Rosetta Core
2014.16.56682
Main Page
Related Pages
Namespaces
Classes
Files
Class List
Class Hierarchy
Class Members
All
Functions
Variables
Typedefs
Enumerations
Enumerator
Related Functions
_
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w
x
y
z
~
- ~ -
~ABEGO() :
core::util::ABEGO
~ABEGOEval() :
core::fragment::picking_old::vall::eval::ABEGOEval
~ABEGOManager() :
core::util::ABEGOManager
~AbstractRotamerTrie() :
core::conformation::AbstractRotamerTrie
~AddBehaviorRLT() :
core::pack::task::operation::AddBehaviorRLT
~AdditionalBackgroundNodesInteractionGraph() :
core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
~Aligner() :
core::sequence::Aligner
~AmbiguousConstraintCreator() :
core::scoring::constraints::AmbiguousConstraintCreator
~AmbiguousNMRConstraintCreator() :
core::scoring::constraints::AmbiguousNMRConstraintCreator
~AmbiguousNMRDistanceConstraintCreator() :
core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator
~AnalyticEtableEvaluator() :
core::scoring::etable::AnalyticEtableEvaluator
~AndResidueSelector() :
core::pack::task::residue_selector::AndResidueSelector
~AngleConstraintCreator() :
core::scoring::constraints::AngleConstraintCreator
~APBSConfig() :
core::scoring::APBSConfig
~APBSResult() :
core::scoring::APBSResult
~APBSWrapper() :
core::scoring::APBSWrapper
~AppendResidueRotamerSet() :
core::pack::task::operation::AppendResidueRotamerSet
~AppendRotamer() :
core::pack::task::operation::AppendRotamer
~AppendRotamerSet() :
core::pack::task::operation::AppendRotamerSet
~Array0() :
core::graph::Array0< T >
~Array2D() :
core::scoring::packstat::Array2D
~ArrayPool() :
core::graph::ArrayPool< T >
~ArrayPoolElement() :
core::graph::ArrayPoolElement< T >
~Atom() :
core::chemical::Atom
,
core::conformation::Atom
,
core::kinematics::tree::Atom
,
core::scoring::sc::Atom
~Atom_() :
core::kinematics::tree::Atom_
~AtomID_Map() :
core::id::AtomID_Map< T >
~AtomPairConstraintCreator() :
core::scoring::constraints::AtomPairConstraintCreator
~AtomPairFuncList() :
core::scoring::custom_pair_distance::AtomPairFuncList
~AtomRadiusMap() :
core::scoring::packstat::AtomRadiusMap
~AtomTree() :
core::kinematics::AtomTree
~AtomTreeCollection() :
core::pack::scmin::AtomTreeCollection
~AtomTreeDiff() :
core::import_pose::atom_tree_diffs::AtomTreeDiff
~AtomTreeMinimizer() :
core::optimization::AtomTreeMinimizer
~AtomTreeMultifunc() :
core::optimization::AtomTreeMultifunc
~AtomTreeSCMinMinimizerMap() :
core::pack::scmin::AtomTreeSCMinMinimizerMap
~AtomTypeDatabaseIO() :
core::chemical::AtomTypeDatabaseIO
~AtomTypeSet() :
core::chemical::AtomTypeSet
~AutomorphismIterator() :
core::chemical::AutomorphismIterator
~BackboneStubConstraint() :
core::scoring::constraints::BackboneStubConstraint
~BackboneStubLinearConstraint() :
core::scoring::constraints::BackboneStubLinearConstraint
~BackgroundNode() :
core::pack::interaction_graph::BackgroundNode< V, E, G >
~BackgroundToFirstClassEdge() :
core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
~BB_BB_EnergyInvoker() :
core::scoring::etable::BB_BB_EnergyInvoker< Evaluator >
~BBDepSemiRotamericData() :
core::pack::dunbrack::BBDepSemiRotamericData< T >
~BBIndSemiRotamericData() :
core::pack::dunbrack::BBIndSemiRotamericData< T >
~BigBinConstraintCreator() :
core::scoring::constraints::BigBinConstraintCreator
~BinarySilentStruct() :
core::io::silent::BinarySilentStruct
~BinarySilentStructCreator() :
core::io::silent::BinarySilentStructCreator
~Book() :
core::fragment::picking_old::concepts::Book< Pages >
~BUFFER() :
core::io::serialization::BUFFER
~CaCbCb_Angle_Func() :
core::scoring::disulfides::CaCbCb_Angle_Func
~CaCbCbCa_Dihedral_Func() :
core::scoring::disulfides::CaCbCbCa_Dihedral_Func
~CacheableAtomID_MapVector() :
core::id::CacheableAtomID_MapVector
~CacheableObserver() :
core::pose::datacache::CacheableObserver
~CacheablePoseRawPtr() :
core::pose::datacache::CacheablePoseRawPtr
~CacheableSequenceProfile() :
core::sequence::CacheableSequenceProfile
~CacheWrapper() :
core::fragment::CacheWrapper< T, XCacheUnit >
~CarbohydrateInfo() :
core::chemical::carbohydrates::CarbohydrateInfo
~CartesianBondedEnergy() :
core::scoring::methods::CartesianBondedEnergy
~CartesianMinimizer() :
core::optimization::CartesianMinimizer
~CartesianMinimizerMap() :
core::optimization::CartesianMinimizerMap
~CartesianMultifunc() :
core::optimization::CartesianMultifunc
~CartGrid() :
core::grid::CartGrid< T >
~CartSCMinMinimizerMap() :
core::pack::scmin::CartSCMinMinimizerMap
~CartSCMinMultifunc() :
core::pack::scmin::CartSCMinMultifunc
~CB_Angle_Func() :
core::scoring::disulfides::CB_Angle_Func
~Cb_Distance_Func() :
core::scoring::disulfides::Cb_Distance_Func
~CBSG_Dihedral_Func() :
core::scoring::disulfides::CBSG_Dihedral_Func
~Cell() :
core::sequence::Cell
~Cen_Distance_Func() :
core::scoring::disulfides::Cen_Distance_Func
~CentroidDisulfideEnergy() :
core::scoring::disulfides::CentroidDisulfideEnergy
~CentroidDisulfideEnergyContainer() :
core::scoring::disulfides::CentroidDisulfideEnergyContainer
~CentroidDisulfideNeighborConstIterator() :
core::scoring::disulfides::CentroidDisulfideNeighborConstIterator
~CentroidDisulfideNeighborIterator() :
core::scoring::disulfides::CentroidDisulfideNeighborIterator
~CentroidDisulfidePotential() :
core::scoring::disulfides::CentroidDisulfidePotential
~CentroidRotamerSampleData() :
core::pack::dunbrack::cenrot::CentroidRotamerSampleData
~ChainSelector() :
core::pack::task::residue_selector::ChainSelector
~ChemicalShiftAnisotropy() :
core::scoring::ChemicalShiftAnisotropy
~ChemicalShiftData() :
core::scoring::rna::chemical_shift::ChemicalShiftData
~ChemicalShiftScoringScheme() :
core::sequence::ChemicalShiftScoringScheme
~ChemicalShiftSequence() :
core::sequence::ChemicalShiftSequence
~ChemicalShiftSequenceCreator() :
