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Rosetta Core
2014.16.56682
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Rosetta Core
2014.16.56682
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Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation. More...
#include <SoedingFunc.hh>
Public Member Functions | |
| SoedingFunc () | |
| FuncOP | clone () const |
| returns a clone of this SoedingFunc More... | |
| Real | compute_func (Real const x) const |
| Real | func (Real const x) const |
| Returns the value of this SoedingFunc evaluated at distance x. More... | |
| Real | dfunc (Real const x) const |
| Returns the value of the first derivative of this SoedingFunc at distance x. More... | |
| virtual void | show_definition (std::ostream &out) const |
| show the definition of this SoedingFunc to the specified output stream. More... | |
| void | read_data (std::istream &in) |
| Initializes this SoedingFunc from the given istream. More... | |
 Public Member Functions inherited from core::scoring::func::Func | |
| virtual | ~Func () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| virtual Real | estimate_dfunc (Real const r) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More... | |
| virtual Real | estimate_dfunc (Real const r, Real const h) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More... | |
| virtual void | show (std::ostream &out) const |
| Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More... | |
| virtual Size | show_violations (std::ostream &out, Real r, Size verbose_level, Real threshold=1) const |
| show some sort of stringified representation of the violations for this constraint. More... | |
Private Attributes | |
| Real | w1_ |
| Real | mean1_ |
| Real | sdev1_ |
| Real | w2_ |
| Real | mean2_ |
| Real | sdev2_ |
Friends | |
| std::ostream & | operator<< (std::ostream &out, const SoedingFunc &f) |
| Calls show( out ) on this SoedingFunc. More... | |
Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation.
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inline |
Referenced by clone().
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inlinevirtual |
References core::scoring::constraints::dgaussian(), log(), and score.
Returns the value of the first derivative of this SoedingFunc at distance x.
Implements core::scoring::func::Func.
Returns the value of this SoedingFunc evaluated at distance x.
Implements core::scoring::func::Func.
References james::debug, option, and score.
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virtual |
Initializes this SoedingFunc from the given istream.
Reimplemented from core::scoring::func::Func.
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virtual |
show the definition of this SoedingFunc to the specified output stream.
Reimplemented from core::scoring::func::Func.
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friend |
Calls show( out ) on this SoedingFunc.
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private |
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private |
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private |
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private |
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private |
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private |
1.8.7