_pairing (core::scoring::dssp::Pairing const &) const
bool	has_pairing (StrandPairing const &) const
void	get_beta_pairs (core::scoring::dssp::PairingList &) const
bool	merge (const StrandPairingSet &other, bool domerge=false)
const_iterator	begin () const
const_iterator	end () const
Size	size () const
StrandPairing const &	strand_pairing (Size i) const
void	push_back (StrandPairing const &sp)

Private Types
typedef utility::vector1 < StrandPairing >	StrandPairings
typedef StrandPairings::iterator	iterator

Private Member Functions
void	add_pairing (core::Size res1, core::Size res2, bool antiparallel, core::Size pleating)
	Add a new pair of bonded residues to the set. More...
void	add_pairing (core::scoring::dssp::Pairing const &pairing)
void	selfmerge ()
void	compute (ObjexxFCL::FArray2_float const &hbonds, float threshold, core::pose::Pose const &)

Private Attributes
StrandPairings	pairings_

Friends
std::ostream &	operator<< (std::ostream &out, const StrandPairingSet &sp)
std::istream &	operator>> (std::istream &is, StrandPairingSet &sp)

Member Typedef Documentation

typedef StrandPairings::const_iterator core::scoring::dssp::StrandPairingSet::const_iterator

typedef StrandPairings::iterator core::scoring::dssp::StrandPairingSet::iterator

private

typedef utility::vector1< StrandPairing > core::scoring::dssp::StrandPairingSet::StrandPairings

private

Constructor & Destructor Documentation

core::scoring::dssp::StrandPairingSet::StrandPairingSet ( )

inline

core::scoring::dssp::StrandPairingSet::StrandPairingSet	(	ObjexxFCL::FArray2_float const &	hbonds,
		float	threshold,
		core::pose::Pose const &
	)

core::scoring::dssp::StrandPairingSet::StrandPairingSet	(	core::pose::Pose const &	,
		core::Real	threshold = -0.5
	)

core::scoring::dssp::StrandPairingSet::StrandPairingSet

(

core::scoring::dssp::PairingList const &

in_pairings

)

core::scoring::dssp::StrandPairingSet::~StrandPairingSet ( )

virtual

Member Function Documentation

void core::scoring::dssp::StrandPairingSet::add_pairing ( core::Size  res1, core::Size  res2, bool  antiparallel, core::Size  pleating  )

private

Add a new pair of bonded residues to the set.

StrandPairingSet::add_pairing

Detailed:

Look for a strand pairing to extend with the given pair of residues; if none exists, create a new one.

Parameters

par Global Read:

Global Write:

Remarks

References:

Authors

bblum

Last Modified:

References add(), core::scoring::dssp::StrandPairing::range_check(), runtime_assert, and tr.

void core::scoring::dssp::StrandPairingSet::add_pairing ( core::scoring::dssp::Pairing const &  pairing )

private

References core::scoring::dssp::Pairing::is_anti(), core::scoring::dssp::Pairing::Pleating(), core::scoring::dssp::Pairing::Pos1(), and core::scoring::dssp::Pairing::Pos2().

const_iterator core::scoring::dssp::StrandPairingSet::begin ( ) const

inline

References pairings_.

bool core::scoring::dssp::StrandPairingSet::check_pleat

(

)

const

void core::scoring::dssp::StrandPairingSet::compute ( ObjexxFCL::FArray2_float const &  hbonds, float  threshold, core::pose::Pose const &    )

private

References core::scoring::dssp::get_pleating(), j, nres, and core::pose::Pose::total_residue().

char core::scoring::dssp::StrandPairingSet::dssp_state

(

core::Size

res

)

const

const_iterator core::scoring::dssp::StrandPairingSet::end ( ) const

inline

References pairings_.

char core::scoring::dssp::StrandPairingSet::featurizer_state

(

core::Size

res

)

const

void core::scoring::dssp::StrandPairingSet::get_beta_pairs

(

core::scoring::dssp::PairingList &

beta_pairs

)

const

bool core::scoring::dssp::StrandPairingSet::has_pairing

(

core::scoring::dssp::Pairing const &

p

)

const

References core::scoring::dssp::Pairing::is_anti(), core::scoring::dssp::Pairing::Pos1(), and core::scoring::dssp::Pairing::Pos2().

bool core::scoring::dssp::StrandPairingSet::has_pairing

(

StrandPairing const &

p

)

const

References core::scoring::dssp::StrandPairing::mergeable().

bool core::scoring::dssp::StrandPairingSet::merge	(	const StrandPairingSet &	other,
		bool	domerge = false
	)

References pairings_.

bool core::scoring::dssp::StrandPairingSet::paired	(	core::Size	res1,
		core::Size	res2,
		bool	antiparallel
	)		const

void core::scoring::dssp::StrandPairingSet::push_back ( StrandPairing const &  sp )

inline

References pairings_.

void core::scoring::dssp::StrandPairingSet::selfmerge ( )

private

Size core::scoring::dssp::StrandPairingSet::size ( ) const

inline

References pairings_.

StrandPairing const& core::scoring::dssp::StrandPairingSet::strand_pairing ( Size  i ) const

inline

References pairings_, and runtime_assert.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, const StrandPairingSet &  sp  )

friend

std::istream& operator>> ( std::istream &  is, StrandPairingSet &  sp  )

friend

Member Data Documentation

StrandPairings core::scoring::dssp::StrandPairingSet::pairings_

private

Referenced by begin(), end(), merge(), core::scoring::dssp::operator<<(), core::scoring::dssp::operator>>(), push_back(), size(), and strand_pairing().

---

The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/scoring/dssp/StrandPairing.hh
• symlinks/rosetta/src/core/scoring/dssp/StrandPairing.cc