core::sequence::ChemicalShiftSequenceCreator
~CoarseSingleResidueLibrary() :
core::pack::dunbrack::CoarseSingleResidueLibrary
~CompassScoringScheme() :
core::sequence::CompassScoringScheme
~CompositeScoringScheme() :
core::sequence::CompositeScoringScheme
~CompositeSequence() :
core::sequence::CompositeSequence
~CompositeSequenceCreator() :
core::sequence::CompositeSequenceCreator
~Conformation() :
core::conformation::Conformation
~ConformationEvent() :
core::pose::signals::ConformationEvent
~ConformationKinWriter() :
core::conformation::ConformationKinWriter
~ConformationXYZ() :
core::scoring::func::ConformationXYZ
~ConnectionEvent() :
core::conformation::signals::ConnectionEvent
~const_iterator() :
core::io::raw_data::RawFileData::const_iterator
,
core::io::silent::SilentFileData::const_iterator
~ConstantConstraint() :
core::scoring::constraints::ConstantConstraint
~ConstantLengthFragSet() :
core::fragment::ConstantLengthFragSet
~ConstFrameIterator() :
core::fragment::ConstFrameIterator
~Constraint() :
core::scoring::constraints::Constraint
~ConstraintCreator() :
core::scoring::constraints::ConstraintCreator
~ConstraintEdge() :
core::scoring::constraints::ConstraintEdge
~ConstraintGraph() :
core::scoring::constraints::ConstraintGraph
~ConstraintNode() :
core::scoring::constraints::ConstraintNode
~Constraints() :
core::scoring::constraints::Constraints
~ConstraintsEnergy() :
core::scoring::constraints::ConstraintsEnergy
~ConstraintSet() :
core::scoring::constraints::ConstraintSet
~ContextDependentLRTwoBodyEnergy() :
core::scoring::methods::ContextDependentLRTwoBodyEnergy
~ContextDependentTwoBodyEnergy() :
core::scoring::methods::ContextDependentTwoBodyEnergy
~ContextGraph() :
core::scoring::ContextGraph
~ContextIndependentLRTwoBodyEnergy() :
core::scoring::methods::ContextIndependentLRTwoBodyEnergy
~ContextIndependentTwoBodyEnergy() :
core::scoring::methods::ContextIndependentTwoBodyEnergy
~ContinuousRotamerSet() :
core::pack::rotamer_set::ContinuousRotamerSet
~ContinuousRotamerSets() :
core::pack::rotamer_set::ContinuousRotamerSets
~ConvergenceTest() :
core::optimization::ConvergenceTest
~CoordinateConstraint() :
core::scoring::constraints::CoordinateConstraint
~CoordinateConstraintCreator() :
core::scoring::constraints::CoordinateConstraintCreator
~CopyDofs() :
core::pose::copydofs::CopyDofs
~Coulomb() :
core::scoring::etable::coulomb::Coulomb
~CountPair1B() :
core::scoring::etable::count_pair::CountPair1B< CrossoverBehavior >
~CountPairAll() :
core::scoring::etable::count_pair::CountPairAll
~CountPairCrossover3() :
core::scoring::etable::count_pair::CountPairCrossover3
~CountPairCrossover4() :
core::scoring::etable::count_pair::CountPairCrossover4
~CountPairFunction() :
core::scoring::etable::count_pair::CountPairFunction
~CountPairGeneric() :
core::scoring::etable::count_pair::CountPairGeneric
~CountPairIntraRes() :
core::scoring::etable::count_pair::CountPairIntraRes< CrossoverBehavior >
~CountPairIntraResC3() :
core::scoring::etable::count_pair::CountPairIntraResC3
~CountPairIntraResC4() :
core::scoring::etable::count_pair::CountPairIntraResC4
~CountPairNone() :
core::scoring::etable::count_pair::CountPairNone
~CountViolFunc() :
core::scoring::func::CountViolFunc
~CSD_TorsionEnergy() :
core::scoring::methods::CSD_TorsionEnergy
~CstEnergyContainer() :
core::scoring::constraints::CstEnergyContainer
~CstMinimizationData() :
core::scoring::constraints::CstMinimizationData
~CstResNeighbConstIterator() :
core::scoring::constraints::CstResNeighbConstIterator
~CstResNeighbIterator() :
core::scoring::constraints::CstResNeighbIterator
~CtabBase() :
core::chemical::sdf::CtabBase
~DebuggingAnnealer() :
core::pack::annealer::DebuggingAnnealer
~DecoyStruct() :
core::io::raw_data::DecoyStruct
~DenseEnergyContainer() :
core::scoring::DenseEnergyContainer
~DenseNeighborConstIterator() :
core::scoring::DenseNeighborConstIterator
~DenseNeighborIterator() :
core::scoring::DenseNeighborIterator
~DensePDEdge() :
core::pack::interaction_graph::DensePDEdge
~DensePDNode() :
core::pack::interaction_graph::DensePDNode
~DerivedSequenceMapping() :
core::sequence::DerivedSequenceMapping
~DesignContrast() :
core::io::sequence_comparation::DesignContrast
~DestructionEvent() :
core::pose::signals::DestructionEvent
~DFIRE_Potential() :
core::scoring::methods::dfire::DFIRE_Potential
~DFPMinConvergedAbsolute() :
core::optimization::DFPMinConvergedAbsolute
~DFPMinConvergedFractional() :
core::optimization::DFPMinConvergedFractional
~DihedralConstraintCreator() :
core::scoring::constraints::DihedralConstraintCreator
~DihedralPairConstraintCreator() :
core::scoring::constraints::DihedralPairConstraintCreator
~DipolarCoupling() :
core::scoring::DipolarCoupling
~DisallowIfNonnative() :
core::pack::task::operation::DisallowIfNonnative
~DisallowIfNonnativeRLT() :
core::pack::task::operation::DisallowIfNonnativeRLT
~DistanceFunc() :
core::scoring::custom_pair_distance::DistanceFunc
~DisulfideMatchingDatabase() :
core::scoring::disulfides::DisulfideMatchingDatabase
~DisulfideMatchingEnergy() :
core::scoring::disulfides::DisulfideMatchingEnergy
~DisulfideMatchingEnergyContainer() :
core::scoring::disulfides::DisulfideMatchingEnergyContainer
~DisulfideMatchingNeighborConstIterator() :
core::scoring::disulfides::DisulfideMatchingNeighborConstIterator
~DisulfideMatchingNeighborIterator() :
core::scoring::disulfides::DisulfideMatchingNeighborIterator
~DisulfideMatchingPotential() :
core::scoring::disulfides::DisulfideMatchingPotential
~DisulfMinData() :
core::scoring::disulfides::DisulfMinData
~DisulfResNeighbConstIterator() :
core::scoring::disulfides::DisulfResNeighbConstIterator
~DisulfResNeighbIterator() :
core::scoring::disulfides::DisulfResNeighbIterator
~DNA_BasePotential() :
core::scoring::dna::DNA_BasePotential
