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Rosetta Core
2014.16.56682
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#include <core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.hh>#include <core/pack/dunbrack/RotamericSingleResidueDunbrackLibrary.tmpl.hh>#include <core/conformation/Residue.hh>#include <basic/basic.hh>#include <core/pack/dunbrack/RotamerLibrary.hh>#include <core/pack/dunbrack/DunbrackRotamer.hh>#include <ObjexxFCL/FArray2D.hh>#include <ObjexxFCL/FArray3D.hh>#include <utility/exit.hh>#include <utility/vector1.functions.hh>#include <numeric/random/random.hh>#include <numeric/MathTensor.hh>#include <numeric/interpolation/spline/TricubicSpline.hh>#include <boost/cstdint.hpp>#include <platform/types.hh>#include <core/types.hh>#include <core/chemical/AA.hh>#include <core/chemical/Adduct.fwd.hh>#include <core/chemical/Adduct.hh>#include <core/chemical/AtomICoor.fwd.hh>#include <core/chemical/AtomICoor.hh>#include <core/chemical/AtomType.fwd.hh>#include <core/chemical/AtomType.hh>#include <core/chemical/AtomTypeSet.fwd.hh>#include <core/chemical/ElementSet.fwd.hh>#include <core/chemical/MMAtomType.fwd.hh>#include <core/chemical/MMAtomTypeSet.fwd.hh>#include <core/chemical/ResConnID.fwd.hh>#include <core/chemical/ResConnID.hh>#include <core/chemical/ResidueConnection.fwd.hh>#include <core/chemical/ResidueConnection.hh>#include <core/chemical/ResidueType.fwd.hh>#include <core/chemical/ResidueType.hh>#include <core/chemical/ResidueTypeSet.fwd.hh>#include <core/chemical/VariantType.fwd.hh>#include <core/chemical/types.hh>#include <core/chemical/orbitals/ICoorOrbitalData.hh>#include <core/chemical/orbitals/OrbitalType.fwd.hh>#include <core/chemical/orbitals/OrbitalTypeSet.fwd.hh>#include <core/chemical/sdf/MolData.fwd.hh>#include <core/chemical/sdf/MolData.hh>#include <core/conformation/Atom.fwd.hh>#include <core/conformation/Atom.hh>#include <core/conformation/Conformation.fwd.hh>#include <core/conformation/PseudoBond.fwd.hh>#include <core/conformation/Residue.fwd.hh>#include <core/conformation/ResidueFactory.hh>#include <core/conformation/orbitals/OrbitalXYZCoords.hh>#include <core/conformation/signals/XYZEvent.fwd.hh>#include <core/graph/Graph.fwd.hh>#include <core/graph/Graph.hh>#include <core/graph/unordered_object_pool.fwd.hpp>#include <core/id/AtomID.fwd.hh>#include <core/id/DOF_ID.fwd.hh>#include <core/id/NamedAtomID.fwd.hh>#include <core/id/NamedStubID.fwd.hh>#include <core/id/SequenceMapping.fwd.hh>#include <core/id/TorsionID.fwd.hh>#include <core/kinematics/AtomTree.fwd.hh>#include <core/kinematics/FoldTree.fwd.hh>#include <core/kinematics/Jump.fwd.hh>#include <core/kinematics/Stub.fwd.hh>#include <core/pack/dunbrack/ChiSet.fwd.hh>#include <core/pack/dunbrack/ChiSet.hh>#include <core/pack/dunbrack/DunbrackRotamer.fwd.hh>#include <core/pack/dunbrack/RotamerLibrary.fwd.hh>#include <core/pack/dunbrack/RotamerLibraryScratchSpace.fwd.hh>#include <core/pack/dunbrack/RotamerLibraryScratchSpace.hh>#include <core/pack/dunbrack/RotamericSingleResidueDunbrackLibrary.fwd.hh>#include <core/pack/dunbrack/RotamericSingleResidueDunbrackLibrary.hh>#include <core/pack/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.fwd.hh>#include <core/pack/dunbrack/SingleResidueDunbrackLibrary.fwd.hh>#include <core/pack/dunbrack/SingleResidueDunbrackLibrary.hh>#include <core/pack/rotamer_set/RotamerCouplings.fwd.hh>#include <core/pack/rotamer_set/RotamerSet.fwd.hh>#include <core/pack/rotamer_set/RotamerSetOperation.fwd.hh>#include <core/pack/rotamer_set/RotamerSetOperation.hh>#include <core/pack/task/IGEdgeReweightContainer.fwd.hh>#include <core/pack/task/PackerTask.fwd.hh>#include <core/pack/task/PackerTask.hh>#include <core/pack/task/RotamerSampleOptions.hh>#include <core/pose/PDBInfo.fwd.hh>#include <core/pose/PDBPoseMap.fwd.hh>#include <core/pose/Pose.fwd.hh>#include <core/pose/Pose.hh>#include <core/pose/datacache/ObserverCache.fwd.hh>#include <core/pose/metrics/PoseMetricContainer.fwd.hh>#include <core/pose/signals/ConformationEvent.fwd.hh>#include <core/pose/signals/DestructionEvent.fwd.hh>#include <core/pose/signals/EnergyEvent.fwd.hh>#include <core/pose/signals/GeneralEvent.fwd.hh>#include <core/scoring/Energies.fwd.hh>#include <core/scoring/ScoreFunction.fwd.hh>#include <core/scoring/constraints/Constraint.fwd.hh>#include <core/scoring/constraints/ConstraintSet.fwd.hh>#include <utility/Bound.fwd.hh>#include <utility/Bound.hh>#include <utility/LexicographicalIterator.fwd.hh>#include <utility/LexicographicalIterator.hh>#include <utility/assert.hh>#include <utility/down_cast.hh>#include <utility/fixedsizearray1.fwd.hh>#include <utility/fixedsizearray1.hh>#include <utility/stream_util.hh>#include <utility/string_util.hh>#include <utility/vector1.fwd.hh>#include <utility/vector1.hh>#include <utility/vector1_bool.hh>#include <utility/vectorL.fwd.hh>#include <utility/vectorL.hh>#include <utility/vectorL_Selector.hh>#include <utility/vectorL_bool.hh>#include <utility/file/FileName.fwd.hh>#include <utility/file/FileName.hh>#include <utility/file/PathName.fwd.hh>#include <utility/file/PathName.hh>#include <utility/file/gzip_util.hh>#include <utility/io/irstream.fwd.hh>#include <utility/io/irstream.hh>#include <utility/io/izstream.fwd.hh>#include <utility/io/izstream.hh>#include <utility/io/mpistream.hh>#include <utility/io/mpistream.ipp>#include <utility/io/orstream.fwd.hh>#include <utility/io/orstream.hh>#include <utility/io/ozstream.fwd.hh>#include <utility/io/ozstream.hh>#include <utility/io/zipstream.hpp>#include <utility/io/zipstream.ipp>#include <utility/keys/AutoKey.fwd.hh>#include <utility/keys/AutoKey.hh>#include <utility/keys/Key.fwd.hh>#include <utility/keys/Key.hh>#include <utility/keys/Key2Tuple.fwd.hh>#include <utility/keys/Key2Tuple.hh>#include <utility/keys/Key3Tuple.fwd.hh>#include <utility/keys/Key3Tuple.hh>#include <utility/keys/Key4Tuple.fwd.hh>#include <utility/keys/Key4Tuple.hh>#include <utility/keys/KeyLess.fwd.hh>#include <utility/keys/KeyLookup.fwd.hh>#include <utility/keys/KeyLookup.hh>#include <utility/keys/NoClient.fwd.hh>#include <utility/keys/NoClient.hh>#include <utility/keys/SmallKeyVector.fwd.hh>#include <utility/keys/SmallKeyVector.hh>#include <utility/keys/UserKey.fwd.hh>#include <utility/keys/VariantKey.fwd.hh>#include <utility/keys/VariantKey.hh>#include <utility/options/AnyOption.fwd.hh>#include <utility/options/AnyOption.hh>#include <utility/options/AnyVectorOption.fwd.hh>#include <utility/options/AnyVectorOption.hh>#include <utility/options/BooleanOption.fwd.hh>#include <utility/options/BooleanOption.hh>#include <utility/options/BooleanVectorOption.fwd.hh>#include <utility/options/BooleanVectorOption.hh>#include <utility/options/FileOption.fwd.hh>#include <utility/options/FileOption.hh>#include <utility/options/FileVectorOption.fwd.hh>#include <utility/options/FileVectorOption.hh>#include <utility/options/IntegerOption.fwd.hh>#include <utility/options/IntegerOption.hh>#include <utility/options/IntegerVectorOption.fwd.hh>#include <utility/options/IntegerVectorOption.hh>#include <utility/options/Option.fwd.hh>#include <utility/options/Option.hh>#include <utility/options/OptionCollection.fwd.hh>#include <utility/options/OptionCollection.hh>#include <utility/options/PathOption.fwd.hh>#include <utility/options/PathOption.hh>#include <utility/options/PathVectorOption.fwd.hh>#include <utility/options/PathVectorOption.hh>#include <utility/options/RealOption.fwd.hh>#include <utility/options/RealOption.hh>#include <utility/options/RealVectorOption.fwd.hh>#include <utility/options/RealVectorOption.hh>#include <utility/options/ScalarOption.fwd.hh>#include <utility/options/ScalarOption.hh>#include <utility/options/ScalarOption_T_.fwd.hh>#include <utility/options/ScalarOption_T_.hh>#include <utility/options/StringOption.fwd.hh>#include <utility/options/StringOption.hh>#include <utility/options/StringVectorOption.fwd.hh>#include <utility/options/StringVectorOption.hh>#include <utility/options/VariantOption.fwd.hh>#include <utility/options/VariantOption.hh>#include <utility/options/VectorOption.fwd.hh>#include <utility/options/VectorOption.hh>#include <utility/options/VectorOption_T_.fwd.hh>#include <utility/options/VectorOption_T_.hh>#include <utility/options/mpi_stderr.hh>#include <utility/options/keys/AnyOptionKey.fwd.hh>#include <utility/options/keys/AnyOptionKey.hh>#include <utility/options/keys/AnyVectorOptionKey.fwd.hh>#include <utility/options/keys/AnyVectorOptionKey.hh>#include <utility/options/keys/BooleanOptionKey.fwd.hh>#include <utility/options/keys/BooleanOptionKey.hh>#include <utility/options/keys/BooleanVectorOptionKey.fwd.hh>#include <utility/options/keys/BooleanVectorOptionKey.hh>#include <utility/options/keys/FileOptionKey.fwd.hh>#include <utility/options/keys/FileOptionKey.hh>#include <utility/options/keys/FileVectorOptionKey.fwd.hh>#include <utility/options/keys/FileVectorOptionKey.hh>#include <utility/options/keys/IntegerOptionKey.fwd.hh>#include <utility/options/keys/IntegerOptionKey.hh>#include <utility/options/keys/IntegerVectorOptionKey.fwd.hh>#include <utility/options/keys/IntegerVectorOptionKey.hh>#include <utility/options/keys/OptionKey.fwd.hh>#include <utility/options/keys/OptionKey.hh>#include <utility/options/keys/OptionKeys.hh>#include <utility/options/keys/PathOptionKey.fwd.hh>#include <utility/options/keys/PathOptionKey.hh>#include <utility/options/keys/PathVectorOptionKey.fwd.hh>#include <utility/options/keys/PathVectorOptionKey.hh>#include <utility/options/keys/RealOptionKey.fwd.hh>#include <utility/options/keys/RealOptionKey.hh>#include <utility/options/keys/RealVectorOptionKey.fwd.hh>#include <utility/options/keys/RealVectorOptionKey.hh>#include <utility/options/keys/ScalarOptionKey.fwd.hh>#include <utility/options/keys/ScalarOptionKey.hh>#include <utility/options/keys/StringOptionKey.fwd.hh>#include <utility/options/keys/StringOptionKey.hh>#include <utility/options/keys/StringVectorOptionKey.fwd.hh>#include <utility/options/keys/StringVectorOptionKey.hh>#include <utility/options/keys/VectorOptionKey.fwd.hh>#include <utility/options/keys/VectorOptionKey.hh>#include <utility/options/keys/all.hh>#include <utility/pointer/ReferenceCount.fwd.hh>#include <utility/pointer/ReferenceCount.hh>#include <utility/pointer/access_ptr.fwd.hh>#include <utility/pointer/access_ptr.hh>#include <utility/pointer/owning_ptr.functions.hh>#include <utility/pointer/owning_ptr.fwd.hh>#include <utility/pointer/owning_ptr.hh>#include <utility/signals/BufferedSignalHub.fwd.hh>#include <utility/signals/BufferedSignalHub.hh>#include <utility/signals/Link.fwd.hh>#include <utility/signals/Link.hh>#include <utility/signals/LinkUnit.fwd.hh>#include <utility/signals/LinkUnit.hh>#include <utility/signals/SignalHub.fwd.hh>#include <utility/signals/SignalHub.hh>#include <numeric/NumericTraits.hh>#include <numeric/constants.hh>#include <numeric/conversions.hh>#include <numeric/numeric.functions.hh>#include <numeric/sphericalVector.fwd.hh>#include <numeric/sphericalVector.hh>#include <numeric/trig.functions.hh>#include <numeric/types.hh>#include <numeric/xyz.functions.fwd.hh>#include <numeric/xyz.functions.hh>#include <numeric/xyzMatrix.fwd.hh>#include <numeric/xyzMatrix.hh>#include <numeric/xyzVector.fwd.hh>#include <numeric/xyzVector.hh>#include <numeric/internal/ColPointers.hh>#include <numeric/internal/ColVectors.hh>#include <numeric/internal/ColsPointer.hh>#include <numeric/internal/RowPointers.hh>#include <numeric/internal/RowVectors.hh>#include <numeric/internal/RowsPointer.hh>#include <numeric/random/random.fwd.hh>#include <numeric/random/uniform.fwd.hh>#include <numeric/random/uniform.hh>#include <ObjexxFCL/Dimension.fwd.hh>#include <ObjexxFCL/Dimension.hh>#include <ObjexxFCL/DimensionExpression.hh>#include <ObjexxFCL/DynamicIndexRange.fwd.hh>#include <ObjexxFCL/DynamicIndexRange.hh>#include <ObjexxFCL/FArray.all.fwd.hh>#include <ObjexxFCL/FArray.fwd.hh>#include <ObjexxFCL/FArray.hh>#include <ObjexxFCL/FArray1.all.fwd.hh>#include <ObjexxFCL/FArray1.fwd.hh>#include <ObjexxFCL/FArray1A.fwd.hh>#include <ObjexxFCL/FArray1D.fwd.hh>#include <ObjexxFCL/FArray1P.fwd.hh>#include <ObjexxFCL/FArray2.all.fwd.hh>#include <ObjexxFCL/FArray2.fwd.hh>#include <ObjexxFCL/FArray2.hh>#include <ObjexxFCL/FArray2A.fwd.hh>#include <ObjexxFCL/FArray2A.hh>#include <ObjexxFCL/FArray2D.fwd.hh>#include <ObjexxFCL/FArray2P.fwd.hh>#include <ObjexxFCL/FArray2P.hh>#include <ObjexxFCL/FArray3.all.fwd.hh>#include <ObjexxFCL/FArray3.fwd.hh>#include <ObjexxFCL/FArray3.hh>#include <ObjexxFCL/FArray3A.fwd.hh>#include <ObjexxFCL/FArray3D.fwd.hh>#include <ObjexxFCL/FArray3P.fwd.hh>#include <ObjexxFCL/FArray4.all.fwd.hh>#include <ObjexxFCL/FArray4.fwd.hh>#include <ObjexxFCL/FArray4.hh>#include <ObjexxFCL/FArray4A.fwd.hh>#include <ObjexxFCL/FArray4D.fwd.hh>#include <ObjexxFCL/FArray4D.hh>#include <ObjexxFCL/FArray4P.fwd.hh>#include <ObjexxFCL/FArray5.all.fwd.hh>#include <ObjexxFCL/FArray5.fwd.hh>#include <ObjexxFCL/FArray5A.fwd.hh>#include <ObjexxFCL/FArray5D.fwd.hh>#include <ObjexxFCL/FArray5P.fwd.hh>#include <ObjexxFCL/FArray6.all.fwd.hh>#include <ObjexxFCL/FArray6.fwd.hh>#include <ObjexxFCL/FArray6A.fwd.hh>#include <ObjexxFCL/FArray6D.fwd.hh>#include <ObjexxFCL/FArray6P.fwd.hh>#include <ObjexxFCL/FArrayInitializer.fwd.hh>#include <ObjexxFCL/FArrayInitializer.hh>#include <ObjexxFCL/FArraySection.fwd.hh>#include <ObjexxFCL/FArraySection.hh>#include <ObjexxFCL/FArrayTraits.fwd.hh>#include <ObjexxFCL/FArrayTraits.hh>#include <ObjexxFCL/Fmath.hh>#include <ObjexxFCL/IndexRange.fwd.hh>#include <ObjexxFCL/IndexRange.hh>#include <ObjexxFCL/InitializerSentinel.hh>#include <ObjexxFCL/KeyFArray1D.fwd.hh>#include <ObjexxFCL/KeyFArray2D.fwd.hh>#include <ObjexxFCL/KeyFArray3D.fwd.hh>#include <ObjexxFCL/KeyFArray4D.fwd.hh>#include <ObjexxFCL/KeyFArray5D.fwd.hh>#include <ObjexxFCL/KeyFArray6D.fwd.hh>#include <ObjexxFCL/Observer.fwd.hh>#include <ObjexxFCL/Observer.hh>#include <ObjexxFCL/ObserverMulti.hh>#include <ObjexxFCL/ObserverSingle.hh>#include <ObjexxFCL/ProxySentinel.hh>#include <ObjexxFCL/SetWrapper.fwd.hh>#include <ObjexxFCL/Star.fwd.hh>#include <ObjexxFCL/Star.hh>#include <ObjexxFCL/StaticIndexRange.fwd.hh>#include <ObjexxFCL/StaticIndexRange.hh>#include <ObjexxFCL/TypeTraits.hh>#include <ObjexxFCL/char.functions.hh>#include <ObjexxFCL/proxy_const_assert.hh>#include <ObjexxFCL/string.functions.hh>#include <algorithm>#include <cassert>#include <cmath>#include <cstddef>#include <cstdio>#include <cstdlib>#include <fstream>#include <iomanip>#include <ios>#include <iosfwd>#include <iostream>#include <istream>#include <iterator>#include <limits>#include <list>#include <map>#include <ostream>#include <set>#include <sstream>#include <string>#include <typeinfo>#include <utility>#include <vector>#include <basic/MetricValue.fwd.hh>#include <basic/datacache/BasicDataCache.fwd.hh>#include <basic/interpolate.hh>#include <basic/options/keys/OptionKeys.hh>#include <basic/options/option.hh>#include <boost/algorithm/string/erase.hpp>#include <boost/bind.hpp>#include <boost/config.hpp>#include <boost/function.hpp>#include <boost/pool/detail/mutex.hpp>#include <boost/pool/poolfwd.hpp>#include <zlib/zlib.h>#include <zlib/zutil.h>Namespaces | |
| core | |
| A class for defining atom parameters, known as atom_types. | |
| core::pack | |
| core::pack::dunbrack | |
1.8.7