core::pack::task::residue_selector::ResidueIndexSelector Class Reference

The ResidueIndexSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which match the given residue index. The index is read as comma-separated list of either Rosetta indices (e.g. 10) or PDB numbers (e.g. 10A, residue 10 of chain A). Detection and mapping from PDB to Rosetta residue numbers is done internally. More...

#include <ResidueIndexSelector.hh>

Public Member Functions
	ResidueIndexSelector ()
	ResidueIndexSelector (std::string const &index_str)
virtual	~ResidueIndexSelector ()
virtual void	apply (core::pose::Pose const &pose, ResidueSubset &subset) const
	Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue() More...
virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &)
	Initialize any data members of this instance from an input tag and a DataMap object. More...
virtual std::string	get_name () const
void	set_index (std::string const &index_str)
	sets the string by which residues are selected More...
Public Member Functions inherited from core::pack::task::residue_selector::ResidueSelector
	ResidueSelector ()
virtual	~ResidueSelector ()

Static Public Member Functions
static std::string	class_name ()

Private Attributes
std::string	index_str_

Detailed Description

The ResidueIndexSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which match the given residue index. The index is read as comma-separated list of either Rosetta indices (e.g. 10) or PDB numbers (e.g. 10A, residue 10 of chain A). Detection and mapping from PDB to Rosetta residue numbers is done internally.

Constructor & Destructor Documentation

core::pack::task::residue_selector::ResidueIndexSelector::ResidueIndexSelector

(

)

core::pack::task::residue_selector::ResidueIndexSelector::ResidueIndexSelector

(

std::string const &

index_str

)

References index_str_.

core::pack::task::residue_selector::ResidueIndexSelector::~ResidueIndexSelector ( )

virtual

Member Function Documentation

void core::pack::task::residue_selector::ResidueIndexSelector::apply ( core::pose::Pose const &  pose, ResidueSubset &  subset  ) const

virtual

Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue()

Implements core::pack::task::residue_selector::ResidueSelector.

References core::pose::get_resnum_list(), index_str_, and core::pose::Pose::total_residue().

std::string core::pack::task::residue_selector::ResidueIndexSelector::class_name ( )

static

Referenced by get_name(), and core::pack::task::residue_selector::ResidueIndexSelectorCreator::keyname().

std::string core::pack::task::residue_selector::ResidueIndexSelector::get_name ( ) const

virtual

Implements core::pack::task::residue_selector::ResidueSelector.

References class_name().

void core::pack::task::residue_selector::ResidueIndexSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

virtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::pack::task::residue_selector::ResidueSelector.

References set_index().

void core::pack::task::residue_selector::ResidueIndexSelector::set_index

(

std::string const &

index_str

)

sets the string by which residues are selected

References index_str_.

Referenced by parse_my_tag().

Member Data Documentation

std::string core::pack::task::residue_selector::ResidueIndexSelector::index_str_

private

Referenced by apply(), ResidueIndexSelector(), and set_index().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/core/pack/task/residue_selector/ResidueIndexSelector.hh
• symlinks/rosetta/src/core/pack/task/residue_selector/ResidueIndexSelector.cc