~DNABFormPotential() :
core::scoring::dna::DNABFormPotential
~DNAChiEnergy() :
core::scoring::dna::DNAChiEnergy
~DNATorsionPotential() :
core::scoring::dna::DNATorsionPotential
~DockingNoRepack1() :
core::pack::task::operation::DockingNoRepack1
~DockingNoRepack2() :
core::pack::task::operation::DockingNoRepack2
~DOF_Constraint() :
core::scoring::constraints::DOF_Constraint
~DOF_ID_Map() :
core::id::DOF_ID_Map< T >
~DofPassport() :
core::environment::DofPassport
~DotSphere() :
core::pack::interaction_graph::DotSphere
~DoubleDensePDEdge() :
core::pack::interaction_graph::DoubleDensePDEdge
~DoubleDensePDNode() :
core::pack::interaction_graph::DoubleDensePDNode
~DoubleLazyEdge() :
core::pack::interaction_graph::DoubleLazyEdge
~DoubleLazyInteractionGraph() :
core::pack::interaction_graph::DoubleLazyInteractionGraph
~DoubleLazyNode() :
core::pack::interaction_graph::DoubleLazyNode
~DP_Matrix() :
core::sequence::DP_Matrix
~DPScoringScheme() :
core::sequence::DPScoringScheme
~Dssp() :
core::scoring::dssp::Dssp
~DunbrackConstraint() :
core::pack::dunbrack::DunbrackConstraint
~DunbrackConstraintCreator() :
core::pack::dunbrack::DunbrackConstraintCreator
~DunbrackEnergy() :
core::pack::dunbrack::DunbrackEnergy
~DunbrackRotamerSampleData() :
core::pack::dunbrack::DunbrackRotamerSampleData
~Edge() :
core::graph::Edge
~EdgeBase() :
core::pack::interaction_graph::EdgeBase
~EdgeList() :
core::graph::EdgeList
~EdgeListConstIterator() :
core::graph::EdgeListConstIterator
~EdgeListElement() :
core::graph::EdgeListElement
~EdgeListIterator() :
core::graph::EdgeListIterator
~ElecAtom() :
core::scoring::elec::ElecAtom
~ElecDensAtomwiseEnergy() :
core::scoring::electron_density_atomwise::ElecDensAtomwiseEnergy
~ElectronDensity() :
core::scoring::electron_density::ElectronDensity
~ElectronDensityLoader() :
core::scoring::electron_density::ElectronDensityLoader
~ElectronDensityLoaderCreator() :
core::scoring::electron_density::ElectronDensityLoaderCreator
~ElectronDensityOptions() :
core::scoring::electron_density::ElectronDensityOptions
~ElectronDensityOptionsCreator() :
core::scoring::electron_density::ElectronDensityOptionsCreator
~ElementSet() :
core::chemical::ElementSet
~EmbedDefFallbackConfiguration() :
core::membrane::io::EmbedDefFallbackConfiguration
~EmbedDefIO() :
core::membrane::io::EmbedDefIO
~EmbedDefLoader() :
core::membrane::io::EmbedDefLoader
~EmbedDefOptions() :
core::membrane::io::EmbedDefOptions
~EmbeddingFactory() :
core::membrane::geometry::EmbeddingFactory
~EmbedSearchParamsIO() :
core::membrane::io::EmbedSearchParamsIO
~EmbedSearchParamsLoader() :
core::membrane::io::EmbedSearchParamsLoader
~EmbedSearchParamsOptions() :
core::membrane::io::EmbedSearchParamsOptions
~Energies() :
core::scoring::Energies
~EnergyEdge() :
core::scoring::EnergyEdge
~EnergyEval() :
core::fragment::picking_old::vall::eval::EnergyEval
~EnergyEvent() :
core::pose::signals::EnergyEvent
~EnergyGraph() :
core::scoring::EnergyGraph
~EnergyMethod() :
core::scoring::methods::EnergyMethod
~EnergyMethodOptions() :
core::scoring::methods::EnergyMethodOptions
~EnergyNode() :
core::scoring::EnergyNode
~EnvCore() :
core::environment::EnvCore
~Etable() :
core::scoring::etable::Etable
~EtableAtom() :
core::scoring::etable::etrie::EtableAtom
~EtableEvaluator() :
core::scoring::etable::EtableEvaluator
~EtableOptions() :
core::scoring::etable::EtableOptions
~ExactOccludedHbondSolEnergy() :
core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
~ExcludedResPredicate() :
core::scoring::ExcludedResPredicate
~ExtendAlignerSW() :
core::sequence::ExtendAlignerSW
~ExtendedPoseInputStream() :
core::import_pose::pose_stream::ExtendedPoseInputStream
~ExtraChiCutoff() :
core::pack::task::operation::ExtraChiCutoff
~ExtraRotamers() :
core::pack::task::operation::ExtraRotamers
~ExtraRotamersGeneric() :
core::pack::task::operation::ExtraRotamersGeneric
~FabConstraintCreator() :
core::scoring::constraints::FabConstraintCreator
~FadeInterval() :
core::scoring::hbonds::FadeInterval
~FASTERAnnealer() :
core::pack::annealer::FASTERAnnealer
~FASTEREdge() :
core::pack::interaction_graph::FASTEREdge
~FASTERNode() :
core::pack::interaction_graph::FASTERNode
~FileData() :
core::io::pdb::FileData
~FileDataOptions() :
core::io::pdb::FileDataOptions
~FirstClassEdge() :
core::pack::interaction_graph::FirstClassEdge< V, E, G >
~FirstClassNode() :
core::pack::interaction_graph::FirstClassNode< V, E, G >
~FixbbCoupledRotamerSimAnnealer() :
core::pack::annealer::FixbbCoupledRotamerSimAnnealer
~FixbbLinkingRotamerSimAnnealer() :
core::pack::annealer::FixbbLinkingRotamerSimAnnealer
~FixbbRotamerSets() :
core::pack::rotamer_set::FixbbRotamerSets
~FixbbSimAnnealer() :
core::pack::annealer::FixbbSimAnnealer
~FixedBBEdge() :
core::pack::interaction_graph::FixedBBEdge
~FixedBBInteractionGraph() :
core::pack::interaction_graph::FixedBBInteractionGraph
~FixedBBNode() :
core::pack::interaction_graph::FixedBBNode
~FoldTree() :
core::kinematics::FoldTree
~FormFactor() :
core::scoring::saxs::FormFactor
~FourPointsFunc() :
core::scoring::func::FourPointsFunc
~FragData() :
core::fragment::FragData
~FragID() :
core::fragment::FragID
~FragID_Iterator() :
core::fragment::FragID_Iterator
~FragmentRmsd() :
core::fragment::FragmentRmsd
~FragSet() :
core::fragment::FragSet
~FragSetCollection() :
core::fragment::FragSetCollection
~Frame() :
core::fragment::Frame
~FrameIterator() :
core::fragment::FrameIterator
~FreeMoietyEnergy() :
core::scoring::methods::FreeMoietyEnergy
~FullatomDisulfideEnergy() :
core::scoring::disulfides::FullatomDisulfideEnergy
~FullatomDisulfideEnergyContainer() :
core::scoring::disulfides::FullatomDisulfideEnergyContainer
~FullatomDisulfidePotential() :
core::scoring::disulfides::FullatomDisulfidePotential
~FullModelInfo() :
