| analytic_etable_evaluation() const | core::scoring::methods::EnergyMethodOptions | inline |
| analytic_etable_evaluation(bool setting) | core::scoring::methods::EnergyMethodOptions | inline |
| analytic_etable_evaluation_ | core::scoring::methods::EnergyMethodOptions | private |
| atom_vdw_atom_type_set_name() const | core::scoring::methods::EnergyMethodOptions | |
| atom_vdw_atom_type_set_name(std::string const &setting) | core::scoring::methods::EnergyMethodOptions | |
| atom_vdw_atom_type_set_name_ | core::scoring::methods::EnergyMethodOptions | private |
| bond_angle_central_atoms_to_score() const | core::scoring::methods::EnergyMethodOptions | |
| bond_angle_central_atoms_to_score(utility::vector1< std::string > const &atom_names) | core::scoring::methods::EnergyMethodOptions | |
| bond_angle_central_atoms_to_score_ | core::scoring::methods::EnergyMethodOptions | private |
| bond_angle_residue_type_param_set() | core::scoring::methods::EnergyMethodOptions | |
| bond_angle_residue_type_param_set() const | core::scoring::methods::EnergyMethodOptions | |
| bond_angle_residue_type_param_set(scoring::mm::MMBondAngleResidueTypeParamSetOP param_set) | core::scoring::methods::EnergyMethodOptions | |
| bond_angle_residue_type_param_set_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_ang_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_improper_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_len_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_linear_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_proton_ | core::scoring::methods::EnergyMethodOptions | private |
| cartbonded_tors_ | core::scoring::methods::EnergyMethodOptions | private |
| cst_max_seq_sep() const | core::scoring::methods::EnergyMethodOptions | |
| cst_max_seq_sep(Size const setting) | core::scoring::methods::EnergyMethodOptions | |
| cst_max_seq_sep_ | core::scoring::methods::EnergyMethodOptions | private |
| elec_die() const | core::scoring::methods::EnergyMethodOptions | |
| elec_die(core::Real setting) | core::scoring::methods::EnergyMethodOptions | |
| elec_die_ | core::scoring::methods::EnergyMethodOptions | private |
| elec_max_dis() const | core::scoring::methods::EnergyMethodOptions | |
| elec_max_dis(core::Real setting) | core::scoring::methods::EnergyMethodOptions | |
| elec_max_dis_ | core::scoring::methods::EnergyMethodOptions | private |
| elec_min_dis() const | core::scoring::methods::EnergyMethodOptions | |
| elec_min_dis(core::Real setting) | core::scoring::methods::EnergyMethodOptions | |
| elec_min_dis_ | core::scoring::methods::EnergyMethodOptions | private |
| elec_no_dis_dep_die() const | core::scoring::methods::EnergyMethodOptions | |
| elec_no_dis_dep_die(bool setting) | core::scoring::methods::EnergyMethodOptions | |
| elec_no_dis_dep_die_ | core::scoring::methods::EnergyMethodOptions | private |
| EnergyMethodOptions() | core::scoring::methods::EnergyMethodOptions | |
| EnergyMethodOptions(EnergyMethodOptions const &src) | core::scoring::methods::EnergyMethodOptions | |
| etable_options() const | core::scoring::methods::EnergyMethodOptions | |
| etable_options() | core::scoring::methods::EnergyMethodOptions | |
| etable_options(etable::EtableOptions const &opts) | core::scoring::methods::EnergyMethodOptions | |
| etable_options_ | core::scoring::methods::EnergyMethodOptions | private |
| etable_type() const | core::scoring::methods::EnergyMethodOptions | |
| etable_type(std::string const &type) | core::scoring::methods::EnergyMethodOptions | |
| etable_type_ | core::scoring::methods::EnergyMethodOptions | private |
| exclude_DNA_DNA() const | core::scoring::methods::EnergyMethodOptions | |
| exclude_DNA_DNA(bool const setting) | core::scoring::methods::EnergyMethodOptions | |
| exclude_DNA_DNA_ | core::scoring::methods::EnergyMethodOptions | private |
| exclude_monomer_fa_elec() const | core::scoring::methods::EnergyMethodOptions | |
| exclude_monomer_fa_elec(bool const setting) | core::scoring::methods::EnergyMethodOptions | |
| exclude_monomer_fa_elec_ | core::scoring::methods::EnergyMethodOptions | private |
| exclude_protein_protein_fa_elec() const | core::scoring::methods::EnergyMethodOptions | |
