#include <core/io/pdb/file_data_fixup.hh>
#include <core/io/pdb/file_data_options.fwd.hh>
#include <core/io/pdb/file_data.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.hh>
#include <core/types.hh>
#include <iostream>
#include <map>
#include <string>

Namespaces
	core
	A class for defining atom parameters, known as atom_types.

	core::io

	core::io::pdb

Functions
std::string	core::io::pdb::convert_res_name (std::string const &name)

std::string	core::io::pdb::convert_atom_name (std::string const &res_name, std::string atom_name)
	for nucleic acids, slightly better mechanism is below (convert_nucleic_acid_residue_info_to_standard) More...

void	core::io::pdb::convert_nucleic_acid_residue_info_to_standard (utility::vector1< ResidueInformation > &all_rinfo, bool const force_RNA)

bool	core::io::pdb::is_potential_old_DNA (std::string const &res_name)

bool	core::io::pdb::is_old_RNA (std::string const &res_name)

bool	core::io::pdb::is_NA (std::string const &res_name)

bool	core::io::pdb::missing_O2prime (utility::vector1< AtomInformation > const &atoms)

void	core::io::pdb::convert_nucleic_acid_atom_names_to_standard (ResidueInformation &rinfo, bool const )

void	core::io::pdb::convert_nucleic_acid_atom_name_to_standard (AtomInformation &atom_info)

void	core::io::pdb::check_and_correct_sister_atoms (core::conformation::ResidueOP &rsd)

void	core::io::pdb::check_and_correct_sister_atom_based_on_chirality (core::conformation::ResidueOP &rsd, std::string const sister1_name, std::string const sister2_name, std::string const parent_name, std::string const cousin_name)

void	core::io::pdb::check_and_correct_sister_atom_based_on_outgroup (core::conformation::ResidueOP &rsd, std::string const sister1_name, std::string const sister2_name, std::string const outgroup_name)

void	core::io::pdb::flip_atom_xyz (core::conformation::ResidueOP &rsd, std::string const &sister1_name, std::string const &sister2_name)

int	core::io::pdb::sgn (Real const &x)

int	core::io::pdb::get_chirality_sign (Vector const &xyz_sister1, Vector const &xyz_sister2, Vector const &xyz_parent, Vector const &xyz_cousin)

int	core::io::pdb::get_closest_sister (Vector const &xyz_sister1, Vector const &xyz_sister2, Vector const &xyz_outgroup)

Namespaces

Functions