core::pose::full_model_info::FullModelInfo
~FullModelParameters() :
core::pose::full_model_info::FullModelParameters
~Func() :
core::scoring::func::Func
~GasteigerAtomTypeData() :
core::chemical::gasteiger::GasteigerAtomTypeData
~GasteigerAtomTypeSet() :
core::chemical::gasteiger::GasteigerAtomTypeSet
~GaussianOverlapEnergy() :
core::scoring::methods::GaussianOverlapEnergy
~GenBornResidueInfo() :
core::scoring::GenBornResidueInfo
~GeneralEvent() :
core::conformation::signals::GeneralEvent
,
core::pose::signals::GeneralEvent
~GeometricSolEnergyEvaluator() :
core::scoring::geometric_solvation::GeometricSolEnergyEvaluator
~GoapEnergy() :
core::scoring::methods::GoapEnergy
~GoapRsdType() :
core::scoring::methods::GoapRsdType
~Graph() :
core::graph::Graph
~Hairpin() :
core::scoring::Hairpin
~Hairpins() :
core::scoring::Hairpins
~HBAtom() :
core::scoring::hbonds::hbtrie::HBAtom
~HBCountPairFunction() :
core::scoring::hbonds::hbtrie::HBCountPairFunction
~HBEvalTuple() :
core::scoring::hbonds::HBEvalTuple
~HBond() :
core::scoring::hbonds::HBond
~HBondDatabase() :
core::scoring::hbonds::HBondDatabase
~HBondEnergy() :
core::scoring::hbonds::HBondEnergy
~HBondOptions() :
core::scoring::hbonds::HBondOptions
~HBondResidueMinData() :
core::scoring::hbonds::HBondResidueMinData
~HBondResPairMinData() :
core::scoring::hbonds::HBondResPairMinData
~HBondSet() :
core::scoring::hbonds::HBondSet
~HeaderInformation() :
core::io::pdb::HeaderInformation
~Helices() :
core::scoring::Helices
~HolesResult() :
core::scoring::packing::HolesResult
~HPatchBackgroundEdge() :
core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
~HPatchBackgroundNode() :
core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
~HPatchEdge() :
core::pack::interaction_graph::HPatchEdge< V, E, G >
~HPatchInteractionGraph() :
core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
~HPatchNode() :
core::pack::interaction_graph::HPatchNode< V, E, G >
~I_PARAM() :
core::scoring::APBSConfig::I_PARAM
~IdealBondLengthSet() :
core::chemical::IdealBondLengthSet
~IdentityEval() :
core::fragment::picking_old::vall::eval::IdentityEval
~IdentityEvent() :
core::conformation::signals::IdentityEvent
~IGEdgeReweightContainer() :
core::pack::task::IGEdgeReweightContainer
~IGEdgeReweighter() :
core::pack::task::IGEdgeReweighter
~ImportPoseOptions() :
core::import_pose::ImportPoseOptions
~ImportPoseOptionsCreator() :
core::import_pose::ImportPoseOptionsCreator
~IncludeCurrent() :
core::pack::task::operation::IncludeCurrent
~IndependentBBTorsionSRFD() :
core::fragment::IndependentBBTorsionSRFD
~InitializeExtraRotsFromCommandline() :
core::pack::task::operation::InitializeExtraRotsFromCommandline
~InitializeFromCommandline() :
core::pack::task::operation::InitializeFromCommandline
~InteractionGraphBase() :
core::pack::interaction_graph::InteractionGraphBase
~InterGroupInterfaceByVectorSelector() :
core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
~Invoker() :
core::scoring::etable::count_pair::Invoker
~InvRotamerDots() :
core::pack::interaction_graph::InvRotamerDots
~IsProteinCAPredicate() :
core::scoring::IsProteinCAPredicate
~iterator() :
core::io::raw_data::RawFileData::iterator
,
core::io::silent::SilentFileData::iterator
~JumpDownstreamSelector() :
core::pack::task::residue_selector::JumpDownstreamSelector
~JumpUpstreamSelector() :
core::pack::task::residue_selector::JumpUpstreamSelector
~KofNConstraintCreator() :
core::scoring::constraints::KofNConstraintCreator
~L1ScoringScheme() :
core::sequence::L1ScoringScheme
~LazyEdge() :
core::pack::interaction_graph::LazyEdge
~LazyInteractionGraph() :
core::pack::interaction_graph::LazyInteractionGraph
~LazyNode() :
core::pack::interaction_graph::LazyNode
~LazySilentFilePoseInputStream() :
core::import_pose::pose_stream::LazySilentFilePoseInputStream
~LeeRichards() :
core::scoring::packstat::LeeRichards
~LeGrandSasa() :
core::scoring::sasa::LeGrandSasa
~LengthEvent() :
core::conformation::signals::LengthEvent
~LengthEventCollector() :
core::pose::datacache::LengthEventCollector
~LengthGen() :
core::fragment::picking_old::vall::gen::LengthGen
~Librarian() :
core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
~Library() :
core::fragment::picking_old::concepts::Library< Books >
~Line() :
core::util::Line
~LinearChainbreakEnergy() :
core::scoring::methods::LinearChainbreakEnergy
~LinearMemEdge() :
core::pack::interaction_graph::LinearMemEdge
~LinearMemNode() :
core::pack::interaction_graph::LinearMemNode
~LinearMemoryInteractionGraph() :
core::pack::interaction_graph::LinearMemoryInteractionGraph
~LineMinimizationAlgorithm() :
core::optimization::LineMinimizationAlgorithm
~LipidAccInfo() :
core::conformation::membrane::LipidAccInfo
~LipoFileIO() :
core::membrane::io::LipoFileIO
~LipoFileLoader() :
core::membrane::io::LipoFileLoader
~LipoFileOptions() :
core::membrane::io::LipoFileOptions
~LKB_ResidueInfo() :
core::scoring::methods::LKB_ResidueInfo
~LKB_ResPairMinData() :
core::scoring::methods::LKB_ResPairMinData
~LocalCoordinateConstraint() :
core::scoring::constraints::LocalCoordinateConstraint
~LocalCoordinateConstraintCreator() :
core::scoring::constraints::LocalCoordinateConstraintCreator
~LongRangeTwoBodyEnergy() :
core::scoring::methods::LongRangeTwoBodyEnergy
~Loop() :
core::scoring::loop_graph::Loop
~LoopCycle() :
core::scoring::loop_graph::LoopCycle
~LoopGraph() :
core::scoring::loop_graph::LoopGraph
~LoopScoreInfo() :
core::scoring::loop_graph::LoopScoreInfo
~LREnergyContainer() :
core::scoring::LREnergyContainer
~MatrixScoringScheme() :
core::sequence::MatrixScoringScheme
~MCAligner() :
core::sequence::MCAligner
~MembraneProteinFactory() :
core::membrane::MembraneProteinFactory
~MembraneProtocolConfigLib() :
core::membrane::config::MembraneProtocolConfigLib
~MembraneResidueFactory() :
