core::membrane::io::SpanFileIO Class Reference

Span File Reader. More...

#include <SpanFileIO.hh>

Public Member Functions
	SpanFileIO ()
	Constructor. More...
	~SpanFileIO ()
	Destructor. More...
SpanningTopologyOP	get_topology_from_spanfile (std::string spanfile)
	Copy constructor. More...

Private Member Functions
void	read_spanfile (SpanningTopologyOP topology, std::string spanfile)
	Read in information from given file. More...
void	setup_span_info (SpanningTopologyOP topology)
	Set up span and full span info. More...
void	setup_tmregion (SpanningTopologyOP topology)
	Set values in tmregion (true/false for is_tmregion) More...
void	setup_relative_tmh (SpanningTopologyOP topology)
	Set relative tmh information. More...

Detailed Description

Span File Reader.

Reads in topology data from an octopus span file for helical transmembrane proteins

Constructor & Destructor Documentation

core::membrane::io::SpanFileIO::SpanFileIO

(

)

Constructor.

Parameters

[none]

core::membrane::io::SpanFileIO::~SpanFileIO

(

)

Destructor.

Parameters

[none]

Member Function Documentation

SpanningTopologyOP core::membrane::io::SpanFileIO::get_topology_from_spanfile

(

std::string

spanfile

)

Copy constructor.

Get Topology from SpanFile.

Get Topology from Spanfile

Parameters

spanfile

References read_spanfile(), setup_relative_tmh(), setup_span_info(), setup_tmregion(), and TR.

void core::membrane::io::SpanFileIO::read_spanfile ( SpanningTopologyOP  topology, std::string  spanfile  )

private

Read in information from given file.

Read Spanfile from Locator ID.

Parameters

Topology

Info Object and spanfile

Read in span file using izstream

Parameters

spanfile

spanfile locoator ID

References utility::io::izstream::clear(), utility::io::izstream::close(), getline(), l, and TR.

Referenced by get_topology_from_spanfile().

void core::membrane::io::SpanFileIO::setup_relative_tmh ( SpanningTopologyOP  topology )

private

Set relative tmh information.

Set relative tmh info.

Parameters

Topology

Info Object

Referenced by get_topology_from_spanfile().

void core::membrane::io::SpanFileIO::setup_span_info ( SpanningTopologyOP  topology )

private

Set up span and full span info.

Parameters

Topology

Info Object

Referenced by get_topology_from_spanfile().

void core::membrane::io::SpanFileIO::setup_tmregion ( SpanningTopologyOP  topology )

private

Set values in tmregion (true/false for is_tmregion)

Parameters

Topology

Info Object

Referenced by get_topology_from_spanfile().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/membrane/io/SpanFileIO.hh
• symlinks/rosetta/src/core/membrane/io/SpanFileIO.cc