- a -

• ArrayPool : core::graph::ArrayPoolElement< T >

- b -

• BackgroundToFirstClassEdge< V, E, G > : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >

- c -

• ChemicalShiftAnisotropy : core::scoring::CSA
• const_iterator : core::io::raw_data::RawFileData::iterator , core::io::silent::SilentFileData::iterator
• ConstantLengthFragSet : core::fragment::ConstantLengthFragSetIterator_
• ConstFrameIterator : core::fragment::FrameIteratorWorker_
• core::environment::EnvCore : core::environment::DofPassport

- d -

• DipolarCoupling : core::scoring::DC
• distance : core::kinematics::Jump , core::kinematics::RT , core::kinematics::tree::Atom
• distance_squared : core::kinematics::tree::Atom

- e -

• Edge : core::graph::Graph
• EdgeBase : core::pack::interaction_graph::InteractionGraphBase
• EdgeList : core::graph::EdgeListConstIterator , core::graph::EdgeListElement , core::graph::EdgeListIterator
• EdgeListConstIterator : core::graph::EdgeListIterator

- f -

• FragID_Iterator : core::fragment::ConstFrameIterator , core::fragment::FrameIterator , core::fragment::FrameIteratorWorker_ , core::fragment::FrameListIterator_
• FrameIterator : core::fragment::FrameIteratorWorker_
• FrameList : core::fragment::FrameListIterator_

- n -

• Node : core::graph::Graph
• NodeBase : core::pack::interaction_graph::InteractionGraphBase

- o -

• operator!= : core::chemical::ResConnID , core::conformation::symmetry::SymDof , core::conformation::symmetry::SymmData , core::conformation::symmetry::SymSlideInfo , core::conformation::symmetry::VirtualCoordinate , core::id::AtomID , core::id::AtomID_Map< T > , core::id::DOF_ID , core::id::DOF_ID_Map< T > , core::id::DOF_ID_Range , core::id::JumpID , core::id::NamedAtomID , core::id::TorsionID , core::id::TorsionID_Range , core::kinematics::Edge , core::kinematics::FoldTree , core::scoring::hbonds::FadeInterval , core::scoring::hbonds::HBondOptions , core::scoring::methods::EnergyMethodOptions , core::scoring::ScoreFunctionInfo
• operator< : core::chemical::ResConnID , core::id::AtomID , core::id::DOF_ID , core::id::DOF_ID_Range , core::id::JumpID , core::id::NamedAtomID , core::id::NamedStubID , core::id::StubID , core::id::TorsionID , core::id::TorsionID_Range , core::kinematics::Edge , core::optimization::DOF_Node , core::scoring::rna::Base_pair , core::scoring::rna::Base_stack , core::sequence::SequenceAlignment
• operator<< : core::chemical::Atom , core::chemical::AtomType , core::chemical::Bond , core::chemical::Orbital , core::conformation::symmetry::SymDof , core::conformation::symmetry::SymmetryInfo , core::fragment::FragSet , core::fragment::picking_old::vall::scores::VallFragmentScore , core::id::AtomID , core::id::DOF_ID , core::id::DOF_ID_Range , core::id::JumpID , core::id::NamedAtomID , core::id::NamedStubID , core::id::StubID , core::id::TorsionID , core::id::TorsionID_Range , core::io::pdb::AtomInformation , core::io::pdb::Field , core::io::pdb::FileData , core::kinematics::Edge , core::kinematics::FoldTree , core::kinematics::Jump , core::kinematics::RT , core::pack::task::PackerTask , core::pose::CrystInfo , core::pose::RemarkInfo , core::scoring::constraints::Obsolet_NamedAtomPairConstraint , core::scoring::dssp::StrandPairing , core::scoring::dssp::StrandPairingSet , core::scoring::Energies , core::scoring::func::ConstantFunc , core::scoring::func::EtableFunc , core::scoring::func::Func , core::scoring::func::GaussianFunc , core::scoring::func::MixtureFunc , core::scoring::func::SoedingFunc , core::scoring::func::SOGFunc , core::scoring::Hairpin , core::scoring::Hairpins , core::scoring::hbonds::FadeInterval , core::scoring::hbonds::HBond , core::scoring::hbonds::HBondOptions , core::scoring::hbonds::HBondSet , core::scoring::Helices , core::scoring::loop_graph::Loop , core::scoring::loop_graph::LoopCycle , core::scoring::mm::MMBondAngleResidueTypeParam , core::scoring::packing::HolesParams , core::scoring::packstat::SimplePDB , core::scoring::packstat::SimplePDB_Atom , core::scoring::rna::Base_pair , core::scoring::rna::Base_stack , core::scoring::Strands , core::scoring::vdwaals::VDWAtom , core::sequence::ChemicalShiftSequence , core::sequence::DP_Matrix , core::sequence::Sequence , core::sequence::SequenceAlignment , core::sequence::SequenceProfile
• operator== : core::chemical::ResConnID , core::conformation::symmetry::SymDof , core::conformation::symmetry::SymmData , core::conformation::symmetry::SymSlideInfo , core::conformation::symmetry::VirtualCoordinate , core::id::AtomID , core::id::AtomID_Map< T > , core::id::BondID , core::id::DOF_ID , core::id::DOF_ID_Map< T > , core::id::DOF_ID_Range , core::id::JumpID , core::id::NamedAtomID , core::id::TorsionID , core::id::TorsionID_Range , core::kinematics::Edge , core::kinematics::FoldTree , core::scoring::etable::EtableOptions , core::scoring::hbonds::FadeInterval , core::scoring::hbonds::HBEvalTuple , core::scoring::hbonds::HBond , core::scoring::hbonds::HBondOptions , core::scoring::hbonds::HBondSet , core::scoring::loop_graph::Loop , core::scoring::methods::EnergyMethodOptions , core::scoring::rna::Base_pair , core::scoring::ScoreFunctionInfo , core::scoring::SecondaryStructureWeights
• operator>> : core::conformation::symmetry::SymmetryInfo , core::id::NamedAtomID , core::id::NamedStubID , core::kinematics::Edge , core::kinematics::FoldTree , core::kinematics::Jump , core::kinematics::RT , core::scoring::dssp::StrandPairing , core::scoring::dssp::StrandPairingSet , core::scoring::packstat::SimplePDB , core::scoring::packstat::SimplePDB_Atom , core::sequence::Sequence , core::sequence::SequenceAlignment
• OrderedFragSet : core::fragment::OrderedFragSetIterator_

- r -

• ResidualDipolarCoupling : core::scoring::RDC
• RotamerDots : core::pack::interaction_graph::RotamerDotsCache

- s -

• ShapeComplementarityCalculator : core::scoring::sc::Atom
• SingleResidueDunbrackLibrary : core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T > , core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
• swap : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T >

- u -

• UEEdge< V, E > : core::graph::UEVertex< V, E > , core::graph::UpperEdgeGraph< V, E >
• UEVertex< V, E > : core::graph::UpperEdgeGraph< V, E >
• UpperEdgeGraph< V, E > : core::graph::UEEdge< V, E > , core::graph::UEVertex< V, E >