core::membrane::geometry::MembraneResidueFactory
~MetaPoseInputStream() :
core::import_pose::pose_stream::MetaPoseInputStream
~MinimizationEdge() :
core::scoring::MinimizationEdge
~MinimizationGraph() :
core::scoring::MinimizationGraph
~MinimizationNode() :
core::scoring::MinimizationNode
~MinimizerMap() :
core::optimization::MinimizerMap
~MinimizerMapBase() :
core::kinematics::MinimizerMapBase
~MinimizerOptions() :
core::optimization::MinimizerOptions
~MiniPose() :
core::pose::MiniPose
~MMAtomTypeSet() :
core::chemical::MMAtomTypeSet
~MMBondAngleEnergy() :
core::scoring::methods::MMBondAngleEnergy
~MMBondAngleLibrary() :
core::scoring::mm::MMBondAngleLibrary
~MMBondAngleResidueTypeParamSet() :
core::scoring::mm::MMBondAngleResidueTypeParamSet
~MMBondAngleScore() :
core::scoring::mm::MMBondAngleScore
~MMBondLengthEnergy() :
core::scoring::methods::MMBondLengthEnergy
~MMBondLengthLibrary() :
core::scoring::mm::MMBondLengthLibrary
~MMBondLengthScore() :
core::scoring::mm::MMBondLengthScore
~MMEnergyTableAtom() :
core::scoring::mm::mmtrie::MMEnergyTableAtom
~MMLJEnergyTable() :
core::scoring::mm::MMLJEnergyTable
~MMLJLibrary() :
core::scoring::mm::MMLJLibrary
~MMLJScore() :
core::scoring::mm::MMLJScore
~MMTorsionLibrary() :
core::scoring::mm::MMTorsionLibrary
~MMTorsionScore() :
core::scoring::mm::MMTorsionScore
~MolData() :
core::chemical::sdf::MolData
~MolecularSurfaceCalculator() :
core::scoring::sc::MolecularSurfaceCalculator
~MoveMap() :
core::kinematics::MoveMap
~MultiConstraintCreator() :
core::scoring::constraints::MultiConstraintCreator
~MultiCoolAnnealer() :
core::pack::annealer::MultiCoolAnnealer
~Multifunc() :
core::optimization::Multifunc
~NBListCache() :
core::scoring::symmetry::NBListCache
~NCaCaC_Dihedral_Func() :
core::scoring::disulfides::NCaCaC_Dihedral_Func
~NeighborhoodResidueSelector() :
core::pack::task::residue_selector::NeighborhoodResidueSelector
~NeighborList() :
core::scoring::NeighborList
~NMerPSSMEnergy() :
core::scoring::methods::NMerPSSMEnergy
~NMerRefEnergy() :
core::scoring::methods::NMerRefEnergy
~NMerSVMEnergy() :
core::scoring::methods::NMerSVMEnergy
~Node() :
core::graph::Node
,
core::kinematics::Node
~NodeBase() :
core::pack::interaction_graph::NodeBase
~NonResidueTypeConstraint() :
core::scoring::constraints::NonResidueTypeConstraint
~NoRepackDisulfides() :
core::pack::task::operation::NoRepackDisulfides
~NotResidueSelector() :
core::pack::task::residue_selector::NotResidueSelector
~NumDerivCheckData() :
core::optimization::NumDerivCheckData
~NumericalDerivCheckResult() :
core::optimization::NumericalDerivCheckResult
~NumNeighborsSelector() :
core::pack::task::residue_selector::NumNeighborsSelector
~NVlookup() :
core::scoring::nv::NVlookup
~NWAligner() :
core::sequence::NWAligner
~ObserverCache() :
core::pose::datacache::ObserverCache
~Obsolet_NamedAtomPairConstraint() :
core::scoring::constraints::Obsolet_NamedAtomPairConstraint
~OmegaTether() :
core::scoring::OmegaTether
~OneBodyEnergy() :
core::scoring::methods::OneBodyEnergy
~OneToAllEnergyContainer() :
core::scoring::OneToAllEnergyContainer
~OneToAllNeighborConstIterator() :
core::scoring::OneToAllNeighborConstIterator
~OneToAllNeighborIterator() :
core::scoring::OneToAllNeighborIterator
~OnTheFlyEdge() :
core::pack::interaction_graph::OnTheFlyEdge
~OnTheFlyInteractionGraph() :
core::pack::interaction_graph::OnTheFlyInteractionGraph
~OnTheFlyNode() :
core::pack::interaction_graph::OnTheFlyNode
~OperateOnCertainResidues() :
core::pack::task::operation::OperateOnCertainResidues
~OperateOnResidueSubset() :
core::pack::task::operation::OperateOnResidueSubset
~OptCysHG() :
core::pack::task::operation::OptCysHG
~OptH() :
core::pack::task::operation::OptH
~OrbitalTypeMapper() :
core::chemical::orbitals::OrbitalTypeMapper
~OrbitalTypeSet() :
core::chemical::orbitals::OrbitalTypeSet
~OrbitalXYZCoords() :
core::conformation::orbitals::OrbitalXYZCoords
~OrderedFragSet() :
core::fragment::OrderedFragSet
~OrResidueSelector() :
core::pack::task::residue_selector::OrResidueSelector
~P_AA() :
core::scoring::P_AA
~PackerTask() :
core::pack::task::PackerTask
~PackerTask_() :
core::pack::task::PackerTask_
~PairScoringScheme() :
core::sequence::PairScoringScheme
~Particle() :
core::optimization::Particle
~ParticleSwarmMinimizer() :
core::optimization::ParticleSwarmMinimizer
~Patch() :
core::chemical::Patch
~PatchCase() :
core::chemical::PatchCase
~PatchOperation() :
core::chemical::PatchOperation
~PBLifetimeCache() :
core::scoring::methods::PBLifetimeCache
~PDB_DReaderOptions() :
core::io::pdb::PDB_DReaderOptions
~PDBInfo() :
core::pose::PDBInfo
~PDBPoseInputStream() :
core::import_pose::pose_stream::PDBPoseInputStream
~PDBPoseMap() :
core::pose::PDBPoseMap
~PDBSilentStruct() :
core::import_pose::PDBSilentStruct
~PDBSilentStructCreator() :
core::import_pose::PDBSilentStructCreator
~PDEdge() :
core::pack::interaction_graph::PDEdge
~PDNode() :
core::pack::interaction_graph::PDNode
~PeptideBondedEnergyContainer() :
core::scoring::PeptideBondedEnergyContainer
~PeptideBondedNeighborConstIterator() :
core::scoring::PeptideBondedNeighborConstIterator
~PeptideBondedNeighborIterator() :
core::scoring::PeptideBondedNeighborIterator
~PoissonBoltzmannPotential() :
core::scoring::PoissonBoltzmannPotential
~Pose() :
core::pose::Pose
~PoseBalls() :
core::scoring::packing::PoseBalls
~PoseBallsLite() :
core::scoring::packing::PoseBallsLite
~PoseFromPDBLoader() :
core::import_pose::PoseFromPDBLoader
~PoseInputStream() :
core::import_pose::pose_stream::PoseInputStream
~PoseMetricContainer() :
core::pose::metrics::PoseMetricContainer
~PoseOutputStream() :
core::import_pose::pose_stream::PoseOutputStream
~PositionDdGInfo() :
core::io::PositionDdGInfo::PositionDdGInfo
~PQR() :
core::scoring::PQR
~PrecomputedPairEnergiesEdge() :
