#include <EnergyGraph.hh>

Public Types
typedef graph::Node	parent

Public Types inherited from core::graph::Node
typedef EdgeListIterator	EdgeListIter

typedef EdgeListConstIterator	EdgeListConstIter

Public Member Functions
	EnergyNode (graph::Graph *owner, Size index)

virtual	~EnergyNode ()

virtual void	copy_from (parent const *source)
	copy mmember data from source node More...

virtual void	print () const
	send summaray data about this node to the screen More...

virtual Size	count_static_memory () const
	memory accounting scheme More...

virtual Size	count_dynamic_memory () const
	memory accounting scheme More...

bool	moved () const

void	moved (bool)

Public Member Functions inherited from core::graph::Node
virtual	~Node ()
	virtual destructor More...

	Node (Graph *, platform::Size node_id)
	Main constructor, no default constructor nor copy constructor. More...

void	add_edge (Edge *edge_ptr, EdgeListIter &)
	adds edge pointer to edge list; returns an iterator to the new list element More...

void	drop_edge (EdgeListIter edge_iterator)
	removes an edge iterator from the node's edge list. Only called by Edge class. More...

void	drop_all_edges ()
	deletes all edges incident upon this node More...

void	set_num_neighbors_counting_self_static (platform::Size neighbor)

Edge const *	find_edge (platform::Size other_node_index) const
	a "slow" (linear) search for an edge. More...

Edge *	find_edge (platform::Size other_node_index)
	non-const edge finding method; changes no data, but returns a non-const pointer More...

EdgeListIter	edge_list_begin ()
	returns a non-const iterator to the beginning of its edge list More...

EdgeListConstIter	const_edge_list_begin () const
	returns a const iterator to the beginning of its edge list More...

EdgeListIter	edge_list_end ()
	returns a non-const iterator to the end of its edge list More...

EdgeListConstIter	const_edge_list_end () const
	returns a const iterator to the end of its edge list More...

EdgeListIter	lower_edge_list_begin ()
	returns a non-const iterator to the beginning of its lower-edge list More...

EdgeListConstIter	const_lower_edge_list_begin () const
	returns a const iterator to the beginning of its lower-edge list More...

EdgeListIter	lower_edge_list_end ()
	returns a non-const iterator to the end of its lower-edge list More...

EdgeListConstIter	const_lower_edge_list_end () const
	returns a const iterator to the end of its lower-edge list More...

EdgeListIter	upper_edge_list_begin ()
	returns a non-const iterator to the beginning of its upper-edge list More...

EdgeListConstIter	const_upper_edge_list_begin () const
	returns a const iterator to the beginning of its upper-edge list More...

EdgeListIter	upper_edge_list_end ()
	returns a non-const iterator to the end of its upper-edge list More...

EdgeListConstIter	const_upper_edge_list_end () const
	returns a const iterator to the end of its upper-edge list More...

platform::Size	get_node_index () const
	the index for this node More...

platform::Size	num_edges () const
	the number of edges incident on this node, which may include a loop edge More...

platform::Size	num_neighbors_counting_self () const
	the number of neighbors counting "self" as a neighbor. More...

platform::Size	num_neighbors_counting_self_static () const
	the number of neighbors counting "self" as neighbor. Defaults to num_neighbors_counting_self() but can be set to other values as well. Useful in calculation of symmetrical structures. More...

platform::Size	get_num_edges_to_smaller_indexed_nodes () const
	the number of lower neighbors More...

platform::Size	get_num_edges_to_larger_indexed_nodes () const
	the number of upper neighbors – which "self" neighborness is counted if a loop edge is present More...

bool	loop_incident () const
	NOTE TO SELF: remove loop support. More...

Private Attributes
bool	moved_

Additional Inherited Members
Protected Member Functions inherited from core::graph::Node
Graph *	get_owner () const
	derived class access to the owner More...

Detailed Description

Class EnergyNode holds the result of a domainmap update from the Conformation object held by a pose; if the internal degrees of freedom for a residue (corresponding to a node in this graph) have changed (and are marked with color "0" in the domainmap), then the EnergyNode object will hold that information for the ScoringFunction to retrieve

Member Typedef Documentation

typedef graph::Node core::scoring::EnergyNode::parent

Constructor & Destructor Documentation

core::scoring::EnergyNode::EnergyNode	(	graph::Graph *	owner,
		Size	index
	)

Referenced by count_static_memory().

core::scoring::EnergyNode::~EnergyNode ( )

virtual

Member Function Documentation

void core::scoring::EnergyNode::copy_from ( parent const * source )

virtual

copy mmember data from source node

invoked by copy ctor and operator= methods from Graph base class

Reimplemented from core::graph::Node.

References moved_.

Size core::scoring::EnergyNode::count_dynamic_memory ( ) const

virtual

memory accounting scheme

recursively descend through heirarchy accounting for heap memory usage. Each derived class in the heirarchy should recursively add the amount of dynamic memory its parent allocates by calling parent::count_dynamic_memory

Reimplemented from core::graph::Node.

References core::graph::Node::count_dynamic_memory().

Size core::scoring::EnergyNode::count_static_memory ( ) const

virtual

memory accounting scheme

called on most-derived class. The most-derived class should NOT recursively call this method on its parent class. The sizeof function will handle the whole Node (or DerivedNode).

Reimplemented from core::graph::Node.

References EnergyNode().

bool core::scoring::EnergyNode::moved ( ) const

References moved_.

void core::scoring::EnergyNode::moved ( bool setting )

References moved_.

void core::scoring::EnergyNode::print ( ) const

virtual

send summaray data about this node to the screen

virtual function to print node to standard out

Reimplemented from core::graph::Node.

References core::graph::Node::print().

Member Data Documentation

bool core::scoring::EnergyNode::moved_

private

Referenced by copy_from(), and moved().

The documentation for this class was generated from the following files:

symlinks/rosetta/src/core/scoring/EnergyGraph.hh
symlinks/rosetta/src/core/scoring/EnergyGraph.cc

Public Types

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation