#include <MolecularSurfaceCalculator.hh>

Public Member Functions
	Atom ()

	~Atom ()

int	operator== (Atom const &atom2)

int	operator<= (Atom &atom2)

Public Member Functions inherited from numeric::xyzVector< float >
	xyzVector ()

	xyzVector (xyzVector const &v)

	xyzVector (xyzVector< U > const &v)

	xyzVector (Value const &t)

	xyzVector (Value const &x_a, Value const &y_a, Value const &z_a)

	xyzVector (U const *p)

	~xyzVector ()

xyzVector &	operator= (xyzVector const &v)

xyzVector &	operator= (xyzVector< U > const &v)

xyzVector &	operator= (U const *p)

xyzVector &	operator= (Value const &t)

xyzVector &	operator+= (xyzVector< U > const &v)

xyzVector &	operator+= (Value const &t)

xyzVector &	operator-= (xyzVector< U > const &v)

xyzVector &	operator-= (Value const &t)

xyzVector &	scaled_assign (Value const &t, xyzVector< U > const &v)

xyzVector &	scaled_add (Value const &t, xyzVector< U > const &v)

xyzVector &	scaled_sub (Value const &t, xyzVector< U > const &v)

xyzVector &	operator*= (Value const &t)

xyzVector &	operator/= (Value const &t)

xyzVector &	assign (Value const &x_a, Value const &y_a, Value const &z_a)

xyzVector &	clear ()

xyzVector &	zero ()

xyzVector &	negate ()

xyzVector	operator- () const

xyzVector	negated () const

void	negated (xyzVector &a) const

xyzVector &	min (xyzVector const &v)

xyzVector &	max (xyzVector const &v)

xyzVector &	normalize ()

xyzVector &	normalize (Value const &length_a)

T	minimum_value () const

T	maximum_value () const

void	normalized (xyzVector &a) const

void	normalized (Value const &length_a, xyzVector &a) const

xyzVector	normalized () const

xyzVector	normalized (Value const &length_a) const

xyzVector &	normalize_or_zero ()

xyzVector &	normalize_or_zero (Value const &length_a)

void	normalized_or_zero (xyzVector &a) const

void	normalized_or_zero (Value const &length_a, xyzVector &a) const

xyzVector	normalized_or_zero () const

xyzVector	normalized_or_zero (Value const &length_a) const

xyzVector &	normalize_any ()

xyzVector &	normalize_any (Value const &length_a)

void	normalized_any (xyzVector &a) const

void	normalized_any (Value const &length_a, xyzVector &a) const

xyzVector	normalized_any () const

xyzVector	normalized_any (Value const &length_a) const

xyzVector &	project_normal (xyzVector const &v)

xyzVector	projected_normal (xyzVector const &v) const

void	projected_normal (xyzVector const &v, xyzVector &a) const

xyzVector &	project_parallel (xyzVector const &v)

xyzVector	projected_parallel (xyzVector const &v) const

void	projected_parallel (xyzVector const &v, xyzVector &a)

Value	distance (xyzVector const &v) const

Value	distance_squared (xyzVector const &v) const

Value	dot (xyzVector const &v) const

Value	dot_product (xyzVector const &v) const

Value	inner_product (xyzVector const &v) const

xyzVector	cross (xyzVector const &v) const

xyzVector	cross_product (xyzVector const &v) const

bool	is_zero () const

bool	is_normalized () const

bool	is_normalized (Value const &tol) const

bool	is_unit () const

bool	is_unit (Value const &tol) const

Value const &	x () const

Value &	x ()

void	x (Value const &x_a)

Value const &	y () const

Value &	y ()

void	y (Value const &y_a)

Value const &	z () const

Value &	z ()

void	z (Value const &z_a)

Value	length () const

Value	length_squared () const

Value	norm () const

Value	norm_squared () const

Value	magnitude () const

Value	magnitude_squared () const

Value const &	at (int const i) const

Value &	at (int const i)

Value const &	operator[] (int const i) const

Value &	operator[] (int const i)

Value const &	operator() (int const i) const

Value &	operator() (int const i)

bool	equal_length (xyzVector const &v)

bool	not_equal_length (xyzVector const &v)

bool	longer (xyzVector const &v)

bool	longer_or_equal (xyzVector const &v)

bool	shorter (xyzVector const &v)

bool	shorter_or_equal (xyzVector const &v)

Public Attributes
core::Size	natom

core::Size	nresidue

char	atom [4]

char	residue [4]

core::Size	molecule

float	radius

float	density

int	atten

int	access

std::vector< Atom * >	neighbors

std::vector< Atom * >	buried

Friends
class	ShapeComplementarityCalculator

Additional Inherited Members
Public Types inherited from numeric::xyzVector< float >
typedef T	Value

typedef T &	Reference

typedef T const &	ConstReference

typedef T *	Pointer

typedef T const *	ConstPointer

typedef T	value_type

typedef T &	reference

typedef T const &	const_reference

typedef T *	pointer

typedef T const *	const_pointer

typedef void	iterator_category

typedef void	difference_type