core::pack::interaction_graph::PrecomputedPairEnergiesEdge
~PrecomputedPairEnergiesInteractionGraph() :
core::pack::interaction_graph::PrecomputedPairEnergiesInteractionGraph
~PrecomputedPairEnergiesNode() :
core::pack::interaction_graph::PrecomputedPairEnergiesNode
~Predicate() :
core::scoring::Predicate
~PreserveCBeta() :
core::pack::task::operation::PreserveCBeta
~PreventRepacking() :
core::pack::task::operation::PreventRepacking
~PreventRepackingRLT() :
core::pack::task::operation::PreventRepackingRLT
~ProClosureEnergy() :
core::scoring::methods::ProClosureEnergy
~ProfSimScoringScheme() :
core::sequence::ProfSimScoringScheme
~ProQPotential() :
core::scoring::ProQPotential
~ProteinSilentStruct_SinglePrecCreator() :
core::io::silent::ProteinSilentStruct_SinglePrecCreator
~ProteinSilentStruct_Template() :
core::io::silent::ProteinSilentStruct_Template< T >
~ProteinSilentStructCreator() :
core::io::silent::ProteinSilentStructCreator
~PseudoBond() :
core::conformation::PseudoBond
~PseudoBondCollection() :
core::conformation::PseudoBondCollection
~R_PARAM() :
core::scoring::APBSConfig::R_PARAM
~Rama2BOffset() :
core::scoring::Rama2BOffset
~Rama2BOffsetEnergy() :
core::scoring::methods::Rama2BOffsetEnergy
~Ramachandran() :
core::scoring::Ramachandran
~Ramachandran2B() :
core::scoring::Ramachandran2B
~RawFileData() :
core::io::raw_data::RawFileData
~RawStruct() :
core::io::raw_data::RawStruct
~ReadResfile() :
core::pack::task::operation::ReadResfile
~ReadResfileAndObeyLengthEvents() :
core::pack::task::operation::ReadResfileAndObeyLengthEvents
~ReferenceEnergy() :
core::scoring::methods::ReferenceEnergy
~ReferenceEnergyNoncanonical() :
core::scoring::methods::ReferenceEnergyNoncanonical
~ReplicateTask() :
core::pack::task::operation::ReplicateTask
~ResfileCommand() :
core::pack::task::ResfileCommand
~ResfileContents() :
core::pack::task::ResfileContents
~ResFilterFactory() :
core::pack::task::operation::ResFilterFactory
~ResidualDipolarCoupling() :
core::scoring::ResidualDipolarCoupling
~Residue() :
core::conformation::Residue
~ResidueAtomTreeCollection() :
core::pack::scmin::ResidueAtomTreeCollection
~ResidueAtomTreeCollectionMomento() :
core::pack::scmin::ResidueAtomTreeCollectionMomento
~ResidueCartBondedParameters() :
core::scoring::methods::ResidueCartBondedParameters
~ResidueConstraints() :
core::scoring::constraints::ResidueConstraints
~ResidueCoordinateChangeList() :
core::kinematics::ResidueCoordinateChangeList
~ResidueDatabaseIO() :
core::chemical::ResidueDatabaseIO
~ResidueIndexSelector() :
core::pack::task::residue_selector::ResidueIndexSelector
~ResidueKinWriter() :
core::conformation::ResidueKinWriter
~ResidueLevelTask() :
core::pack::task::ResidueLevelTask
~ResidueLevelTask_() :
core::pack::task::ResidueLevelTask_
~ResidueLoader() :
core::chemical::ResidueLoader
~ResidueLoaderOptions() :
core::chemical::ResidueLoaderOptions
~ResidueMatcher() :
core::conformation::ResidueMatcher
~ResidueNblistData() :
core::scoring::ResidueNblistData
~ResidueNeighborConstIterator() :
core::scoring::ResidueNeighborConstIterator
~ResidueNeighborIterator() :
core::scoring::ResidueNeighborIterator
~ResiduePairNeighborList() :
core::scoring::ResiduePairNeighborList
~ResiduePairXYZ() :
core::scoring::func::ResiduePairXYZ
~ResidueSelector() :
core::chemical::ResidueSelector
,
core::pack::task::residue_selector::ResidueSelector
~ResidueSelectorSingle() :
core::chemical::ResidueSelectorSingle
~ResidueType() :
core::chemical::ResidueType
~ResidueTypeConstraint() :
core::scoring::constraints::ResidueTypeConstraint
~ResidueTypeKinWriter() :
core::chemical::ResidueTypeKinWriter
~ResidueTypeLinkingConstraint() :
core::scoring::constraints::ResidueTypeLinkingConstraint
~ResidueTypeSet() :
core::chemical::ResidueTypeSet
~ResidueXYZ() :
core::scoring::func::ResidueXYZ
~ResLvlTaskOperationCreator() :
core::pack::task::operation::ResLvlTaskOperationCreator
~ResLvlTaskOperationFactory() :
core::pack::task::operation::ResLvlTaskOperationFactory
~RespairInteractions() :
core::scoring::custom_pair_distance::RespairInteractions
~ResPairMinimizationData() :
core::scoring::ResPairMinimizationData
~ResRangePredicate() :
core::scoring::ResRangePredicate
~ResResEnergyInvoker() :
core::scoring::etable::ResResEnergyInvoker< Evaluator >
~ResSingleMinimizationData() :
core::scoring::ResSingleMinimizationData
~RestrictAbsentCanonicalAAS() :
core::pack::task::operation::RestrictAbsentCanonicalAAS
~RestrictAbsentCanonicalAASRLT() :
core::pack::task::operation::RestrictAbsentCanonicalAASRLT
~RestrictResidueToRepacking() :
core::pack::task::operation::RestrictResidueToRepacking
~RestrictToInterface() :
core::pack::task::operation::RestrictToInterface
~RestrictToRepacking() :
core::pack::task::operation::RestrictToRepacking
~RestrictToRepackingRLT() :
core::pack::task::operation::RestrictToRepackingRLT
~RestrictYSDesign() :
core::pack::task::operation::RestrictYSDesign
~RingConformerSet() :
core::chemical::RingConformerSet
~RNA_BulgeEnergy() :
core::scoring::rna::RNA_BulgeEnergy
~RNA_CS_parameters() :
core::scoring::rna::chemical_shift::RNA_CS_parameters
~RNA_CS_residue_parameters() :
core::scoring::rna::chemical_shift::RNA_CS_residue_parameters
~RNA_FittedTorsionInfo() :
core::chemical::rna::RNA_FittedTorsionInfo
~RNA_FullAtomVDW_BasePhosphate() :
core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
~RNA_IdealCoord() :
core::pose::rna::RNA_IdealCoord
~RNA_ResidueLevelTask() :
core::pack::task::rna::RNA_ResidueLevelTask
~RNA_ResidueType() :
core::chemical::rna::RNA_ResidueType
~RNA_SilentStruct() :
core::io::silent::RNA_SilentStruct
~RNA_SilentStructCreator() :
core::io::silent::RNA_SilentStructCreator
~RNA_SugarCloseEnergy() :
core::scoring::rna::RNA_SugarCloseEnergy
~RNA_SuiteName() :
core::pose::rna::RNA_SuiteName
