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Rosetta Core
2014.16.56682
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Rosetta Core
2014.16.56682
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This is the complete list of members for core::scoring::geometric_solvation::GeometricSolEnergyEvaluator, including all inherited members.
| acceptorRes_occludingRes_geometric_sol_one_way(conformation::Residue const &acc_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| acceptorRes_occludingRes_geometric_sol_one_way_bb_bb(conformation::Residue const &acc_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| acceptorRes_occludingRes_geometric_sol_one_way_sc(conformation::Residue const &acc_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| acceptorRes_occludingRes_geometric_sol_RNA_intra(conformation::Residue const &rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| atom_is_acceptor(conformation::Residue const &rsd, Size const atm) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| atom_is_donor(conformation::Residue const &rsd, Size const atm) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| atom_is_donor_h(conformation::Residue const &rsd, Size const atm) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| atom_is_heavy(conformation::Residue const &rsd, Size const atm) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| atomic_interaction_cutoff() const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| correct_geom_sol_acceptor_base_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| dist_cut2_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| donorRes_occludingRes_geometric_sol_one_way(conformation::Residue const &don_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| donorRes_occludingRes_geometric_sol_one_way_bb_bb(conformation::Residue const &don_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| donorRes_occludingRes_geometric_sol_one_way_sc(conformation::Residue const &don_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| donorRes_occludingRes_geometric_sol_RNA_intra(conformation::Residue const &rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| eval_atom_derivative_intra_RNA(id::AtomID const &atom_id, pose::Pose const &pose, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| eval_atom_energy(id::AtomID const &atom_id, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &, EnergyMap &emap) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| geometric_sol_one_way_bb_bb(conformation::Residue const &polar_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| geometric_sol_one_way_sc(conformation::Residue const &polar_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| geometric_sol_scale_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| GeometricSolEnergyEvaluator(methods::EnergyMethodOptions const &opts) | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| GeometricSolEnergyEvaluator(GeometricSolEnergyEvaluator const &src) | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| get_acceptor_base_atm_xyz(conformation::Residue const &acc_rsd, Size const &acc_atm) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| get_atom_atom_geometric_solvation_for_acceptor(Size const &acc_atm, conformation::Residue const &acc_rsd, Size const &occ_atm, conformation::Residue const &occ_rsd, pose::Pose const &pose, Real &energy, bool const update_deriv=false, hbonds::HBondDerivs &deriv=hbonds::DUMMY_DERIVS) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inline |
| get_atom_atom_geometric_solvation_for_donor(Size const &don_h_atm, conformation::Residue const &don_rsd, Size const &occ_atm, conformation::Residue const &occ_rsd, pose::Pose const &pose, Real &energy, bool const update_deriv=false, hbonds::HBondDerivs &deriv=hbonds::DUMMY_DERIVS) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| get_water_cos(Vector const &base_atm_xyz, Vector const &polar_atm_xyz, Vector const &occluding_atm_xyz) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| hb_database_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| occluded_water_hbond_penalty(bool const &is_donor, hbonds::HBEvalTuple const &hbond_eval_type, Vector const &polar_atm_xyz, Vector const &base_atm_xyz, Vector const &occluding_atm_xyz, Size const &polar_nb, Size const &occ_nb, bool const update_deriv=false, hbonds::HBondDerivs &deriv=hbonds::DUMMY_DERIVS) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| options_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| res_res_geometric_sol_one_way(conformation::Residue const &polar_rsd, conformation::Residue const &occ_rsd, pose::Pose const &pose) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inline |
| residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &, EnergyMap &emap) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | |
| set_water_base_atm(Vector const &base_v, Vector const &atom_v, Vector const &water_v, Vector &water_base_v, Real const &xH, Distance const &bond_length) const | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | inlineprivate |
| verbose_ | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator | private |
| ~GeometricSolEnergyEvaluator() | core::scoring::geometric_solvation::GeometricSolEnergyEvaluator |
1.8.7