| exclude_protein_protein_fa_elec(bool const setting) | core::scoring::methods::EnergyMethodOptions | |
| exclude_protein_protein_fa_elec_ | core::scoring::methods::EnergyMethodOptions | private |
| get_cartesian_bonded_linear() const | core::scoring::methods::EnergyMethodOptions | inline |
| get_cartesian_bonded_parameters(Real &len, Real &ang, Real &tors, Real &proton, Real &imp) const | core::scoring::methods::EnergyMethodOptions | inline |
| has_method_weights(ScoreType const &type) const | core::scoring::methods::EnergyMethodOptions | |
| hbond_options() const | core::scoring::methods::EnergyMethodOptions | |
| hbond_options() | core::scoring::methods::EnergyMethodOptions | |
| hbond_options(hbonds::HBondOptions const &opts) | core::scoring::methods::EnergyMethodOptions | |
| hbond_options_ | core::scoring::methods::EnergyMethodOptions | private |
| initialize_from_options() | core::scoring::methods::EnergyMethodOptions | |
| insert_score_function_method_options_rows(Size batch_id, std::string const &score_function_name, utility::sql_database::sessionOP db_session) const | core::scoring::methods::EnergyMethodOptions | |
| intrares_elec_correction_scale() const | core::scoring::methods::EnergyMethodOptions | |
| intrares_elec_correction_scale(core::Real setting) | core::scoring::methods::EnergyMethodOptions | |
| intrares_elec_correction_scale_ | core::scoring::methods::EnergyMethodOptions | private |
| method_weights(ScoreType const &type) const | core::scoring::methods::EnergyMethodOptions | |
| method_weights_ | core::scoring::methods::EnergyMethodOptions | private |
| MethodWeights typedef | core::scoring::methods::EnergyMethodOptions | private |
| operator!=(EnergyMethodOptions const &a, EnergyMethodOptions const &b) | core::scoring::methods::EnergyMethodOptions | friend |
| operator=(EnergyMethodOptions const &src) | core::scoring::methods::EnergyMethodOptions | |
| operator==(EnergyMethodOptions const &a, EnergyMethodOptions const &b) | core::scoring::methods::EnergyMethodOptions | friend |
| pb_bound_tag() const | core::scoring::methods::EnergyMethodOptions | |
| pb_bound_tag() | core::scoring::methods::EnergyMethodOptions | |
| pb_bound_tag(std::string const &tag) | core::scoring::methods::EnergyMethodOptions | |
| pb_bound_tag_ | core::scoring::methods::EnergyMethodOptions | private |
| pb_unbound_tag() const | core::scoring::methods::EnergyMethodOptions | |
| pb_unbound_tag() | core::scoring::methods::EnergyMethodOptions | |
| pb_unbound_tag(std::string const &tag) | core::scoring::methods::EnergyMethodOptions | |
| pb_unbound_tag_ | core::scoring::methods::EnergyMethodOptions | private |
| secondary_structure_weights() const | core::scoring::methods::EnergyMethodOptions | |
| secondary_structure_weights() | core::scoring::methods::EnergyMethodOptions | |
| set_cartesian_bonded_linear(bool lin_in) | core::scoring::methods::EnergyMethodOptions | inline |
| set_cartesian_bonded_parameters(Real len, Real ang, Real tors, Real proton, Real imp) | core::scoring::methods::EnergyMethodOptions | inline |
| set_method_weights(ScoreType const &type, utility::vector1< Real > const &wts) | core::scoring::methods::EnergyMethodOptions | |
| set_strand_strand_weights(int ss_lowstrand, int ss_cutoff) | core::scoring::methods::EnergyMethodOptions | |
| show(std::ostream &out) const | core::scoring::methods::EnergyMethodOptions | |
| smooth_fa_elec() const | core::scoring::methods::EnergyMethodOptions | |
| smooth_fa_elec(bool setting) | core::scoring::methods::EnergyMethodOptions | |
| smooth_fa_elec_ | core::scoring::methods::EnergyMethodOptions | private |
| ss_weights_ | core::scoring::methods::EnergyMethodOptions | private |
| unfolded_energies_type() const | core::scoring::methods::EnergyMethodOptions | |
| unfolded_energies_type(std::string const &type) | core::scoring::methods::EnergyMethodOptions | |
| unfolded_energies_type_ | core::scoring::methods::EnergyMethodOptions | private |
| write_score_function_method_options_table_schema(utility::sql_database::sessionOP db_session) | core::scoring::methods::EnergyMethodOptions | static |
| ~EnergyMethodOptions() | core::scoring::methods::EnergyMethodOptions | virtual |
1.8.7