~RNA_TorsionPotential() :
core::scoring::rna::RNA_TorsionPotential
~RotamerAssigningAnnealer() :
core::pack::annealer::RotamerAssigningAnnealer
~RotamerBuildingData() :
core::pack::dunbrack::RotamerBuildingData
~RotamerConstraint() :
core::pack::dunbrack::RotamerConstraint
~RotamerDots() :
core::pack::interaction_graph::RotamerDots
~RotamerDotsCache() :
core::pack::interaction_graph::RotamerDotsCache
~RotamerExplosion() :
core::pack::task::operation::RotamerExplosion
~RotamericData() :
core::pack::dunbrack::RotamericData< T >
~RotamericSingleResidueDunbrackLibrary() :
core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T >
~RotamerLibrary() :
core::pack::dunbrack::RotamerLibrary
~RotamerLibraryScratchSpace() :
core::pack::dunbrack::RotamerLibraryScratchSpace
~RotamerOperation() :
core::pack::rotamer_set::RotamerOperation
~RotamerSet() :
core::pack::rotamer_set::RotamerSet
~RotamerSet_() :
core::pack::rotamer_set::RotamerSet_
~RotamerSetBase() :
core::conformation::RotamerSetBase
~RotamerSetFactory() :
core::pack::rotamer_set::RotamerSetFactory
~RotamerSetOperation() :
core::pack::rotamer_set::RotamerSetOperation
~RotamerSets() :
core::pack::rotamer_set::RotamerSets
~RotamerSetsBase() :
core::pack::rotamer_set::RotamerSetsBase
~RotamerSubset() :
core::pack::rotamer_set::RotamerSubset
~RotamerSubsets() :
core::pack::rotamer_set::RotamerSubsets
~RotamerTrie() :
core::scoring::trie::RotamerTrie< AT, CPDATA >
~RotamerTrieBase() :
core::scoring::trie::RotamerTrieBase
~RTMin() :
core::pack::RTMin
~SasaCalc() :
core::scoring::sasa::SasaCalc
~SasaMethod() :
core::scoring::sasa::SasaMethod
~SAXSEnergy() :
core::scoring::saxs::SAXSEnergy
~SC_BB_EnergyInvoker() :
core::scoring::etable::SC_BB_EnergyInvoker< Evaluator >
~SC_SC_EnergyInvoker() :
core::scoring::etable::SC_SC_EnergyInvoker< Evaluator >
~SC_Whole_EnergyInvoker() :
core::scoring::etable::SC_Whole_EnergyInvoker< Evaluator >
~ScalarWeightedFunc() :
core::scoring::func::ScalarWeightedFunc
~SCMinMinimizerMap() :
core::pack::scmin::SCMinMinimizerMap
~SCMinMultifunc() :
core::pack::scmin::SCMinMultifunc
~ScoreFileSilentStruct() :
core::io::silent::ScoreFileSilentStruct
~ScoreFileSilentStructCreator() :
core::io::silent::ScoreFileSilentStructCreator
~ScoreFunction() :
core::scoring::ScoreFunction
~ScoreFunctionInfo() :
core::scoring::ScoreFunctionInfo
~ScoreJumpFileSilentStruct() :
core::io::silent::ScoreJumpFileSilentStruct
~ScoreJumpFileSilentStructCreator() :
core::io::silent::ScoreJumpFileSilentStructCreator
~ScoreLessThanComparator() :
core::import_pose::atom_tree_diffs::ScoreLessThanComparator
~ScoreStruct() :
core::io::raw_data::ScoreStruct
~ScoringManager() :
core::scoring::ScoringManager
~ScoringScheme() :
core::sequence::ScoringScheme
~SecondaryStructure() :
core::fragment::SecondaryStructure
~SecondaryStructurePotential() :
core::scoring::SecondaryStructurePotential
~SecondaryStructureWeights() :
core::scoring::SecondaryStructureWeights
~SecStructGen() :
core::fragment::picking_old::vall::gen::SecStructGen
~SelectedResPredicate() :
core::scoring::SelectedResPredicate
~SemiRotamericSingleResidueDunbrackLibrary() :
core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
~Sequence() :
core::sequence::Sequence
~SequenceAlignment() :
core::sequence::SequenceAlignment
~SequenceAnnotation() :
core::environment::SequenceAnnotation
~SequenceCoupling() :
core::sequence::SequenceCoupling
~SequenceCouplingCreator() :
core::sequence::SequenceCouplingCreator
~SequenceCreator() :
core::sequence::SequenceCreator
~SequenceDependentRefEnergy() :
core::scoring::methods::SequenceDependentRefEnergy
~SequenceMapping() :
core::id::SequenceMapping
~SequenceProfile() :
core::sequence::SequenceProfile
~SequenceProfileConstraint() :
core::scoring::constraints::SequenceProfileConstraint
~SequenceProfileConstraintCreator() :
core::scoring::constraints::SequenceProfileConstraintCreator
~SequenceProfileCreator() :
core::sequence::SequenceProfileCreator
~SetRotamerCouplings() :
core::pack::task::operation::SetRotamerCouplings
~SetRotamerLinks() :
core::pack::task::operation::SetRotamerLinks
~SG_Dist_Func() :
core::scoring::disulfides::SG_Dist_Func
~SGSG_Dihedral_Func() :
core::scoring::disulfides::SGSG_Dihedral_Func
~ShapeComplementarityCalculator() :
core::scoring::sc::ShapeComplementarityCalculator
~ShortestPathInFoldTree() :
core::kinematics::ShortestPathInFoldTree
~ShortRangeTwoBodyEnergy() :
core::scoring::methods::ShortRangeTwoBodyEnergy
~SilentFileData() :
core::io::silent::SilentFileData
~SilentFileLoader() :
core::io::silent::SilentFileLoader
~SilentFileLoaderCreator() :
core::io::silent::SilentFileLoaderCreator
~SilentFileOptions() :
core::io::silent::SilentFileOptions
~SilentFileOptionsCreator() :
core::io::silent::SilentFileOptionsCreator
~SilentFilePoseInputStream() :
core::import_pose::pose_stream::SilentFilePoseInputStream
~SilentStruct() :
core::io::silent::SilentStruct
~SilentStructCreator() :
core::io::silent::SilentStructCreator
~SimAnnealerBase() :
core::pack::annealer::SimAnnealerBase
~SimpleDerivCheckResult() :
core::optimization::SimpleDerivCheckResult
~SimpleEdge() :
core::pack::interaction_graph::SimpleEdge
~SimpleInteractionGraph() :
core::pack::interaction_graph::SimpleInteractionGraph
~SimpleNode() :
core::pack::interaction_graph::SimpleNode
~SimplePDB() :
core::scoring::packstat::SimplePDB
~SimplePDB_Atom() :
core::scoring::packstat::SimplePDB_Atom
~SimpleScoringScheme() :
core::sequence::SimpleScoringScheme
~SimpleSequenceCreator() :
core::sequence::SimpleSequenceCreator
~SingleLigandRotamerLibrary() :
core::pack::dunbrack::SingleLigandRotamerLibrary
~SingleResidueCenrotLibrary() :
core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary
~SingleResidueDunbrackLibrary() :
core::pack::dunbrack::SingleResidueDunbrackLibrary
