util.cc File Reference

Utility function definitions for carbohydrate-containing poses. More...

#include <core/pose/carbohydrates/util.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/id/types.hh>
#include <core/id/AtomID.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <numeric/conversions.hh>
#include <numeric/angle.functions.hh>
#include <boost/lexical_cast.hpp>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::pose
	core::pose::carbohydrates

Functions
core::uint	core::pose::carbohydrates::find_seqpos_of_parent_residue (conformation::Residue const &residue)
	Scan through a saccharide residue's connections to find the residue from which it follows or branches. More...
std::pair < conformation::ResidueCAP, conformation::ResidueCAP >	core::pose::carbohydrates::get_glycosidic_bond_residues (Pose const &pose, uint const sequence_position)
	Return pointers to the two residues of the glycosidic bond. More...
core::uint	core::pose::carbohydrates::atom_next_to_connect_atom (conformation::Residue const &residue, core::uint const connect_atom_index)
	Scan through the list of atoms connected to a given "connect_atom" and return the first heavy atom found. More...
utility::vector1< id::AtomID >	core::pose::carbohydrates::get_reference_atoms_for_phi (Pose const &pose, uint const sequence_position)
	Return the AtomIDs of the four phi torsion reference atoms. More...
utility::vector1< id::AtomID >	core::pose::carbohydrates::get_reference_atoms_for_psi (Pose const &pose, uint const sequence_position)
	Return the AtomIDs of the four psi torsion reference atoms. More...
utility::vector1< id::AtomID >	core::pose::carbohydrates::get_reference_atoms_for_1st_omega (Pose const &pose, uint const sequence_position)
	Return the AtomIDs of the four omega torsion reference atoms. More...
utility::vector1< id::AtomID >	core::pose::carbohydrates::get_reference_atoms (uint const torsion_id, Pose const &pose, uint const sequence_position)
	Return the AtomIDs of the four reference atoms for the requested torsion. More...
void	core::pose::carbohydrates::align_virtual_atoms_in_carbohydrate_residue (conformation::Conformation &conf, uint const sequence_position)
	Set coordinates of virtual atoms (used as angle reference points) within a saccharide residue of the given conformation. More...
void	core::pose::carbohydrates::align_virtual_atoms_in_carbohydrate_residue (Pose &pose, uint const sequence_position)
	Set coordinates of virtual atoms (used as angle reference points) within a saccharide residue of the given pose. More...
core::Angle	core::pose::carbohydrates::get_glycosidic_torsion (uint const torsion_id, Pose const &pose, uint const sequence_position)
	Return the requested torsion angle between a saccharide residue of the given pose and the previous residue. More...
void	core::pose::carbohydrates::set_glycosidic_torsion (uint const torsion_id, Pose &pose, uint const sequence_position, core::Angle const setting)
	Set the requested torsion angle between a saccharide residue of the given pose and the previous residue. More...

Variables
static basic::Tracer	TR ("core.pose.carbohydrates.util")

Detailed Description

Utility function definitions for carbohydrate-containing poses.

Author

Labonte

Variable Documentation

basic::Tracer TR("core.pose.carbohydrates.util")

static