- s -

• ScoreConstIterator : core::fragment::picking_old::vall::VallLibrarian
• ScoredFrag : core::fragment::CacheWrapper< T, XCacheUnit >
• ScoredList : core::fragment::CacheWrapper< T, XCacheUnit >
• ScoreFunction : core::fragment::picking_old::vall::eval::EnergyEval , core::pack::interaction_graph::OnTheFlyInteractionGraph , core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
• ScoreFunctionCOP : core::fragment::picking_old::vall::eval::EnergyEval
• ScoreFunctionInfo : core::scoring::Energies
• ScoreFunctionOP : core::fragment::picking_old::vall::eval::EnergyEval , core::pack::interaction_graph::OnTheFlyInteractionGraph , core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
• ScoreIterator : core::fragment::picking_old::vall::VallLibrarian
• ScoreList : core::fragment::CacheWrapper< T, XCacheUnit >
• Scores : core::fragment::picking_old::vall::VallLibrarian
• ScoreType : core::scoring::Energies
• ScoringSchemeTypes : core::sequence::ScoringSchemeFactory
• ScValue : core::scoring::sc::MolecularSurfaceCalculator
• Segment : core::pose::datacache::SpecialSegmentsObserver
• SeqLabelMap : core::environment::SequenceAnnotation
• SequenceCreatorMap : core::sequence::SequenceFactory
• SequenceMapping : core::scoring::constraints::Obsolet_NamedAtomPairConstraint , core::scoring::constraints::SequenceProfileConstraint
• SequenceProfile : core::scoring::constraints::SequenceProfileConstraint
• SequenceProfileCOP : core::scoring::constraints::SequenceProfileConstraint
• SilentStructCreatorMap : core::io::silent::SilentStructFactory
• Size : core::conformation::ResidueKinWriter , core::conformation::signals::IdentityEvent , core::conformation::signals::LengthEvent , core::fragment::IndependentBBTorsionSRFD , core::fragment::picking_old::concepts::Book< Pages > , core::fragment::picking_old::concepts::Extent< PageIterator > , core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::concepts::Library< Books > , core::fragment::picking_old::vall::gen::LengthGen , core::fragment::picking_old::vall::gen::SecStructGen , core::fragment::picking_old::vall::gen::VallFragmentGen , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary , core::fragment::picking_old::vall::VallResidue , core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T > , core::pack::task::operation::OptH , core::pose::datacache::ObserverCache , core::pose::datacache::SpecialSegmentsObserver , core::pose::PDBInfo , core::pose::PDBPoseMap , core::scoring::ChemicalShiftAnisotropy , core::scoring::DipolarCoupling , core::scoring::ResidualDipolarCoupling , core::scoring::ResidualDipolarCoupling_Rohl , core::util::ABEGOManager
• Size2 : core::scoring::methods::ResidueCartBondedParameters
• Size3 : core::scoring::methods::ResidueCartBondedParameters
• Size4 : core::scoring::methods::ResidueCartBondedParameters
• size_type : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T >
• SizeList : core::scoring::dssp::StrandPairing
• Sizes : core::scoring::methods::LK_BallEnergy
• SRFD_List : core::fragment::FragData
• SRFD_Types : core::fragment::FragFactory
• StrandPairings : core::scoring::dssp::StrandPairingSet
• String : core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::gen::SecStructGen , core::fragment::picking_old::vall::VallResidue
• string : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream , core::io::silent::SilentStruct
• String : core::pose::PDBInfo
• string : core::scoring::dna::DirectReadoutPotential , core::sequence::ChemicalShiftSequence , core::sequence::CompositeSequence , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• String : core::util::ABEGO , core::util::ABEGOManager
• Strings : core::io::pdb::FileData
• StubID : core::kinematics::AtomTree
• Super : core::conformation::signals::IdentityEvent , core::conformation::signals::LengthEvent , core::conformation::signals::XYZEvent , core::fragment::IndependentBBTorsionSRFD , core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::eval::VallFragmentEval , core::fragment::picking_old::vall::gen::LengthGen , core::fragment::picking_old::vall::gen::SecStructGen , core::fragment::picking_old::vall::gen::VallFragmentGen , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary , core::fragment::picking_old::vall::VallSection , core::kinematics::tree::Atom_ , core::kinematics::tree::BondedAtom , core::kinematics::tree::JumpAtom , core::pack::task::operation::NoRepackDisulfides , core::pack::task::operation::OptCysHG , core::pack::task::operation::OptH , core::pose::datacache::CacheableObserver , core::pose::datacache::ObserverCache , core::pose::PDBInfo , core::pose::PDBPoseMap , core::pose::signals::ConformationEvent , core::pose::signals::EnergyEvent
• Super2 : core::fragment::IndependentBBTorsionSRFD
• SymmetricConformation : core::optimization::symmetry::SymAtomTreeMinimizer , core::pack::rotamer_set::symmetry::SymmetricRotamerSet_ , core::pack::rotamer_set::symmetry::SymmetricRotamerSets , core::scoring::SecondaryStructurePotential , core::scoring::symmetry::SymmetricEnergies , core::scoring::symmetry::SymmetricScoreFunction
• SymmetricScoreFunction : core::scoring::ScoreFunctionFactory
• SymmetryInfoCOP : core::optimization::symmetry::SymMinimizerMap , core::pack::rotamer_set::symmetry::SymmetricRotamerSet_ , core::pack::rotamer_set::symmetry::SymmetricRotamerSets , core::scoring::SecondaryStructurePotential , core::scoring::symmetry::SymmetricEnergies , core::scoring::symmetry::SymmetricScoreFunction
• SymmetryInfoOP : core::optimization::symmetry::SymAtomTreeMinimizer