~SingleResidueFragData() :
core::fragment::SingleResidueFragData
~SingleResidueMultifunc() :
core::optimization::SingleResidueMultifunc
~SingleResidueRotamerLibrary() :
core::pack::dunbrack::SingleResidueRotamerLibrary
~SiteConstraintCreator() :
core::scoring::constraints::SiteConstraintCreator
~SiteConstraintResiduesCreator() :
core::scoring::constraints::SiteConstraintResiduesCreator
~SkipViolFunc() :
core::scoring::func::SkipViolFunc
~Slice() :
core::scoring::packstat::Slice
~SOGFunc_Impl() :
core::scoring::func::SOGFunc_Impl
~SpanFileIO() :
core::membrane::io::SpanFileIO
~SpanFileLoader() :
core::membrane::io::SpanFileLoader
~SpanFileOptions() :
core::membrane::io::SpanFileOptions
~SpanningTopology() :
core::conformation::membrane::SpanningTopology
~SpecialSegmentsObserver() :
core::pose::datacache::SpecialSegmentsObserver
~SplineFunc() :
core::scoring::func::SplineFunc
~StrandPairing() :
core::scoring::dssp::StrandPairing
~StrandPairingSet() :
core::scoring::dssp::StrandPairingSet
~Strands() :
core::scoring::Strands
~SuckerEnergy() :
core::scoring::methods::SuckerEnergy
~SurfaceBackgroundEdge() :
core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
~SurfaceBackgroundNode() :
core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
~SurfaceEdge() :
core::pack::interaction_graph::SurfaceEdge< V, E, G >
~SurfaceEnergies() :
core::scoring::solid_surface::SurfaceEnergies
~SurfaceInteractionGraph() :
core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
~SurfaceNode() :
core::pack::interaction_graph::SurfaceNode< V, E, G >
~SWAligner() :
core::sequence::SWAligner
~SymAtomTreeMultifunc() :
core::optimization::symmetry::SymAtomTreeMultifunc
~SymDof() :
core::conformation::symmetry::SymDof
~SymmData() :
core::conformation::symmetry::SymmData
~SymmDataLoader() :
core::conformation::symmetry::SymmDataLoader
~SymmDataOptions() :
core::conformation::symmetry::SymmDataOptions
~SymmDataOptionsCreator() :
core::conformation::symmetry::SymmDataOptionsCreator
~SymmetricConformation() :
core::conformation::symmetry::SymmetricConformation
~SymmetricEnergies() :
core::scoring::symmetry::SymmetricEnergies
~SymmetricLigandEnergy() :
core::scoring::methods::SymmetricLigandEnergy
~SymmetricRotamerSet_() :
core::pack::rotamer_set::symmetry::SymmetricRotamerSet_
~SymmetricRotamerSets() :
core::pack::rotamer_set::symmetry::SymmetricRotamerSets
~SymmetryInfo() :
core::conformation::symmetry::SymmetryInfo
~SymMinimizerMap() :
core::optimization::symmetry::SymMinimizerMap
~SymmLinearMemEdge() :
core::pack::interaction_graph::SymmLinearMemEdge
~SymmLinearMemNode() :
core::pack::interaction_graph::SymmLinearMemNode
~SymmLinearMemoryInteractionGraph() :
core::pack::interaction_graph::SymmLinearMemoryInteractionGraph
~SymmMinimalistEdge() :
core::pack::interaction_graph::SymmMinimalistEdge
~SymmMinimalistInteractionGraph() :
core::pack::interaction_graph::SymmMinimalistInteractionGraph
~SymmMinimalistNode() :
core::pack::interaction_graph::SymmMinimalistNode
~SymmOnTheFlyEdge() :
core::pack::interaction_graph::SymmOnTheFlyEdge
~SymmOnTheFlyInteractionGraph() :
core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
~SymmOnTheFlyNode() :
core::pack::interaction_graph::SymmOnTheFlyNode
~SymSlideInfo() :
core::conformation::symmetry::SymSlideInfo
~TableLookupEvaluator() :
core::scoring::etable::TableLookupEvaluator
~TaskFactory() :
core::pack::task::TaskFactory
~TaskOperation() :
core::pack::task::operation::TaskOperation
~TaskOperationCreator() :
core::pack::task::operation::TaskOperationCreator
~TaskOperationFactory() :
core::pack::task::operation::TaskOperationFactory
~TenANeighborEdge() :
core::scoring::TenANeighborEdge
~TenANeighborGraph() :
core::scoring::TenANeighborGraph
~TenANeighborNode() :
core::scoring::TenANeighborNode
~TMscore() :
core::scoring::TMscore
~TMscoreStore() :
core::scoring::TMscoreStore
~TrieCountPairAll() :
core::scoring::etable::etrie::TrieCountPairAll
~TrieCountPairBase() :
core::scoring::trie::TrieCountPairBase
~TrieNode() :
core::scoring::trie::TrieNode< AT, CPDATA >
~TwelveANeighborEdge() :
core::scoring::TwelveANeighborEdge
~TwelveANeighborGraph() :
core::scoring::TwelveANeighborGraph
~TwelveANeighborNode() :
core::scoring::TwelveANeighborNode
~TwoBodyEnergy() :
core::scoring::methods::TwoBodyEnergy
~UEEdge() :
core::graph::UEEdge< V, E >
~UEVertex() :
core::graph::UEVertex< V, E >
~UltraLightResidue() :
core::conformation::UltraLightResidue
~UnboundRotamersOperation() :
core::pack::rotamer_set::UnboundRotamersOperation
~UnfoldedStateEnergy() :
core::scoring::methods::UnfoldedStateEnergy
~UnfoldedStatePotential() :
core::scoring::UnfoldedStatePotential
~UpperEdgeGraph() :
core::graph::UpperEdgeGraph< V, E >
~USOGFunc() :
core::scoring::func::USOGFunc
~VallFragmentEval() :
core::fragment::picking_old::vall::eval::VallFragmentEval
~VallFragmentGen() :
core::fragment::picking_old::vall::gen::VallFragmentGen
~VallFragmentScore() :
core::fragment::picking_old::vall::scores::VallFragmentScore
~VallLibrarian() :
core::fragment::picking_old::vall::VallLibrarian
~VallResidue() :
core::fragment::picking_old::vall::VallResidue
~VDWAtom() :
core::scoring::vdwaals::VDWAtom
~VirtualCoordinate() :
core::conformation::symmetry::VirtualCoordinate
~VirtualCoordinates() :
core::conformation::symmetry::VirtualCoordinates
~WaterAdductHBondPotential() :
core::scoring::WaterAdductHBondPotential
~WaterAnchorInfo() :
core::pack::rotamer_set::WaterAnchorInfo
~WholeStructureEnergy() :
core::scoring::methods::WholeStructureEnergy
~WholeWholeEnergyInvoker() :
core::scoring::etable::WholeWholeEnergyInvoker< Evaluator >
~XYZ_Func() :
core::scoring::func::XYZ_Func
~XYZEvent() :
core::conformation::signals::XYZEvent
Generated on Mon Apr 21 2014 16:27:23 for Rosetta Core by
1.8.7