Unnormalized, unbounded sum of Gaussians constraint. More...

#include <USOGFunc.hh>

Public Member Functions
	USOGFunc ()
	Used in conjunction with read_data() to initialize a new instance. More...

	USOGFunc (core::Real mean, core::Real std_dev, core::Real weight=1)
	Constructs a new instance with a single gaussian. More...

	USOGFunc (const utility::vector1< core::Real > &means, const utility::vector1< core::Real > &std_devs, const utility::vector1< core::Real > &weights)
	Constructs a new instance from the specified lists of means, standard deviations, and weights. Assumes that all lists have equal length and weights sum to 1. More...

	~USOGFunc ()
	No-op virtual destructor. More...

FuncOP	clone () const

core::Real	func (const core::Real x) const
	Returns a value representing this function evaluated at a given point. More...

core::Real	dfunc (const core::Real x) const
	Returns a value representing the derivative of this function evaluated at a given point. More...

void	read_data (std::istream &in)
	Initializes this function from the given input stream. More...

void	show_definition (std::ostream &out) const
	Writes the definition of this function to the specific output stream. More...

core::Size	numGaussians () const
	Returns the number of Gaussian components. More...

Public Member Functions inherited from core::scoring::func::Func
virtual	~Func ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual Real	estimate_dfunc (Real const r) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...

virtual Real	estimate_dfunc (Real const r, Real const h) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...

virtual void	show (std::ostream &out) const
	Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...

virtual Size	show_violations (std::ostream &out, Real r, Size verbose_level, Real threshold=1) const
	show some sort of stringified representation of the violations for this constraint. More...

Static Public Attributes
static Real	background_prob = exp(-10.)

Private Member Functions
void	resetInstance ()
	Resets all information associated with this instance. More...

Private Attributes
utility::vector1< core::Real >	means_

utility::vector1< core::Real >	std_devs_

utility::vector1< core::Real >	weights_

Detailed Description

Unnormalized, unbounded sum of Gaussians constraint.

Constructor & Destructor Documentation

core::scoring::func::USOGFunc::USOGFunc ( )

inline

Used in conjunction with read_data() to initialize a new instance.

Referenced by clone().

core::scoring::func::USOGFunc::USOGFunc	(	core::Real	mean,
		core::Real	std_dev,
		core::Real	weight = `1`
	)

Constructs a new instance with a single gaussian.

References means_, std_devs_, and weights_.

core::scoring::func::USOGFunc::USOGFunc	(	const utility::vector1< core::Real > &	means,
		const utility::vector1< core::Real > &	std_devs,
		const utility::vector1< core::Real > &	weights
	)

Constructs a new instance from the specified lists of means, standard deviations, and weights. Assumes that all lists have equal length and weights sum to 1.

References means_, std_devs_, utility_exit_with_message, and weights_.

core::scoring::func::USOGFunc::~USOGFunc ( )

inline

No-op virtual destructor.